BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33196.1 1332 aa
(1332 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC... 2658 0.0
RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC... 2132 0.0
RPC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC... 2009 0.0
RPC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC... 1989 0.0
RPC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC... 1963 0.0
RPC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC... 1954 0.0
RPC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC... 1921 0.0
RPC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC... 1884 0.0
RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC... 1880 0.0
RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC... 1845 0.0
RPC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2... 1734 0.0
RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC... 1255 0.0
RPC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC... 1214 0.0
RPC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC... 1208 0.0
RPC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC... 938 0.0
RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC... 900 0.0
RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC... 893 0.0
RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC... 874 0.0
RPC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC... 753 0.0
RPC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC... 741 0.0
>RPC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1332
Score = 2658 bits (6889), Expect = 0.0
Identities = 1332/1332 (100%), Positives = 1332/1332 (100%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID
Sbjct: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI
Sbjct: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII
Sbjct: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN
Sbjct: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSN 540
SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSN
Sbjct: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSN 540
Query: 541 LLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSG 600
LLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSG
Sbjct: 541 LLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSG 600
Query: 601 IAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNS 660
IAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNS
Sbjct: 601 IAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNS 660
Query: 661 IIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMV 720
IIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMV
Sbjct: 661 IIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMV 720
Query: 721 KKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL 780
KKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL
Sbjct: 721 KKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL 780
Query: 781 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 840
ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI
Sbjct: 781 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 840
Query: 841 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI 900
RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI
Sbjct: 841 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI 900
Query: 901 RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGV 960
RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGV
Sbjct: 901 RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGV 960
Query: 961 APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIIL 1020
APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIIL
Sbjct: 961 APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIIL 1020
Query: 1021 NPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRL 1080
NPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRL
Sbjct: 1021 NPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRL 1080
Query: 1081 ANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1140
ANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM
Sbjct: 1081 ANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1140
Query: 1141 NLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEI 1200
NLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEI
Sbjct: 1141 NLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEI 1200
Query: 1201 IVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQS 1260
IVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQS
Sbjct: 1201 IVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQS 1260
Query: 1261 FISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKI 1320
FISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKI
Sbjct: 1261 FISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKI 1320
Query: 1321 TLETIKIIRGRN 1332
TLETIKIIRGRN
Sbjct: 1321 TLETIKIIRGRN 1332
>RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1384
Score = 2132 bits (5523), Expect = 0.0
Identities = 1086/1361 (79%), Positives = 1191/1361 (86%), Gaps = 38/1361 (2%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVIGGTAIKR+ISRLIDHFGMAYTSHILDQVKTLGFRQAT TSISLGID
