BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33214.1 31 aa
(31 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PETL_LOTJA (Q9BBR4) Cytochrome b6-f complex subunit VI (Cytochro... 62 4e-10
PETL_BETVU (P46612) Cytochrome b6-f complex subunit VI (Cytochro... 53 2e-07
PETL_ARATH (P56776) Cytochrome b6-f complex subunit VI (Cytochro... 52 3e-07
PETL_SPIOL (Q9M3L0) Cytochrome b6-f complex subunit VI (Cytochro... 50 2e-06
PETL_TOBAC (P12181) Cytochrome b6-f complex subunit VI (Cytochro... 49 2e-06
PETL_MAIZE (P19445) Cytochrome b6-f complex subunit VI (Cytochro... 49 2e-06
PETL_POPDE (O20272) Cytochrome b6-f complex subunit VI (Cytochro... 49 3e-06
PETL_WHEAT (P58247) Cytochrome b6-f complex subunit VI (Cytochro... 47 1e-05
PETL_ORYSA (P12180) Cytochrome b6-f complex subunit VI (Cytochro... 47 1e-05
PETL_OENHO (Q9MTK4) Cytochrome b6-f complex subunit VI (Cytochro... 47 1e-05
PETL_ANTFO (Q85AP7) Cytochrome b6-f complex subunit VI (Cytochro... 37 0.011
PETL_PINTH (P52805) Cytochrome b6-f complex subunit VI (Cytochro... 35 0.040
PETL_PSINU (Q8WI03) Cytochrome b6-f complex subunit VI (Cytochro... 35 0.052
PETL_CHAGL (Q8M9Y3) Cytochrome b6-f complex subunit VI (Cytochro... 34 0.068
PETL_MARPO (P12179) Cytochrome b6-f complex subunit VI (Cytochro... 33 0.12
PETL_NEPOL (Q9TKY9) Cytochrome b6-f complex subunit VI (Cytochro... 32 0.26
PETL_ADICA (Q85FK4) Cytochrome b6-f complex subunit VI (Cytochro... 32 0.26
PETL_MESVI (Q9MUN4) Cytochrome b6-f complex subunit VI (Cytochro... 31 0.58
PETL_CHLRE (P50369) Cytochrome b6-f complex subunit VI (Cytochro... 30 1.3
YJGN_SALTY (Q08022) Hypothetical protein yjgN (ORF X) 27 8.3
>PETL_LOTJA (Q9BBR4) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 61.6 bits (148), Expect = 4e-10
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLAVLTITSGLFISLRKLRLI
Sbjct: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
>PETL_BETVU (P46612) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 52.8 bits (125), Expect = 2e-07
Identities = 25/31 (80%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>PETL_ARATH (P56776) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 52.0 bits (123), Expect = 3e-07
Identities = 26/31 (83%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTITSYFGFLLAALTITSVLFIGLSKIRLI 31
>PETL_SPIOL (Q9M3L0) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MSTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>PETL_TOBAC (P12181) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
>PETL_MAIZE (P19445) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 49.3 bits (116), Expect = 2e-06
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTIT LFISL K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITPALFISLNKIRLI 31
>PETL_POPDE (O20272) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 48.9 bits (115), Expect = 3e-06
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLL LTIT LFISL K+RLI
Sbjct: 1 MPTLTSYFGFLLVALTITLVLFISLSKIRLI 31
>PETL_WHEAT (P58247) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 47.0 bits (110), Expect = 1e-05
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTIT LFI L K+RLI
Sbjct: 1 MLTLTSYFGFLLAALTITPALFIGLNKIRLI 31
>PETL_ORYSA (P12180) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 46.6 bits (109), Expect = 1e-05
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LT+T LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTLTLALFIGLNKIRLI 31
>PETL_OENHO (Q9MTK4) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 46.6 bits (109), Expect = 1e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITS+FGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTITSFFGFLLAALTITSVLFIGLTKIRLI 31
>PETL_ANTFO (Q85AP7) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 37.0 bits (84), Expect = 0.011
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+ SYFGFL A LT+ LFI L K++LI
Sbjct: 1 MLTLFSYFGFLFAALTLALVLFIGLNKIQLI 31
>PETL_PINTH (P52805) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 62
Score = 35.0 bits (79), Expect = 0.040
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 3 TITSYFGFLLAVLTITSGLFISLRKLRLI 31
TI SYFGFLLA + T LFIS K++LI
Sbjct: 18 TIISYFGFLLASIIFTLVLFISSSKIQLI 46
>PETL_PSINU (Q8WI03) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 34.7 bits (78), Expect = 0.052
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+ SYFG LLA L T LFI L K++LI
Sbjct: 1 MLTLLSYFGLLLAALISTLVLFIGLNKVKLI 31
>PETL_CHAGL (Q8M9Y3) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 34.3 bits (77), Expect = 0.068
Identities = 15/31 (48%), Positives = 23/31 (73%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M +I +YFG L +LTIT +F++L K++LI
Sbjct: 1 MISILTYFGILFGILTITVIIFVALNKIQLI 31
>PETL_MARPO (P12179) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 33.5 bits (75), Expect = 0.12
Identities = 17/31 (54%), Positives = 21/31 (66%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TI SYF FL+ LT+ LFI L K++LI
Sbjct: 1 MLTIISYFLFLIGALTLALVLFIGLNKIQLI 31
>PETL_NEPOL (Q9TKY9) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 32.3 bits (72), Expect = 0.26
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+ SYFGFLL L T ++ LR ++LI
Sbjct: 1 MFTVISYFGFLLVALAFTLVTYLGLRAIQLI 31
>PETL_ADICA (Q85FK4) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 69
Score = 32.3 bits (72), Expect = 0.26
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T SYF FL+ LT T LF+ L K++++
Sbjct: 1 MFTSLSYFAFLMLALTFTLALFVGLNKIQIL 31
>PETL_MESVI (Q9MUN4) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 31
Score = 31.2 bits (69), Expect = 0.58
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+ SY G L A +T G+F+ LR ++LI
Sbjct: 1 MFTVVSYLGILAAFALVTIGIFLVLRTIQLI 31
>PETL_CHLRE (P50369) Cytochrome b6-f complex subunit VI
(Cytochrome b6f complex subunit petL)
Length = 43
Score = 30.0 bits (66), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (63%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKL 28
M TITSY G L+ L T G+++ L K+
Sbjct: 12 MLTITSYVGLLIGALVFTLGIYLGLLKV 39
>YJGN_SALTY (Q08022) Hypothetical protein yjgN (ORF X)
Length = 395
Score = 27.3 bits (59), Expect = 8.3
Identities = 11/24 (45%), Positives = 18/24 (74%)
Query: 7 YFGFLLAVLTITSGLFISLRKLRL 30
YF + LA++ +TS L+++LR L L
Sbjct: 280 YFLYFLAIIVVTSYLYVALRNLFL 303
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.338 0.151 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,713,301
Number of Sequences: 164201
Number of extensions: 39648
Number of successful extensions: 255
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 20
length of query: 31
length of database: 59,974,054
effective HSP length: 7
effective length of query: 24
effective length of database: 58,824,647
effective search space: 1411791528
effective search space used: 1411791528
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)
Description of BAB33214.1