BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC087771.6 + phase: 0 /pseudo/partial
(461 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207459 similar to UP|Q94IH6 (Q94IH6) CjMDR1, partial (30%) 179 2e-45
TC229309 homologue to UP|Q9LJX0 (Q9LJX0) P-glycoprotein; multi-d... 162 4e-40
BU926948 similar to GP|27368865|e MDR-like ABC transporter {Oryz... 132 3e-31
TC234247 similar to GB|CAD59589.1|27368863|OSA535067 MDR-like AB... 94 4e-31
TC207563 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (... 97 5e-27
TC233020 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-gl... 117 1e-26
TC213020 weakly similar to UP|Q8GU71 (Q8GU71) MDR-like ABC trans... 114 1e-25
AW308906 112 3e-25
TC232373 weakly similar to UP|AB10_MOUSE (Q9JI39) ATP-binding ca... 105 3e-23
TC233514 similar to UP|Q8LPQ6 (Q8LPQ6) At4g25450/M7J2_180, parti... 105 3e-23
BM525681 similar to GP|6671365|gb P-glycoprotein {Gossypium hirs... 103 2e-22
TC219347 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC tr... 97 2e-20
TC220745 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-gl... 87 1e-17
TC213339 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (... 59 2e-16
TC207596 similar to UP|Q7GBY1 (Q7GBY1) Tonoplast ABC transporter... 81 1e-15
AW507715 weakly similar to GP|9294227|db P-glycoprotein; multi-d... 80 2e-15
TC215951 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance prot... 78 7e-15
TC205367 similar to UP|O24525 (O24525) Glutathione-conjugate tra... 71 9e-13
AW308969 similar to GP|6671365|gb P-glycoprotein {Gossypium hirs... 68 7e-12
TC229575 similar to UP|Q9LYS2 (Q9LYS2) ABC transporter-like prot... 64 1e-10
>TC207459 similar to UP|Q94IH6 (Q94IH6) CjMDR1, partial (30%)
Length = 1329
Score = 179 bits (455), Expect = 2e-45
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 4/256 (1%)
Frame = +1
Query: 210 AEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALL 269
+ + +G++RTV +F E++ + YK G + GL G G G +LF +A
Sbjct: 4 SNDAVGSIRTVASFCAEDKVMELYKNKCEGPMKTGIRQGLISGSGFGVSFFLLFCVYATS 183
Query: 270 VWYTSVVVHKNIANGGESFTTMLNVVISGLSLGQA---APDISAFIRAKAAAYPIFEMIE 326
+ + +V A + F + ++ + + Q+ APD S +AK+A IF +I+
Sbjct: 184 FYAGARLVDAGKATFSDVFRVFFALTMAAIGVSQSSSFAPDSS---KAKSATASIFGIID 354
Query: 327 RDTVSKKSSKTGRKLSKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVALVGGSG 386
+ + ++G L + G I+ V F YPSRPD+ IF +L+L I +GK VALVG SG
Sbjct: 355 KKSKIDPGDESGSTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGESG 534
Query: 387 SGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENILY 446
SGKSTV++L++RFY P SGQI LD +IREL LKWLRQQ+GLV+QEP LF +I+ NI Y
Sbjct: 535 SGKSTVIALLQRFYNPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPVLFNETIRANIAY 714
Query: 447 GK-DDATLEELKRAVK 461
GK DAT E+ A +
Sbjct: 715 GKGGDATEAEIIAAAE 762
>TC229309 homologue to UP|Q9LJX0 (Q9LJX0) P-glycoprotein; multi-drug
resistance related; ABC transporter-like protein,
partial (22%)
Length = 841
Score = 162 bits (409), Expect = 4e-40
Identities = 88/200 (44%), Positives = 126/200 (63%)
Frame = +1
Query: 262 LFLSWALLVWYTSVVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPI 321
L+ S AL++WY + +V K ++ + + +VI+ S+ + IR A +
Sbjct: 13 LYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSV 192