Sbjct: 5 MAERANLVFHNKVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATDTSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS ILE+HHHYGNVHAVEKLRQSIEIWYATSEY RQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSFILEQHHHYGNVHAVEKLRQSIEIWYATSEYFRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT++GISVNT+N MM ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIQGISVNTQNGMMPERIW 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY GSRCI VRNQDIGIGLINRF QTQPI IRTPFTCRNTSWICRL
Sbjct: 245 IQTLIGRVLADDIYRGSRCIAVRNQDIGIGLINRFKTLQTQPISIRTPFTCRNTSWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYG+SP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE VR+P NGKI
Sbjct: 305 CYGQSPTHGHLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPYNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNE+ +PTRTRHGHPAFLCYIDLYVTIES DI+HNV IPPKSFLLVQN+QYVKSEQ+I
Sbjct: 365 QFNEDLVHPTRTRHGHPAFLCYIDLYVTIESGDIIHNVTIPPKSFLLVQNNQYVKSEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGTYT NLKEKVRKH++SD EGEMHWST++YH SEF YSNVHILPKTSHLWILSG
Sbjct: 425 AEIRAGTYTFNLKEKVRKHVYSDLEGEMHWSTDVYHASEFRYSNVHILPKTSHLWILSGK 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
S++S +VS S+ KDQDQM+ H L T +R+ N L S +VR
Sbjct: 485 SYRSGSVSFSIRKDQDQMNIHYLSTGERDFCNLLASKKKVRHKLFRFNPSDKKERRISDY 544
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVE 573
+ DHCHF HPTI DT++LLAK+RRNR IIPF F+SI+ER+ ELM IS+E
Sbjct: 545 SIFNQIISIDHCHFTHPTIFHDTTDLLAKRRRNRLIIPFQFQSIQERDKELMLASSISIE 604
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKED-LIEYRGIREFKPKYQ 632
IPI+GI +NSILAYFDDPQYRTQSSGI KY+TIGI+SIF+KED LIEY+G++EFK KYQ
Sbjct: 605 IPINGIFRRNSILAYFDDPQYRTQSSGITKYRTIGINSIFKKEDFLIEYQGVKEFKTKYQ 664
Query: 633 IKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELK 692
IKVD+FFFIP+EVHIL ESSSIMVRNNSI+ V+T ITLN +SRV GLVR+EK KKKIELK
Sbjct: 665 IKVDQFFFIPEEVHILPESSSIMVRNNSIVEVDTLITLNIRSRVRGLVRLEKKKKKIELK 724
Query: 693 IFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVR 752
IFSGDI+FPGE+DKIS+HSA+LIPP V KKNSKE K K NW Y+QWIT TKKKYFVLVR
Sbjct: 725 IFSGDIYFPGEMDKISRHSAVLIPPRTV-KKNSKEKKMK-NWIYVQWITITKKKYFVLVR 782
Query: 753 PVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLV 812
PVILY+IAD INLVKLFPQD+F+E DNLELKV+N+IL GNGKSIRGI DTSIQLVRTCLV
Sbjct: 783 PVILYEIADRINLVKLFPQDMFQERDNLELKVINYILSGNGKSIRGISDTSIQLVRTCLV 842
Query: 813 LNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNE 872
LNW++D+K SSIE A ASFVE+S GL+RYFLRIDLVKSHISYI KRNDPSS
Sbjct: 843 LNWDQDKKFSSIENAHASFVEISIKGLVRYFLRIDLVKSHISYISKRNDPSSE---KKEG 899
Query: 873 SDRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNN 929
SD N+NPF+SIY K +Q+S +Q GT+R LL NKE + F+ILSSSNCFQ+ FN+
Sbjct: 900 SDHTNMNPFYSIYIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFQIRSFNH 959
Query: 930 VKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLN 989
KY+NGIKE INQ +R+ IPIK SLGPLG+APQ+A+ F FY LITHN+IS I KN QL+
Sbjct: 960 GKYYNGIKEGINQIQRDAMIPIKNSLGPLGIAPQVAH-FDFYRLITHNQISII-KNGQLD 1017
Query: 990 KFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFIC 1049
K KETFQV +YY +DENERIYKPDL +NIILNPF+LNW F+H NYCEKTF I+SLGQFIC
Sbjct: 1018 KLKETFQVFQYYFLDENERIYKPDLCSNIILNPFYLNWHFLHHNYCEKTFTIMSLGQFIC 1077
Query: 1050 ENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTF 1109
ENVCIVQTKN P+LKSGQ++TVQMD VGIR ANPYLATPGAT+HGHYGE+L EGDILVTF
Sbjct: 1078 ENVCIVQTKNAPHLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTF 1137
Query: 1110 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAEL 1169
IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR+D WN RIT ILGIPW FLIGAEL
Sbjct: 1138 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAEL 1197
Query: 1170 TIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1229
TIAQSRISLVNKIQ+VYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLL
Sbjct: 1198 TIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLL 1257
Query: 1230 RAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 1289
RA+R GR+LEE+ICYR LLLGITKTSLNTQSFISEASFQETARVL+KAALRGRIDWLKGL
Sbjct: 1258 RAERAGRSLEEAICYRVLLLGITKTSLNTQSFISEASFQETARVLSKAALRGRIDWLKGL 1317
Query: 1290 KENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRG 1330
KEN+VLGG+IPVGTGFK+I +RS RQ K+T + + G
Sbjct: 1318 KENVVLGGMIPVGTGFKRIMNRSKQRQYNKMTRKKKNLFEG 1358
>RPC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1388
Score = 2009 bits (5204), Expect = 0.0
Identities = 1030/1358 (75%), Positives = 1148/1358 (83%), Gaps = 43/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLIDHFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 1 MAERANLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISV+ RN MM ERI
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIF 240
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRL
Sbjct: 241 IQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 300
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+I
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVI 420
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAG TLN KEKVRKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G
