TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119408.7 + phase: 0 /pseudo
         (218 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210035                                                              296  5e-81
BM107968                                                              172  1e-43
AI960992                                                              125  2e-29
TC223896 UP|Q7FPX7 (Q7FPX7) Polygalacturonase inhibitor protein,...    31  0.50
AW755511 similar to GP|11120514|gb| cytokinin oxidase {Arabidops...    28  2.5
TC224849 similar to GB|AAN46773.1|24111299|BT001019 At3g52990/F8...    28  3.2
TC228991 similar to GB|AAQ22666.1|33589800|BT010197 At3g63530 {A...    27  5.5
BM093776                                                               27  7.2
TC212416 homologue to UP|Q89QR3 (Q89QR3) Bll3061 protein, partia...    27  7.2
AW705050                                                               27  9.4

>TC210035 
          Length = 927

 Score =  296 bits (758), Expect = 5e-81
 Identities = 157/221 (71%), Positives = 162/221 (73%), Gaps = 50/221 (22%)
 Frame = +2

Query: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60
           MAAPFFSTPFQPYVYQS QDAIIPFQILGGE+QVVQIMLKP EKIIAKPGSMCFMSGS+E
Sbjct: 221 MAAPFFSTPFQPYVYQSPQDAIIPFQILGGEAQVVQIMLKPQEKIIAKPGSMCFMSGSIE 400

Query: 61  MENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFVGIAAPYFARILP----------- 109
           MENAYLPENEVGIWQWLFGKT+T+IV+ NSGPSDGFVGIAAPYFARILP           
Sbjct: 401 MENAYLPENEVGIWQWLFGKTITSIVLCNSGPSDGFVGIAAPYFARILPVCTSMPLQLS* 580

Query: 110 ---------------------------------------IDLATFNGEILCQPDAFLCSV 130
                                                  IDLA FNGEILCQPDAFLCSV
Sbjct: 581 IIHCYSCFKSRY**SETHICIHLTEFLFIFGYVSVTQIQIDLAMFNGEILCQPDAFLCSV 760

Query: 131 NDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGS 171
           NDVKVSN VDQRGRN VA AE FLRQKLSGQGLAFIL GGS
Sbjct: 761 NDVKVSNIVDQRGRNAVASAEGFLRQKLSGQGLAFILAGGS 883


>BM107968 
          Length = 371

 Score =  172 bits (435), Expect = 1e-43
 Identities = 86/103 (83%), Positives = 90/103 (86%), Gaps = 1/103 (0%)
 Frame = +3

Query: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60
           MAAPFFSTPFQPYVY S QDAIIPFQILGGE+QVVQIMLKP EKIIAKPGSMCFMSGSVE
Sbjct: 63  MAAPFFSTPFQPYVYXSPQDAIIPFQILGGEAQVVQIMLKPQEKIIAKPGSMCFMSGSVE 242

Query: 61  MENAYLPENEVGIWQWLFGKTVTNIVVRNSGPSDGFV-GIAAP 102
           MENAYLPENE   W WL GKT+T IV+RNSGPS   + GIAAP
Sbjct: 243 MENAYLPENEXXXWXWLXGKTITXIVLRNSGPS*WILFGIAAP 371


>AI960992 
          Length = 434

 Score =  125 bits (313), Expect = 2e-29
 Identities = 60/64 (93%), Positives = 62/64 (96%)
 Frame = +2

Query: 1   MAAPFFSTPFQPYVYQSQQDAIIPFQILGGESQVVQIMLKPHEKIIAKPGSMCFMSGSVE 60
           MAAPFFSTPFQPYVYQS QDAIIPFQILGGE+QVVQIMLKP EKIIAKPGSMCFMSGS+E
Sbjct: 242 MAAPFFSTPFQPYVYQSPQDAIIPFQILGGEAQVVQIMLKPQEKIIAKPGSMCFMSGSIE 421

Query: 61  MENA 64
           MENA
Sbjct: 422 MENA 433


>TC223896 UP|Q7FPX7 (Q7FPX7) Polygalacturonase inhibitor protein, complete
          Length = 1094