Query: 322 FEMIERDTVSKKSSKTGRKLSKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVAL 381
F +++R T + L G I+ V F+YPSRPDV +F +LNL I AG+ AL
Sbjct: 193 FSILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQAL 372
Query: 382 VGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIK 441
VG SGSGKS+V++LIERFY+PI+G++++D DIR+L+LK LR +IGLV QEPALFA SI
Sbjct: 373 VGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIF 552
Query: 442 ENILYGKDDATLEELKRAVK 461
ENI YGK+ AT E+ A +
Sbjct: 553 ENIAYGKEGATEAEVIEAAR 612
>BU926948 similar to GP|27368865|e MDR-like ABC transporter {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 447
Score = 132 bits (332), Expect = 3e-31
Identities = 65/142 (45%), Positives = 94/142 (65%)
Frame = +3
Query: 285 GESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKKSSKTGRKLSKL 344
G+ + L + + +SLGQ + +++AF +AAA+ IFE I R G++ +
Sbjct: 21 GQVMSIFLALFYASMSLGQVSTNLTAFAAGQAAAFKIFETINRHPDIDAYDTAGQQKDDI 200
Query: 345 DGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPIS 404
G I+ +VCFSYPSRPD IF ++ I +G ALVG SGSGKSTV+SLIERFY+P +
Sbjct: 201 SGDIELREVCFSYPSRPDALIFNGFSISISSGTNAALVGKSGSGKSTVISLIERFYDPQA 380
Query: 405 GQILLDKNDIRELDLKWLRQQI 426
G++L+D ++REL LKW+RQ+I
Sbjct: 381 GEVLIDGINLRELQLKWIRQKI 446
>TC234247 similar to GB|CAD59589.1|27368863|OSA535067 MDR-like ABC
transporter {Oryza sativa (japonica cultivar-group);} ,
partial (11%)
Length = 422
Score = 94.0 bits (232), Expect(2) = 4e-31
Identities = 46/79 (58%), Positives = 57/79 (71%)
Frame = +1
Query: 341 LSKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFY 400
L + G I+ +VCFSYP+RPD IF +L IP+G ALVG SGSGKSTVVSLIERFY
Sbjct: 1 LEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFY 180
Query: 401 EPISGQILLDKNDIRELDL 419
+P SG +L+D ++RE L
Sbjct: 181 DPQSGAVLIDGINLREFQL 237
Score = 59.3 bits (142), Expect(2) = 4e-31
Identities = 27/41 (65%), Positives = 33/41 (79%)
Frame = +2
Query: 421 WLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVK 461
W+RQ+IGLV+QEP LF SIKENI YGKD AT EE++ A +
Sbjct: 242 WIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAE 364
>TC207563 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (24%)
Length = 1164
Score = 97.1 bits (240), Expect(2) = 5e-27
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +1
Query: 375 AGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVNQEPA 434
AGK +ALVG SG GKS++++LI+RFY+P SG++++D DIR+ +LK LR+ I +V QEP
Sbjct: 247 AGKTLALVGPSGCGKSSIIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPC 426
Query: 435 LFATSIKENILYGKDDATLEELKRA 459
LFAT+I ENI YG + AT E+ A
Sbjct: 427 LFATTIYENIAYGHESATEAEIIEA 501
Score = 42.4 bits (98), Expect(2) = 5e-27
Identities = 23/68 (33%), Positives = 39/68 (56%), Gaps = 1/68 (1%)
Frame = +3
Query: 305 APDISAFIRAKAAAYPIFEMIERDTVSKKSSKTGRKL-SKLDGHIQFNDVCFSYPSRPDV 363
APD FI+ A +FE+++R T + + + +L G ++ V FSYP+RPD+
Sbjct: 42 APD---FIKGGQAMRSVFELLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDM 212
Query: 364 GIFTNLNL 371
+F +L+L
Sbjct: 213 PVFRDLSL 236
>TC233020 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-glycoprotein,
partial (15%)
Length = 605
Score = 117 bits (292), Expect = 1e-26
Identities = 56/91 (61%), Positives = 75/91 (81%)
Frame = +1
Query: 371 LDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVN 430