Sbjct: 421 AEIRAGISTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGR 480
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
+S V LS+ KDQDQM+ H L +R TSN V+N+Q R
Sbjct: 481 PCRSSLVYLSIHKDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDY 540
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVE 573
+C + ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+E
Sbjct: 541 SDLNRIICAGQYNLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIE 598
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI 633
IP++GI +NSILAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+
Sbjct: 599 IPVNGIFRRNSILAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQM 658
Query: 634 KVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKI 693
KVDRFFFIP+EVHIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKI
Sbjct: 659 KVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKI 718
Query: 694 FSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRP 753
FSGDIHFPGE DKIS+H+ +LIPP K+NSKESKK NW Y+Q IT +KKK+FVLVRP
Sbjct: 719 FSGDIHFPGETDKISRHTGVLIPPG-TGKRNSKESKKVKNWIYVQRITPSKKKFFVLVRP 777
Query: 754 VILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVL 813
V+ Y+I D INL LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVL
Sbjct: 778 VVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVL 837
Query: 814 NWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNES 873
NWN+D+KSSS EEA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N S
Sbjct: 838 NWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGS 897
Query: 874 DRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
D NINPF SIY K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +V
Sbjct: 898 DCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDV 957
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
KYH+ IK+ I K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+
Sbjct: 958 KYHSVIKKSI---KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDN 1013
Query: 991 FKETFQVI--KYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFI 1048
K+TFQVI KYYLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFI
Sbjct: 1014 LKQTFQVIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFI 1073
Query: 1049 CENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVT 1108
CENVCI KNGP LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVT
Sbjct: 1074 CENVCI--AKNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVT 1131
Query: 1109 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAE 1168
FIYEKSRSGDITQGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW FLIGAE
Sbjct: 1132 FIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAE 1191
Query: 1169 LTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1228
LTIAQSRISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFSPGELIGL
Sbjct: 1192 LTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1251
Query: 1229 LRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1288
LRA+R GRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1252 LRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1311
Query: 1289 LKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
LKEN+VLGG+IPVGTGFK G ++Q I LET K
Sbjct: 1312 LKENVVLGGVIPVGTGFK--GLVHPSKQHNNIPLETKK 1347
>RPC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1389
Score = 1989 bits (5154), Expect = 0.0
Identities = 1029/1358 (75%), Positives = 1140/1358 (83%), Gaps = 46/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLI+HFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKAIDGTAMKRLISRLIEHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISV+ RN MM ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIF 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
QTLIGRVLADDIY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRL
Sbjct: 245 SQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+I
Sbjct: 365 KFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAG TLN KEKVRKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G
Sbjct: 425 AEIRAGISTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
KS V LS+ KDQDQM+ HSL +R TSN V+N+Q R
Sbjct: 485 PCKSSLVYLSIHKDQDQMNAHSLSGKQRYTSNLSVTNDQARQKLFSSGFSGKKEDRIPDY 544
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVE 573
+C + ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+E
Sbjct: 545 SDLNRIICTGQYNLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIE 602
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI 633
IP++GI +NSILAYFDDP+YR +SSGI KY TI HS+ +KEDLIEYRG++EF+PKYQ+
Sbjct: 603 IPVNGIFRRNSILAYFDDPRYRRKSSGIIKYGTIETHSVIKKEDLIEYRGVKEFRPKYQM 662
Query: 634 KVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKI 693
KVDRFFFIP+EVHIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKI
Sbjct: 663 KVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKI 722
Query: 694 FSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRP 753
FSGDIHFPGE DKIS+H+ +LIPP K NSKESKK W Y+Q IT +KKK+FVLVRP
Sbjct: 723 FSGDIHFPGETDKISRHTGLLIPPG-TGKINSKESKKVKKWIYVQRITPSKKKFFVLVRP 781
