BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33192.1 34 aa
(34 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_P34833 Photosystem II reaction center M protein [Pisum... 66 3e-10
UniRef100_Q6QXV8 Photosystem II M protein [Oryza sativa] 65 7e-10
UniRef100_P62109 Photosystem II reaction center M protein [Arabi... 65 7e-10
UniRef100_Q9MTM8 Photosystem II reaction center M protein [Oenot... 64 9e-10
UniRef100_Q70Y09 Chloroplast genomic DNA, complete sequence [Amb... 64 1e-09
UniRef100_P48189 Photosystem II reaction center M protein [Zea m... 63 2e-09
UniRef100_Q9XPS6 Photosystem II reaction center M protein [Triti... 62 6e-09
UniRef100_Q7YNW4 PsbM [Panax pseudoginseng var. bipinnatifidus] 60 2e-08
UniRef100_Q7YNV6 PsbM [Panax zingiberensis] 60 2e-08
UniRef100_P12168 Photosystem II reaction center M protein [March... 58 6e-08
UniRef100_Q85BK0 Photosystem II reaction center M protein [Antho... 58 8e-08
UniRef100_Q85FM6 Photosystem II M protein [Adiantum capillus-ven... 57 2e-07
UniRef100_Q5SCY3 Photosystem II protein M [Huperzia lucidula] 56 2e-07
UniRef100_Q8WI22 Photosystem II reaction center M protein [Psilo... 54 9e-07
UniRef100_Q9TL37 Photosystem II reaction center M protein [Nephr... 54 1e-06
UniRef100_Q8MA15 Photosystem II reaction center M protein [Chaet... 54 2e-06
UniRef100_P56325 Photosystem II reaction center M protein [Chlor... 53 2e-06
UniRef100_P48107 Photosystem II reaction center M protein [Cyano... 50 2e-05
UniRef100_P92277 Photosystem II reaction center M protein [Chlam... 50 2e-05
UniRef100_P41608 Photosystem II reaction center M protein [Pinus... 49 5e-05
>UniRef100_P34833 Photosystem II reaction center M protein [Pisum sativum]
Length = 34
Score = 65.9 bits (159), Expect = 3e-10
Identities = 34/34 (100%), Positives = 34/34 (100%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
>UniRef100_Q6QXV8 Photosystem II M protein [Oryza sativa]
Length = 69
Score = 64.7 bits (156), Expect = 7e-10
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 36 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 69
>UniRef100_P62109 Photosystem II reaction center M protein [Arabidopsis thaliana]
Length = 34
Score = 64.7 bits (156), Expect = 7e-10
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
>UniRef100_Q9MTM8 Photosystem II reaction center M protein [Oenothera hookeri]
Length = 34
Score = 64.3 bits (155), Expect = 9e-10
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQS+
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSE 34
>UniRef100_Q70Y09 Chloroplast genomic DNA, complete sequence [Amborella trichopoda]
Length = 35
Score = 63.5 bits (153), Expect = 1e-09
Identities = 33/33 (100%), Positives = 33/33 (100%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVNILAFIATALFILVPTAFLLIIYVKTVSQS
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
>UniRef100_P48189 Photosystem II reaction center M protein [Zea mays]
Length = 34
Score = 63.2 bits (152), Expect = 2e-09
Identities = 32/34 (94%), Positives = 33/34 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKT SQ+D
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTASQND 34
>UniRef100_Q9XPS6 Photosystem II reaction center M protein [Triticum aestivum]
Length = 34
Score = 61.6 bits (148), Expect = 6e-09
Identities = 31/34 (91%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPT+FLLIIYVKTVSQ++
Sbjct: 1 MEVNILAFIATALFILVPTSFLLIIYVKTVSQNN 34
>UniRef100_Q7YNW4 PsbM [Panax pseudoginseng var. bipinnatifidus]
Length = 36
Score = 60.1 bits (144), Expect = 2e-08
Identities = 31/33 (93%), Positives = 32/33 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVNILAFIATALFILVPTAFLLIIYVKT SQ+
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTESQN 33
>UniRef100_Q7YNV6 PsbM [Panax zingiberensis]
Length = 36
Score = 60.1 bits (144), Expect = 2e-08
Identities = 31/33 (93%), Positives = 32/33 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVNILAFIATALFILVPTAFLLIIYVKT SQ+