L +PAGK VALVG SGSGKSTV++L++RFY+P G++ +D I++L LKWLR +GLV+
Sbjct: 25 LRVPAGKRVALVGESGSGKSTVIALLQRFYDPCGGEVRVDGVGIQKLQLKWLRSCMGLVS 204
Query: 431 QEPALFATSIKENILYGKDDATLEELKRAVK 461
QEPALFATSIK+NIL+GK+DAT +++ A K
Sbjct: 205 QEPALFATSIKDNILFGKEDATQDQVVEAAK 297
>TC213020 weakly similar to UP|Q8GU71 (Q8GU71) MDR-like ABC transporter,
partial (18%)
Length = 864
Score = 114 bits (284), Expect = 1e-25
Identities = 56/94 (59%), Positives = 77/94 (81%)
Frame = +1
Query: 368 NLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIG 427
NLNL +PAGK +A+VG SGSGKSTV+SL+ RFY+P SG +L+D+ DI+ L+L+ LR +IG
Sbjct: 4 NLNLRVPAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGLVLVDECDIKNLNLRSLRLRIG 183
Query: 428 LVNQEPALFATSIKENILYGKDDATLEELKRAVK 461
LV QEPALF+T++ ENI YGK++A+ E+ +A K
Sbjct: 184 LVQQEPALFSTTVYENIKYGKEEASEIEVMKAAK 285
>AW308906
Length = 445
Score = 112 bits (280), Expect = 3e-25
Identities = 60/133 (45%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Frame = +3
Query: 305 APDISAFIRAKAAAYPIFEMIERDTVSKKSSKTGRKL-SKLDGHIQFNDVCFSYPSRPDV 363
APD FI+ A F++++R T + + L G ++ V FSYP+RPD+
Sbjct: 54 APD---FIKGGHAMRSAFDLLDRRTEIEPDDPDATPVPDSLRGEVELKHVDFSYPTRPDM 224
Query: 364 GIFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLR 423
+F NL+L AGK +ALVG SG GKS+V++LI+RFY+P SGQ+++D DIR+ +LK LR
Sbjct: 225 SVFRNLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGQVMIDGKDIRKYNLKSLR 404
Query: 424 QQIGLVNQEPALF 436
+ I +V QEP LF
Sbjct: 405 RHIAVVPQEPCLF 443
>TC232373 weakly similar to UP|AB10_MOUSE (Q9JI39) ATP-binding cassette,
sub-family B, member 10, mitochondrial precursor
(ATP-binding cassette transporter 10) (ABC transporter
10 protein) (ABC-mitochondrial erythroid protein)
(ABC-me protein), partial (24%)
Length = 742
Score = 105 bits (263), Expect = 3e-23
Identities = 56/92 (60%), Positives = 69/92 (74%), Gaps = 1/92 (1%)
Frame = +1
Query: 371 LDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVN 430
L I AG+ VAL G SGSGKSTV+SL++RFYEP SGQI LD +I++L LKW RQQ+GLV+
Sbjct: 1 LTIHAGETVALAGESGSGKSTVISLLQRFYEPDSGQITLDGTEIQKLQLKWFRQQMGLVS 180
Query: 431 QEPALFATSIKENILYGK-DDATLEELKRAVK 461
QEP LF +I+ NI YGK DAT E+ A +
Sbjct: 181 QEPVLFNDTIRTNIAYGKGGDATEAEIIAATE 276
>TC233514 similar to UP|Q8LPQ6 (Q8LPQ6) At4g25450/M7J2_180, partial (20%)
Length = 505
Score = 105 bits (263), Expect = 3e-23
Identities = 61/130 (46%), Positives = 76/130 (57%), Gaps = 4/130 (3%)
Frame = +3
Query: 336 KTGRKLSKL--DGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVALVGGSGSGKSTVV 393
KT L L G I DV FSYP RPDV I LNL + G + ALVG SG+GKSTVV
Sbjct: 93 KTSSNLFSLAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKFGTVTALVGPSGAGKSTVV 272
Query: 394 SLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYG--KDDA 451
L+ FYEP SG I + D+R D + + +VNQEP LF+ S+ ENI YG +D
Sbjct: 273 QLLSHFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDV 452
Query: 452 TLEELKRAVK 461
+ E++ A K
Sbjct: 453 SKEDVIXAAK 482
>BM525681 similar to GP|6671365|gb P-glycoprotein {Gossypium hirsutum},
partial (11%)
Length = 428
Score = 103 bits (257), Expect = 2e-22
Identities = 58/141 (41%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Frame = +2
Query: 262 LFLSWALLVWYTSVVVHKNIANGGESFTTMLNVVISGLSLGQA---APDISAFIRAKAAA 318
+F S+ L +WY SV++ K +A+ ++++ L++G+ APD+ ++