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 27/80 (33%), Positives = 37/80 (45%), Gaps = 2/80 (2%)
 Frame = -3

Query: 121 CQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQ-KLSGQGLAFILGGGSVVQKILEV 179
           C  D  +C V  ++V    D RG       EV + + K+   G     GG  V    ++V
Sbjct: 399 CARDIGVCDVEIIEVGEISDGRGD---CAEEVCVNEVKIIQVGKVAYGGGNRVGFGEVKV 229

Query: 180 GEVLAVDVSC-IVAVTSTVD 198
           GEV  VD +C +VAV  T D
Sbjct: 228 GEVEDVDAACLVVAVGDTSD 169


>AW755511 similar to GP|11120514|gb| cytokinin oxidase {Arabidopsis
           thaliana}, partial (12%)
          Length = 433

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -3

Query: 132 DVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFIL---GGGSVVQKILEVGEVLAVDVS 188
           +V+++     R R+V        RQ+LSG   A +L   GGGS V+  +E   V+     
Sbjct: 311 EVRLARRRLHRSRHVAGDGGANNRQRLSGFHPAEVLAGSGGGSEVESSVESRNVVVWHRF 132

Query: 189 CIVAV 193
           C+++V
Sbjct: 131 CVISV 117


>TC224849 similar to GB|AAN46773.1|24111299|BT001019 At3g52990/F8J2_160
           {Arabidopsis thaliana;} , complete
          Length = 1966

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +1

Query: 116 NGEILCQPDAFLCSVNDVKVSNTVDQRGRNVVAGAEVFLRQKLSGQGLAFILGGGSVVQK 175
           NG ++  PD    + +++   N  D   + V  G  +F+ Q        ++  G      
Sbjct: 454 NGLVVLTPDQGQEASSEILPIN-FDGLAKAVKKGDTIFIGQ--------YLFTGSETTSV 606

Query: 176 ILEVGEVLAVDVSCIVAVTSTV 197
            LEV EV   DV CI+  T+T+
Sbjct: 607 WLEVSEVKGQDVVCIIKNTATL 672


>TC228991 similar to GB|AAQ22666.1|33589800|BT010197 At3g63530 {Arabidopsis
           thaliana;} , partial (46%)
          Length = 1167

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 31  ESQVVQIMLKPHEKIIAKPGSMCFMSGSVEMENAYLPENEVGIWQWLFGKTVTNI 85
           ES    + + P++  ++ PGS  + S S E+ N +LP  E+   +W +  T+T +
Sbjct: 288 ESVYWSMNMNPYKFGLSGPGSTSYYS-SYEV-NGHLPRMEIDRAEWEYPSTITTV 446


>BM093776 
          Length = 381

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 19/42 (44%)
 Frame = +2

Query: 49  PGSMCFMSGSVEMENAYLPENEVGIWQWLFGKTVTNIVVRNS 90
           P ++CF            P   V  W WL GK VTN+ + +S
Sbjct: 218 PSTLCFF--------LLFPSLLVN*WSWLIGK*VTNVCLFSS 319


>TC212416 homologue to UP|Q89QR3 (Q89QR3) Bll3061 protein, partial (60%)
          Length = 276

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 145 NVVAGAEVFLRQKLSGQGLAFILGGGSVVQKILEVGEV 182
           N + GAE  +    SG GL+ ++GGG +  +I +  ++
Sbjct: 161 NHIPGAEAAIEASKSGGGLSRLMGGGRMA*RITKEEQI 274


>AW705050 
          Length = 365

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = +1

Query: 109 PIDLATFNGEILCQPDAFLCSVNDVKVS 136
           P+    FNG+++C     LC+ N V VS
Sbjct: 109 PLQFPGFNGKLICPAYHELCNTNPVVVS 192


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,864,640
Number of Sequences: 63676
Number of extensions: 106253
Number of successful extensions: 451
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of query: 218
length of database: 12,639,632
effective HSP length: 93
effective length of query: 125
effective length of database: 6,717,764
effective search space: 839720500
effective search space used: 839720500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)