Query: 754 VILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVL 813
V+ Y+I D IN LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVL
Sbjct: 782 VVTYEITDGINFETLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVL 841
Query: 814 NWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNES 873
NWN+D+KSSS EEA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N S
Sbjct: 842 NWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGS 901
Query: 874 DRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
D NINPF SIY K IQQSL+Q GTI LLNRNKE +S IILSS+NC +MG +
Sbjct: 902 DCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSSANCSRMG---TL 958
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
KYH+ IK+ I K++ IPI+ SLGPLG I NF+S Y LITHN+I + LQL+
Sbjct: 959 KYHSVIKDSI---KKDPLIPIRNSLGPLGTCLPIENFYSSYRLITHNQI-LVTNYLQLDN 1014
Query: 991 FKETFQVI--KYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFI 1048
K+TFQVI KYYLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFI
Sbjct: 1015 LKQTFQVIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFI 1074
Query: 1049 CENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVT 1108
CENVCI KNGP LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVT
Sbjct: 1075 CENVCI--AKNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVT 1132
Query: 1109 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAE 1168
FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR++ WN+ IT ILGIPW FLIGAE
Sbjct: 1133 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNKCITRILGIPWGFLIGAE 1192
Query: 1169 LTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1228
LTIAQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL
Sbjct: 1193 LTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1252
Query: 1229 LRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1288
LRA+R GRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1253 LRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1312
Query: 1289 LKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
LKEN+VLGG+IPVGTGFK G ++Q I LET K
Sbjct: 1313 LKENVVLGGVIPVGTGFK--GLVHPSKQHNNIPLETKK 1348
>RPC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1361
Score = 1963 bits (5085), Expect = 0.0
Identities = 1010/1357 (74%), Positives = 1130/1357 (82%), Gaps = 47/1357 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLIDHFGMAYTSHILDQ+KTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWY+TSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYSTSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP+NPVHIMSFSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPYNPVHIMSFSGARGNVSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRR DCGT+RGISV+ +N M ERIL
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRRDCGTIRGISVSPQNSTMPERIL 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY+GSRCI RNQDIG+GL+NRFI +TQ I IRTPFTCR+ SWICRL
Sbjct: 245 IQTLIGRVLADDIYMGSRCIATRNQDIGVGLVNRFITLRTQLISIRTPFTCRSASWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 305 CYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNE+ +PTRTRHGHPAFLCYIDLYVTIES+DI+HNV IPPKSFLLVQNDQYV+SEQ+I
Sbjct: 365 QFNEDLVHPTRTRHGHPAFLCYIDLYVTIESDDILHNVNIPPKSFLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGT TLN KE+VRKHI+SDSEGEMHWST++YH EF Y NVH+LPKTSHLW+LSG
Sbjct: 425 AEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGK 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------RLCP--- 524
++S V SL KDQDQM+THSL + SN V+N+QV R+
Sbjct: 485 PYRSSVVPFSLSKDQDQMNTHSLSFEQIYISNPSVTNDQVKDKLSDSFSKKEDRITDYSE 544
Query: 525 ----DHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDG 578
HC+ ++P + D LLAKKRRNRFIIP F+ +ER ELM IS+EIPI+G
Sbjct: 545 LNRIGHCNLIYPAKNLD---LLAKKRRNRFIIP--FQGSQERKKELMSLSGISIEIPING 599
Query: 579 IIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRF 638
I KNSI AYFDDP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVDRF
Sbjct: 600 IFRKNSIFAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKEFRPKYQMKVDRF 659
Query: 639 FFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDI 698
FFIP+EVHIL+ SSSIMVRNNSIIGV+T ITLN +SR+GG+VRVE+ KKKIEL IFSGDI
Sbjct: 660 FFIPEEVHILAGSSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGDI 719
Query: 699 HFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYD 758
HFPGE DKIS+HS ILIPP +KNSK+SK W Y+Q IT TKKKYFVLVRPV+ Y+
Sbjct: 720 HFPGETDKISRHSGILIPP---SRKNSKDSKNLKKWIYVQRITPTKKKYFVLVRPVVPYE 776
Query: 759 IADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 818
I D INL LFPQDL +E DN++L+V+N+ILYGNGK RGI DTSIQLVRTCLVLNWN+D
Sbjct: 777 ITDGINLATLFPQDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLVRTCLVLNWNQD 836
Query: 819 EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 878
+K SSIEEA SFVEV TNG+I+ FL+++LVK ISYI KRNDPSS SD N+
Sbjct: 837 KKGSSIEEARGSFVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSSE---KKEGSDHTNM 893
Query: 879 NPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNG 935
NPF+SIY K +Q+S +Q GT+R LL NKE + F+ILSSSNCF++GPF VKY
Sbjct: 894 NPFYSIYIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRIGPFKGVKYPKE 953