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTESQN 33
>UniRef100_P12168 Photosystem II reaction center M protein [Marchantia polymorpha]
Length = 34
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVNILAFIATALFIL+PTAFLLI+YV+T SQ+
Sbjct: 1 MEVNILAFIATALFILIPTAFLLILYVQTASQN 33
>UniRef100_Q85BK0 Photosystem II reaction center M protein [Anthoceros formosae]
Length = 34
Score = 57.8 bits (138), Expect = 8e-08
Identities = 28/32 (87%), Positives = 31/32 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
MEVNILAFIATALFIL+PTAFLLI+YV+T SQ
Sbjct: 1 MEVNILAFIATALFILIPTAFLLILYVQTASQ 32
>UniRef100_Q85FM6 Photosystem II M protein [Adiantum capillus-veneris]
Length = 35
Score = 56.6 bits (135), Expect = 2e-07
Identities = 25/34 (73%), Positives = 33/34 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAF+ATALFIL+PTAFLLI+Y++T +Q++
Sbjct: 1 MEVNILAFVATALFILIPTAFLLILYIQTAAQNN 34
>UniRef100_Q5SCY3 Photosystem II protein M [Huperzia lucidula]
Length = 34
Score = 56.2 bits (134), Expect = 2e-07
Identities = 27/34 (79%), Positives = 32/34 (93%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFIL+PTAF LI+YV+T SQ++
Sbjct: 1 MEVNILAFIATALFILIPTAFSLILYVQTASQNN 34
>UniRef100_Q8WI22 Photosystem II reaction center M protein [Psilotum nudum]
Length = 34
Score = 54.3 bits (129), Expect = 9e-07
Identities = 27/34 (79%), Positives = 31/34 (90%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFI +PTAFLLI YV+T +QS+
Sbjct: 1 MEVNILAFIATALFISIPTAFLLIPYVQTATQSN 34
>UniRef100_Q9TL37 Photosystem II reaction center M protein [Nephroselmis olivacea]
Length = 34
Score = 53.9 bits (128), Expect = 1e-06
Identities = 25/34 (73%), Positives = 30/34 (87%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNIL IATALFI++PT+FLLI+YVKT SQ +
Sbjct: 1 MEVNILGLIATALFIIIPTSFLLILYVKTASQQN 34
>UniRef100_Q8MA15 Photosystem II reaction center M protein [Chaetosphaeridium
globosum]
Length = 34
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/31 (83%), Positives = 29/31 (92%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVS 31
MEVNILA IATALF+L+PTAFLLI+YVKT S
Sbjct: 1 MEVNILAVIATALFVLIPTAFLLILYVKTES 31
>UniRef100_P56325 Photosystem II reaction center M protein [Chlorella vulgaris]
Length = 36
Score = 53.1 bits (126), Expect = 2e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
MEVNIL IATALFI++PT+FLLI+YVKT SQ
Sbjct: 1 MEVNILGVIATALFIIIPTSFLLILYVKTASQ 32
>UniRef100_P48107 Photosystem II reaction center M protein [Cyanophora paradoxa]
Length = 38
Score = 50.1 bits (118), Expect = 2e-05
Identities = 22/33 (66%), Positives = 30/33 (90%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVNIL IATALFI++PT+FLLI+Y++TV+ +
Sbjct: 1 MEVNILGLIATALFIVIPTSFLLILYIQTVASA 33
>UniRef100_P92277 Photosystem II reaction center M protein [Chlamydomonas
reinhardtii]
Length = 34
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/34 (67%), Positives = 27/34 (78%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNI ATALFI++PT+FLLI+YVKT S D
Sbjct: 1 MEVNIYGLTATALFIIIPTSFLLILYVKTASTQD 34
>UniRef100_P41608 Photosystem II reaction center M protein [Pinus thunbergii]
Length = 37
Score = 48.5 bits (114), Expect = 5e-05
Identities = 25/33 (75%), Positives = 26/33 (78%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVN LAFIA LF+ VPTAFLLI YVKT S S
Sbjct: 1 MEVNTLAFIAVLLFLAVPTAFLLIPYVKTASAS 33
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.334 0.144 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,469,888
Number of Sequences: 2790947
Number of extensions: 520901
Number of successful extensions: 4599
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4570
Number of HSP's gapped (non-prelim): 29
length of query: 34
length of database: 848,049,833
effective HSP length: 10
effective length of query: 24
effective length of database: 820,140,363
effective search space: 19683368712
effective search space used: 19683368712
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 69 (31.2 bits)
Description of BAB33192.1