BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33214.1 31 aa
(31 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9BBR4 Cytochrome b6-f complex subunit VI [Lotus japon... 62 6e-09
UniRef100_P46612 Cytochrome b6-f complex subunit VI [Beta vulgaris] 53 3e-06
UniRef100_P56776 Cytochrome b6-f complex subunit VI [Arabidopsis... 52 4e-06
UniRef100_Q659Q2 Cytochrome b6-f complex subunit VI [Silene oste... 52 6e-06
UniRef100_Q68RY8 Cyt b6/f complex subunit VI [Panax ginseng] 52 6e-06
UniRef100_Q5QA80 PetL [Acorus gramineus] 50 2e-05
UniRef100_Q9M3L0 Cytochrome b6-f complex subunit VI [Spinacia ol... 50 2e-05
UniRef100_P12181 Cytochrome b6-f complex subunit VI [Nicotiana t... 49 3e-05
UniRef100_P19445 Cytochrome b6-f complex subunit VI [Zea mays] 49 3e-05
UniRef100_Q659P7 Cytochrome b6-f complex subunit VI [Silene pari... 49 4e-05
UniRef100_O20272 Cytochrome b6-f complex subunit VI [Populus del... 49 4e-05
UniRef100_Q6ENU6 Cytochrome b/f complex 3.5kD subunit [Saccharum... 48 8e-05
UniRef100_Q659Q0 Cytochrome b6-f complex subunit VI [Silene rotu... 47 1e-04
UniRef100_Q7YJV7 Cyt b6/f complex subunit VI [Calycanthus fertil... 47 1e-04
UniRef100_P58247 Cytochrome b6-f complex subunit VI [Triticum ae... 47 1e-04
UniRef100_P12180 Cytochrome b6-f complex subunit VI [Oryza sativa] 47 2e-04
UniRef100_Q9MTK4 Cytochrome b6-f complex subunit VI [Oenothera h... 47 2e-04
UniRef100_Q70XY8 Chloroplast genomic DNA, complete sequence [Amb... 46 3e-04
UniRef100_Q6EW35 Cyt b6/f complex subunit VI [Nymphaea alba] 45 4e-04
UniRef100_Q69VC5 Chloroplast cytochrome b6/f complex subunit VI_... 44 0.001
>UniRef100_Q9BBR4 Cytochrome b6-f complex subunit VI [Lotus japonicus]
Length = 31
Score = 61.6 bits (148), Expect = 6e-09
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLAVLTITSGLFISLRKLRLI
Sbjct: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
>UniRef100_P46612 Cytochrome b6-f complex subunit VI [Beta vulgaris]
Length = 31
Score = 52.8 bits (125), Expect = 3e-06
Identities = 25/31 (80%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>UniRef100_P56776 Cytochrome b6-f complex subunit VI [Arabidopsis thaliana]
Length = 31
Score = 52.0 bits (123), Expect = 4e-06
Identities = 26/31 (83%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTITSYFGFLLAALTITSVLFIGLSKIRLI 31
>UniRef100_Q659Q2 Cytochrome b6-f complex subunit VI [Silene ostenfeldii]
Length = 31
Score = 51.6 bits (122), Expect = 6e-06
Identities = 25/31 (80%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYFGFLLAALTITSVLFIGLNKIRLI 31
>UniRef100_Q68RY8 Cyt b6/f complex subunit VI [Panax ginseng]
Length = 31
Score = 51.6 bits (122), Expect = 6e-06
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLL LTITS LFI L K+RLI
Sbjct: 1 MPTITSYFGFLLVALTITSALFIGLSKIRLI 31
>UniRef100_Q5QA80 PetL [Acorus gramineus]
Length = 31
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLA TIT+ LFI L K+RLI
Sbjct: 1 MPTITSYFGFLLAASTITTALFIGLSKIRLI 31
>UniRef100_Q9M3L0 Cytochrome b6-f complex subunit VI [Spinacia oleracea]
Length = 31
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MSTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>UniRef100_P12181 Cytochrome b6-f complex subunit VI [Nicotiana tabacum]
Length = 31
Score = 49.3 bits (116), Expect = 3e-05
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
>UniRef100_P19445 Cytochrome b6-f complex subunit VI [Zea mays]
Length = 31
Score = 49.3 bits (116), Expect = 3e-05
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTIT LFISL K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITPALFISLNKIRLI 31