Query: 936 IKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETF 995
+ K++ IPI+ S GPLG A QIANFFSFY+LITHN+I + LQL+ K+TF
Sbjct: 954 L------IKKDPLIPIRNSFGPLGTALQIANFFSFYYLITHNQI-LVTNYLQLDNLKQTF 1006
Query: 996 QVIK--YYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVC 1053
Q K YYLMDEN RIY PD +NII NPF LNW F+H ++CE+T I LGQF+CENVC
Sbjct: 1007 QPFKFQYYLMDENGRIYNPDPCSNIIFNPFKLNWYFLHYHFCEETSTKIDLGQFVCENVC 1066
Query: 1054 IVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEK 1113
I TK G +LKSGQV+ VQ D V IR A PYLATPGAT+HGHYGE++YEGD LVTFIYEK
Sbjct: 1067 I--TKKGTHLKSGQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEK 1124
Query: 1114 SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQ 1173
SRSGDITQGLPKVEQVLEVRSIDSIS+NLEKRID+WNERIT ILG PW FLIGAELTIAQ
Sbjct: 1125 SRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQ 1184
Query: 1174 SRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQR 1233
SRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGL RA+R
Sbjct: 1185 SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAER 1244
Query: 1234 TGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENL 1293
TGRALEE+ICYR LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+
Sbjct: 1245 TGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 1304
Query: 1294 VLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRG 1330
VLGG+IPVGTGFK SS +D + + + G
Sbjct: 1305 VLGGMIPVGTGFKGFVHHSSQHKDIPLKTKKQNLFEG 1341
>RPC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1377
Score = 1954 bits (5061), Expect = 0.0
Identities = 1018/1355 (75%), Positives = 1137/1355 (83%), Gaps = 43/1355 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERA+LVFHNKVI G A+KR+ISRLIDHFGMAYTSHILDQVKTLGF+QATTTSISLGID
Sbjct: 5 MAERADLVFHNKVIDGAAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATTTSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN M+ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNG-MTERIW 243
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLA DIY+G RCI RNQDIGIGL+NRFI F+ QPI+IRTPF CR+TSWICRL
Sbjct: 244 IQTLIGRVLAYDIYMGPRCIAARNQDIGIGLVNRFITFRAQPIYIRTPFLCRSTSWICRL 303
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+P NGKI
Sbjct: 304 CYGRSPAHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPFNGKI 363
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNE+ +PTRTRHGHPAFLCY DLYVTIES+DI+HNV IP KSFLLVQNDQYV+SEQ+I
Sbjct: 364 QFNEDLVHPTRTRHGHPAFLCYTDLYVTIESHDILHNVNIPQKSFLLVQNDQYVESEQVI 423
Query: 421 AEIRAGTYTLNL--KEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
AEIRAGT T NL KEKVRKHI+SDSEGEMHWST++YH E+ Y NVH+LPKTSHLWILS
Sbjct: 424 AEIRAGTSTFNLKVKEKVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILS 483
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR--------------LCP 524
G +S V SL KDQDQM+ HSL +R S+ V+N +VR P
Sbjct: 484 GGLCRSSIVPFSLHKDQDQMNVHSLSVEQRYISDLSVTNVRVRHKLFSSDSSGKKGGRAP 543
Query: 525 D-----------HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DIS 571
D H +F++P I + S+LLAK+RRNRFIIP F+S +ER ELMP IS
Sbjct: 544 DYSGPDRIISNGHWNFIYPAILHENSDLLAKRRRNRFIIP--FQSDQEREKELMPRSGIS 601
Query: 572 VEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKY 631
+EIPI+GI+ +NSILAYFDDP+YR SSGI KY TIG+ SI +KEDLIEYR +EF+PKY
Sbjct: 602 IEIPINGILRRNSILAYFDDPRYRRSSSGITKYGTIGVDSIVKKEDLIEYRRAKEFRPKY 661
Query: 632 QIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIEL 691
Q+KVDRFFFIP+EVHIL SS +MVRNNSIIGVNT I LN +SRVGGLVRVE+ KK+IEL
Sbjct: 662 QMKVDRFFFIPEEVHILPASSPVMVRNNSIIGVNTRIALNTRSRVGGLVRVERKKKRIEL 721
Query: 692 KIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLV 751
KIFSGDIHFPGE DKIS+HS ILIPP KKN KESKK NW Y+Q IT TKKKYFVLV
Sbjct: 722 KIFSGDIHFPGETDKISRHSGILIPPG-TGKKNVKESKKWKNWIYVQRITPTKKKYFVLV 780
Query: 752 RPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCL 811
RPV+ Y+IAD INL LFPQD +E DN++L+V+N+ILYGNGK IRGI TS+QLVRTCL
Sbjct: 781 RPVVTYEIADGINLETLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTSLQLVRTCL 840
Query: 812 VLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYN 871
VLNW++D ++ SIEE ASFVEV NGLIR FL+IDLVKS I Y KRND +SSG I N
Sbjct: 841 VLNWDQD-RNGSIEEVHASFVEVRANGLIRDFLKIDLVKSPILYSGKRNDTTSSGFIPNN 899
Query: 872 ESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVK 931
SDR NINPF+ +K I QSL+Q GTIR LLNRNKE +SF+ILSSS+C ++G FN K
Sbjct: 900 GSDRTNINPFY--FKARI-QSLTQHQGTIRTLLNRNKECQSFLILSSSDCSRIGSFNGSK 956
Query: 932 YHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF 991
H KE I K + IPI+ SLGPLG P+IANF S Y+LITHN+I + K L L+
Sbjct: 957 SHKVTKESIT-IKEDPTIPIRNSLGPLGTVPKIANFDSSYYLITHNQI-LLNKYLSLDNL 1014
Query: 992 KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICEN 1051
K+TFQV+KYYLMDEN RIY PD +NII NPF LNW F+ +YCE+T II+ GQFICEN
Sbjct: 1015 KQTFQVLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLPHDYCEETSTIINPGQFICEN 1074
Query: 1052 VCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIY 1111
VCI +K GP++KSGQ++ V++D + IR A P+LATPGAT+HGH GE+LYEGD LVTFIY
Sbjct: 1075 VCI--SKYGPHIKSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIY 1132