Sbjct: 20 IFSSYGLALWYGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALAPDL---LKGNQMV 190
Query: 319 YPIFEMIERDTVSKKSSKTGRKLSKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKI 378
+FE+++R S S + G +L +DG I+ + FSYPSRPDV IF + NL +PAGK
Sbjct: 191 ASVFEVMDRK--SGISCEVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKS 364
Query: 379 VALVGGSGSGKSTVVSLIERF 399
VALVG SGSGKS+V+SLI RF
Sbjct: 365 VALVGQSGSGKSSVISLILRF 427
>TC219347 similar to UP|Q9LF78 (Q9LF78) Mitochondrial half-ABC transporter,
partial (36%)
Length = 1085
Score = 96.7 bits (239), Expect = 2e-20
Identities = 55/129 (42%), Positives = 80/129 (61%)
Frame = +1
Query: 333 KSSKTGRKLSKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVALVGGSGSGKSTV 392
+ + + L G IQF +V FSY + I ++ +PAGK VA+VG SGSGKST+
Sbjct: 7 RDKENAKPLKFNGGRIQFENVHFSYLTERK--ILDGISFVVPAGKSVAIVGTSGSGKSTI 180
Query: 393 VSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDAT 452
+ L+ RF++P SG I +D +IRE+ L+ LR+ IG+V Q+ LF +I NI YG+ AT
Sbjct: 181 LRLLFRFFDPHSGSIKIDDQNIREVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSAT 360
Query: 453 LEELKRAVK 461
EE+ A +
Sbjct: 361 EEEVYEAAQ 387
>TC220745 similar to UP|Q9LHD1 (Q9LHD1) Multidrug resistance p-glycoprotein,
partial (18%)
Length = 1050
Score = 87.4 bits (215), Expect = 1e-17
Identities = 43/85 (50%), Positives = 58/85 (67%)
Frame = +3
Query: 363 VGIFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWL 422
V IF ++ I A + ALVG SGSG ST++ LIERFY+P+ G + +D DI+ L+ L
Sbjct: 3 VMIFQGFSIXIDAXRSTALVGQSGSGXSTIIGLIERFYDPMKGIVTIDGRDIKSYHLRSL 182
Query: 423 RQQIGLVNQEPALFATSIKENILYG 447
R+ I LV+QEP LF +I+ENI YG
Sbjct: 183 RKHIALVSQEPTLFGGTIRENIAYG 257
>TC213339 similar to UP|Q9ZRG2 (Q9ZRG2) P-glycoprotein, partial (15%)
Length = 582
Score = 58.9 bits (141), Expect(2) = 2e-16
Identities = 29/57 (50%), Positives = 40/57 (69%)
Frame = +1
Query: 403 ISGQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRA 459
+ GQ+++D DIR+ +LK LR+ I +V QEP LFAT+I ENI YG D A+ E+ A
Sbjct: 319 VLGQVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSASDAEIIEA 489
Score = 45.1 bits (105), Expect(2) = 2e-16
Identities = 27/106 (25%), Positives = 49/106 (45%), Gaps = 1/106 (0%)
Frame = +3
Query: 272 YTSVVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVS 331
Y S +V I++ + + +++S + FI+ A F++++R T
Sbjct: 15 YASWLVKHGISDFSNTIRVFMVLMVSANGAAETLTLAPDFIKGGHAMRSAFDLLDRRTEI 194
Query: 332 KKSSKTGRKL-SKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAG 376
+ + L G ++ V FSYP+RPD+ +F NL+L AG
Sbjct: 195 EPDDPDATPVPDSLRGEVELKHVDFSYPTRPDMSVFRNLSLRARAG 332
>TC207596 similar to UP|Q7GBY1 (Q7GBY1) Tonoplast ABC transporter IDI7,
partial (35%)
Length = 1076
Score = 80.9 bits (198), Expect = 1e-15
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +2
Query: 371 LDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVN 430
L + G VALVG SG GKST+ +LIERFY+P G+ILL+ + E+ K L ++I +V+
Sbjct: 5 LKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVS 184
Query: 431 QEPALFATSIKENILYGKD 449
QEP LF SI+ENI YG D
Sbjct: 185 QEPTLFNCSIEENIAYGFD 241
>AW507715 weakly similar to GP|9294227|db P-glycoprotein; multi-drug
resistance related; ABC transporter-like protein
{Arabidopsis thaliana}, partial (17%)
Length = 655
Score = 79.7 bits (195), Expect = 2e-15