>UniRef100_Q659P7 Cytochrome b6-f complex subunit VI [Silene parishii]
Length = 31
Score = 48.9 bits (115), Expect = 4e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSY GFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYXGFLLAALTITSVLFIGLNKIRLI 31
>UniRef100_O20272 Cytochrome b6-f complex subunit VI [Populus deltoides]
Length = 31
Score = 48.9 bits (115), Expect = 4e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLL LTIT LFISL K+RLI
Sbjct: 1 MPTLTSYFGFLLVALTITLVLFISLSKIRLI 31
>UniRef100_Q6ENU6 Cytochrome b/f complex 3.5kD subunit [Saccharum officinarum]
Length = 31
Score = 47.8 bits (112), Expect = 8e-05
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTIT LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITPALFIGLNKIRLI 31
>UniRef100_Q659Q0 Cytochrome b6-f complex subunit VI [Silene rotundifolia]
Length = 31
Score = 47.0 bits (110), Expect = 1e-04
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSY GF LA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYXGFXLAALTITSVLFIGLNKIRLI 31
>UniRef100_Q7YJV7 Cyt b6/f complex subunit VI [Calycanthus fertilis var. ferax]
Length = 31
Score = 47.0 bits (110), Expect = 1e-04
Identities = 23/31 (74%), Positives = 24/31 (77%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLA TIT L I L K+RLI
Sbjct: 1 MPTITSYFGFLLAASTITPALLIGLNKIRLI 31
>UniRef100_P58247 Cytochrome b6-f complex subunit VI [Triticum aestivum]
Length = 31
Score = 47.0 bits (110), Expect = 1e-04
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTIT LFI L K+RLI
Sbjct: 1 MLTLTSYFGFLLAALTITPALFIGLNKIRLI 31
>UniRef100_P12180 Cytochrome b6-f complex subunit VI [Oryza sativa]
Length = 31
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LT+T LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTLTLALFIGLNKIRLI 31
>UniRef100_Q9MTK4 Cytochrome b6-f complex subunit VI [Oenothera hookeri]
Length = 31
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITS+FGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTITSFFGFLLAALTITSVLFIGLTKIRLI 31
>UniRef100_Q70XY8 Chloroplast genomic DNA, complete sequence [Amborella trichopoda]
Length = 31
Score = 45.8 bits (107), Expect = 3e-04
Identities = 23/31 (74%), Positives = 24/31 (77%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSY GFLLA TITS L I L K+RLI
Sbjct: 1 MPTITSYSGFLLAASTITSALLIGLNKIRLI 31
>UniRef100_Q6EW35 Cyt b6/f complex subunit VI [Nymphaea alba]
Length = 31
Score = 45.4 bits (106), Expect = 4e-04
Identities = 22/31 (70%), Positives = 23/31 (73%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTI SYFGFLL TIT LFI L K+RLI
Sbjct: 1 MPTIVSYFGFLLTASTITPALFIGLSKIRLI 31
>UniRef100_Q69VC5 Chloroplast cytochrome b6/f complex subunit VI_chloroplast [Oryza
sativa]
Length = 31
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/31 (70%), Positives = 24/31 (76%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYF FLLA LT+T LFI L K+RLI
Sbjct: 1 MLTITSYFSFLLAALTLTLALFIGLNKIRLI 31
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.338 0.151 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,295,489
Number of Sequences: 2790947
Number of extensions: 584293
Number of successful extensions: 3531
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3498
Number of HSP's gapped (non-prelim): 33
length of query: 31
length of database: 848,049,833
effective HSP length: 7
effective length of query: 24
effective length of database: 828,513,204
effective search space: 19884316896
effective search space used: 19884316896
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 69 (31.2 bits)
Description of BAB33214.1