Query: 1112 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTI 1171
EKSRSGDITQGLPKVEQVLE RSIDSISMNLEKR++ WNERIT ILGIPW FLIGAELTI
Sbjct: 1133 EKSRSGDITQGLPKVEQVLEARSIDSISMNLEKRVEGWNERITKILGIPWGFLIGAELTI 1192
Query: 1172 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1231
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITS+VLVSEDGMSNVFSPGELIGLLRA
Sbjct: 1193 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGELIGLLRA 1252
Query: 1232 QRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1291
+RTGRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE
Sbjct: 1253 ERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1312
Query: 1292 NLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
N+VLGG++PVGTGFK + RS RQ I LE K
Sbjct: 1313 NVVLGGMMPVGTGFKGLVRRS--RQHNNIPLEIKK 1345
>RPC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1376
Score = 1921 bits (4976), Expect = 0.0
Identities = 1001/1358 (73%), Positives = 1125/1358 (82%), Gaps = 53/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVI GTAIKR+ISRLIDHFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRN--RMMSER 238
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN RMMSER
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240
Query: 239 ILIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWIC 298
I IQTLIGRVLADDIYIGSRC+ RNQD+GIGL+NR I F TQ I IRTPFTCR+TSWIC
Sbjct: 241 IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC 300
Query: 299 RLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNG 358
RLCYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+P NG
Sbjct: 301 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 360
Query: 359 KIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQ 418
KIKFNE+ +PTRTRHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ
Sbjct: 361 KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 420
Query: 419 IIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
+IAEIR GTYT + KE+VRK+I+SDSEGEMHWST++ H EF YSNVH+LPKTSHLWILS
Sbjct: 421 VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 480
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQV------------------ 520
G S S + S+ KDQDQM+ L +++ S+ V+N+QV
Sbjct: 481 GGSCGSSLIRFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIY 540
Query: 521 -------RLCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--IS 571
L H + ++ I + S+LLAK+RRNRF+IP F+SI+E+ E +P IS
Sbjct: 541 DYSELNGNLGTSHYNLIYSAIFHENSDLLAKRRRNRFLIP--FQSIQEQEKEFIPQSGIS 598
Query: 572 VEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKY 631
VEIPI+GI +NSI A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++ K KY
Sbjct: 599 VEIPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKY 658
Query: 632 QIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIEL 691
++KVDRFFFIP+EVHIL ESS+IMV+N SIIGV+T +TLN +S+VGGL+RVEK KK+IEL
Sbjct: 659 EMKVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIEL 718
Query: 692 KIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLV 751
KIFSGDIHFP + DKIS+HS ILIPP KKNSKESKK NW Y+Q IT TKKK+FVLV
Sbjct: 719 KIFSGDIHFPDKTDKISRHSGILIPPGR-GKKNSKESKKFKNWIYVQRITPTKKKFFVLV 777
Query: 752 RPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCL 811
RPV Y+IADSINL LFPQDLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCL
Sbjct: 778 RPVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCL 837
Query: 812 VLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYN 871
VLNW +K+SS+EE A FVEVST GLI+ F+RI LVKSHISYIRKRN+ SGLIS +
Sbjct: 838 VLNW---DKNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISAD 894
Query: 872 ESDRININPFFSIYKEN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNN 929
++NPF+SI ++ +QQSL Q HGTIRM LNRNKE++S +ILSSSNCF+MGPFN+
Sbjct: 895 -----HMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNH 949
Query: 930 VKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLN 989
VK+HN I + I K+N I IK S GPLG A I+NF+SF L+T+N+IS I K QL+
Sbjct: 950 VKHHNVINQSI---KKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLI-KYFQLD 1005
Query: 990 KFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLG 1045
K FQ I YL+DEN I D Y+N++LNPF LNW F+H NYCE+T IISLG
Sbjct: 1006 NLKYIFQKINSYLIDENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLG 1065
Query: 1046 QFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDI 1105
QF CENVCI K P+LKSGQV+ VQ D IR A PYLATPGA +HGHY E+LYEGD
Sbjct: 1066 QFFCENVCI--AKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDT 1123
Query: 1106 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLI 1165
LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+NLEKRI WN+ IT ILGIPW FLI
Sbjct: 1124 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLI 1183
Query: 1166 GAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1225
GAELTI QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF PGEL
Sbjct: 1184 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGEL 1243
Query: 1226 IGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDW 1285
IGLLRA+RTGRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1244 IGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 1303