Identities = 41/93 (44%), Positives = 63/93 (67%)
Frame = +2
Query: 369 LNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGL 428
+ L I AG I ALVG + SGK++V++LI+ FY+PI+ ++++D DI + +LK +R +IGL
Sbjct: 2 IRLRIRAGHIQALVGANSSGKTSVIALIDTFYDPIAVKVMVDGKDIMKSNLKSMRLKIGL 181
Query: 429 VNQEPALFATSIKENILYGKDDATLEELKRAVK 461
EPALFA SI +NI Y + A ++ A +
Sbjct: 182 APLEPALFAASIVDNIAYATEGAAEADVIAAAR 280
>TC215951 similar to UP|Q9SXT3 (Q9SXT3) Multidrug resistance protein
(Fragment), partial (84%)
Length = 1226
Score = 78.2 bits (191), Expect = 7e-15
Identities = 39/89 (43%), Positives = 55/89 (60%)
Frame = +2
Query: 359 SRPDVGIFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELD 418
S V I +NL+IP G IV ++G SGSGKST + + R +EP S + LD DI LD
Sbjct: 263 SEDGVPILKGINLEIPEGVIVGVIGPSGSGKSTFLRALNRLWEPPSASVFLDAQDICHLD 442
Query: 419 LKWLRQQIGLVNQEPALFATSIKENILYG 447
+ LR+ + ++ Q PALF S+ +N+ YG
Sbjct: 443 VLSLRRNVAMLFQLPALFEGSVADNVRYG 529
>TC205367 similar to UP|O24525 (O24525) Glutathione-conjugate transporter
AtMRP4, partial (23%)
Length = 1548
Score = 71.2 bits (173), Expect = 9e-13
Identities = 37/101 (36%), Positives = 59/101 (57%), Gaps = 1/101 (0%)
Frame = +2
Query: 345 DGHIQFNDVCFSYPSRPDVG-IFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPI 403
+GH+ D+ Y RP+ + + L I G+ + +VG +GSGKST++ + R EP
Sbjct: 332 EGHVDIKDLQVRY--RPNTPLVLKGITLSINGGEKIGVVGRTGSGKSTLIQVFFRLVEPT 505
Query: 404 SGQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENI 444
G+I++D DI L L LR + G++ QEP LF +++ NI
Sbjct: 506 GGKIIIDGIDISALGLHDLRSRFGIIPQEPVLFEGTVRSNI 628
>AW308969 similar to GP|6671365|gb P-glycoprotein {Gossypium hirsutum},
partial (9%)
Length = 449
Score = 68.2 bits (165), Expect = 7e-12
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Frame = +3
Query: 272 YTSVVVHKNIANGGESFTTMLNVVISGLSLGQA---APDISAFIRAKAAAYPIFEMIERD 328
Y SV++ K +A+ ++++ L++G+ APD+ ++ +FE+++R
Sbjct: 126 YGSVLMEKELASFKSIMKAFFVLIVTALAMGETLALAPDL---LKGNQMVASVFEVMDRK 296
Query: 329 TVSKKSSKTGRKLSKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVAL 381
S S + G +L +DG I+ + FSYPSRPDV IF + NL +PAGK VAL
Sbjct: 297 --SGISCEVGEELKTVDGTIELKRINFSYPSRPDVIIFKDFNLRVPAGKSVAL 449
>TC229575 similar to UP|Q9LYS2 (Q9LYS2) ABC transporter-like protein, partial
(15%)
Length = 623
Score = 63.9 bits (154), Expect = 1e-10
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +1
Query: 346 GHIQFNDVCFSYPSRPDVG-IFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPIS 404
G +Q N++ Y RPD + + G + +VG +GSGKST++ + R EP
Sbjct: 55 GRVQINELQIRY--RPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAG 228
Query: 405 GQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENI 444
G+I++D DI + L LR + G++ Q+P LF +++ N+
Sbjct: 229 GKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNL 348
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,689,527
Number of Sequences: 63676
Number of extensions: 280964
Number of successful extensions: 1789
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1785
length of query: 461
length of database: 12,639,632
effective HSP length: 101
effective length of query: 360
effective length of database: 6,208,356
effective search space: 2235008160
effective search space used: 2235008160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC087771.6