Query: 1286 LKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLE 1323
LKGLKEN+VLGG+IP GTGF K G +RQ T I LE
Sbjct: 1304 LKGLKENVVLGGVIPAGTGFNK-GLVHCSRQHTNIILE 1340
>RPC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1386
Score = 1884 bits (4880), Expect = 0.0
Identities = 975/1341 (72%), Positives = 1109/1341 (81%), Gaps = 48/1341 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
M E NLVFH KVI GTAIKR+ISRLIDHFGMA+TSHILDQVKTLGF+QAT TSISLGID
Sbjct: 1 MDEGVNLVFHKKVIDGTAIKRLISRLIDHFGMAHTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQD EQQSL LEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNF
Sbjct: 61 DLLTIPSKGWLVQDGEQQSLSLEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ R M ERI
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTLRGISVSPRR--MPERIF 238
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIYIGSRCI +RNQDIGIGL+NRFI F QPI IRTPFT R+ SWICRL
Sbjct: 239 IQTLIGRVLADDIYIGSRCIAIRNQDIGIGLVNRFITFGIQPISIRTPFTGRSPSWICRL 298
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 299 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 358
Query: 361 KFNENSA--YPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQ 418
KFN N A +P RTRHGHPA LC +DL VTIES DI+HN+ IPPKSFLLVQN+QYV+SEQ
Sbjct: 359 KFNFNEALVHPARTRHGHPALLCSMDLDVTIESEDILHNLTIPPKSFLLVQNNQYVESEQ 418
Query: 419 IIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
+IAEI AGT T + KE+VRKHI+SDSEGEMHWST++YH EF YSNVH+LPKTSHLWILS
Sbjct: 419 VIAEICAGTSTFHFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILS 478
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR----------------- 521
G S +S SL KDQDQM+ S +R S+ +N+Q+R
Sbjct: 479 GGSCRSRGAPFSLHKDQDQMNPRSTERERRYLSSLSANNDQIRYKFFSSSFSGKKKDDRE 538
Query: 522 ----------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--D 569
+C HC+ ++P+I + S+LLAK+RRNR +IP +S +ER EL+P
Sbjct: 539 SWFISEMNRIICTLHCNLIYPSILRENSDLLAKRRRNRLVIP--VQSSQEREKELIPHSG 596
Query: 570 ISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKP 629
IS+E+PI+GI K SILA+FDDP+YRT+SSGI +Y+T+G+HSI +KE L++YRGI EFKP
Sbjct: 597 ISIELPINGIFRKKSILAFFDDPRYRTKSSGITQYETMGMHSIVKKEGLVDYRGINEFKP 656
Query: 630 KYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKI 689
KYQ+ +DRFFFIP+EVHIL ESSSIMVRNNS+IGV+T I LN +SR GGLVRVE+ K+ I
Sbjct: 657 KYQMTIDRFFFIPEEVHILPESSSIMVRNNSLIGVDTRIALNTRSRAGGLVRVERKKRGI 716
Query: 690 ELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFV 749
L+IFSG IHFPGE DKIS S ILIPP K+NSKESKK N Y+Q IT TKKK+FV
Sbjct: 717 ALQIFSGTIHFPGETDKISWDSGILIPPG-TGKRNSKESKKWKNGIYVQRITPTKKKHFV 775
Query: 750 LVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRT 809
L RPV+ Y+IAD +NL +LFP DL +E DN++L+++N+I+YGNGK IR I DTSIQLVRT
Sbjct: 776 LFRPVVTYEIADGLNLARLFPPDLCQEKDNMQLQIVNYIVYGNGKPIREISDTSIQLVRT 835
Query: 810 CLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLIS 869
+LNW++D+KS+S E A ASFVEV GLIR FLRIDLVKS I RKRNDPS SGLIS
Sbjct: 836 WFILNWDQDKKSASAEAAHASFVEVRAKGLIRDFLRIDLVKSPILDPRKRNDPSGSGLIS 895
Query: 870 YNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNN 929
N SD NINPF+S K ++QS Q HGTIR LLN+NKE S +ILS+SN F+MGPFN+
Sbjct: 896 DNVSDHTNINPFYS--KPKMKQSPRQNHGTIRTLLNQNKECPSLMILSASNWFRMGPFND 953
Query: 930 VKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLN 989
VK N IKE I K++ I I+ S+GPLG A Q+ NF SFY+ ITHN++ + K LQ+
Sbjct: 954 VKSQNVIKESI---KKDAIIQIRNSIGPLGTALQVVNFDSFYYFITHNQV-LLTKYLQVE 1009
Query: 990 KFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFI-HPNY---CEKTFPIISLG 1045
K+TFQV++YYLMDE+ RIY PD +NI+LN F+L+W F+ H NY CE+ I+SLG
Sbjct: 1010 NLKQTFQVLQYYLMDESGRIYNPDPRSNIVLNSFNLSWYFLPHNNYENSCEEISTIVSLG 1069
Query: 1046 QFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDI 1105
QFICEN CI KNGP L+SGQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LY+GD
Sbjct: 1070 QFICENGCI--AKNGPYLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDT 1127
Query: 1106 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLI 1165
+VTF+YEKSRSGDITQGLPKVEQVLEVRS+DSIS+NLEKR++ WNE IT ILG PW FLI
Sbjct: 1128 VVTFLYEKSRSGDITQGLPKVEQVLEVRSVDSISVNLEKRVENWNEHITRILGFPWGFLI 1187
Query: 1166 GAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1225
GAELTI QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF P EL
Sbjct: 1188 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPREL 1247
Query: 1226 IGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDW 1285
IGLLRA+RTGRALEESICY+ LLGIT+TSLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1248 IGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDW 1307
Query: 1286 LKGLKENLVLGGIIPVGTGFK 1306
LKGLKEN+V+GG+IPVGTGFK
Sbjct: 1308 LKGLKENVVIGGMIPVGTGFK 1328
>RPC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1384
Score = 1880 bits (4871), Expect = 0.0
Identities = 986/1365 (72%), Positives = 1106/1365 (80%), Gaps = 46/1365 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVI GTAIKR+ISRLIDHFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRN--RMMSER 238
SCYGARKGVVDTAVR SDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN RMMSER
Sbjct: 185 SCYGARKGVVDTAVRQSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKSRMMSER 244
Query: 239 ILIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWIC 298
I IQTLIGRVLADDIYIGSRC+ RNQD+GIGL+NRFI F TQPI IRTPFTCR+TSWIC
Sbjct: 245 IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRFITFGTQPISIRTPFTCRSTSWIC 304
Query: 299 RLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNG 358
RLCYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+P NG
Sbjct: 305 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 364
Query: 359 KIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQ 418
KIKFNE+ + TRTRHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ
Sbjct: 365 KIKFNEDLVHSTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 424
Query: 419 IIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
+IAEIR GTYT KE+VRK+I+SDSEG MHWST++ H EF YSNVH+LPKTSHLWILS
Sbjct: 425 VIAEIREGTYTFQFKERVRKYIYSDSEGGMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 484
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------LCPD 525
G S S + S+ KDQDQM+ L +++ S+ V+N+QV L P+
Sbjct: 485 GGSCGSSLILFSIHKDQDQMNIPFLSVERKSISSLSVNNDQVSQKFFSSDFSDKKILIPN 544
Query: 526 -----------HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISV 572
H +F++ I + S+LLAK+RRNRF+IPF +E+ E +P ISV
Sbjct: 545 YSELNGIVGTSHYNFIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEQEKEFIPHSGISV 604
Query: 573 EIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQ 632
EIPI+GI +NSI A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++FK KY+
Sbjct: 605 EIPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYE 664
Query: 633 IKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELK 692
+KVDRFFFIP+EVHIL ESS+IMV N SIIGV+T ITLN +S+VGGL+RVE+ KK+IELK
Sbjct: 665 MKVDRFFFIPEEVHILPESSAIMVENYSIIGVDTRITLNIRSQVGGLIRVERKKKRIELK 724
Query: 693 IFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVR 752
IFSGDIHFP + DKIS+HS ILIPP K NSKESK NW Y+Q IT TKKK+FVLVR
Sbjct: 725 IFSGDIHFPDKTDKISRHSGILIPPGR-GKTNSKESKIVKNWIYVQRITPTKKKFFVLVR 783
Query: 753 PVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLV 812
PV Y+IADSINL LFP+DLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCLV
Sbjct: 784 PVATYEIADSINLATLFPKDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLV 843
Query: 813 LNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNE 872
LNW++D K+SS+EE A FVEV+T GLIR F+RI LVKSHISYIRKRN+PSS E
Sbjct: 844 LNWDQDNKNSSLEEVRAFFVEVNTKGLIRDFIRIGLVKSHISYIRKRNNPSS----EKKE 899
Query: 873 SDRININPFFSIYKEN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
++NPF+SI + + QSL Q HGTIRM LNRN+ N +ILSSSNCF++GPFN+V
Sbjct: 900 GSDHSMNPFYSISPKAGILHQSLRQNHGTIRMFLNRNR-NPILLILSSSNCFRIGPFNHV 958
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
KYHN I + I + N+ IK P G A QI F F N+IS I K L L
Sbjct: 959 KYHNVINQSIKKKTSNY---IKNCRAPYGTAIQILIFIHFAFTKLINQISCI-KYLHLQT 1014
Query: 991 FKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQ 1046
F VI YL+DEN RI+ D Y+N++LNPF LNW F+H NYCE+T IISLGQ
Sbjct: 1015 SNVFFPVIHSYLIDENGRIFNLDPYSNLVLNPFKLNWYFLHQNYNNNYCEETSTIISLGQ 1074
Query: 1047 FICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDIL 1106
F CENVCI K P LKSGQV+ VQ D V IR A PYLATPGA +HGHY E+LYEGD L
Sbjct: 1075 FFCENVCI--AKKEPYLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTL 1132
Query: 1107 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIG 1166
VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+NLEKRI WN IT ILGIPW FLIG
Sbjct: 1133 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCITRILGIPWGFLIG 1192
Query: 1167 AELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1226
AELTI QSRISLVNKI++VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELI
Sbjct: 1193 AELTIVQSRISLVNKIKQVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELI 1252
Query: 1227 GLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1286
GLLRA+RTGRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1253 GLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 1312
Query: 1287 KGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRGR 1331
KGLKEN+VLGG+IP G G ++IG S+A +IRGR
Sbjct: 1313 KGLKENVVLGGVIPPGPGSQRIGALSTATYQHSFGKNKNYLIRGR 1357
>RPC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1373
Score = 1845 bits (4778), Expect = 0.0
Identities = 971/1355 (71%), Positives = 1095/1355 (80%), Gaps = 48/1355 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERA+LVFHNK I GTA+KR+ISRLIDHFGMAYTSHILDQVKTLGFRQAT TSISLGID
Sbjct: 5 MAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFRQATLTSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLT PSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTTPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPV+IMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY I
Sbjct: 125 MTDPFNPVYIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYTI 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRM-MSERI 239
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN + ++ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGVGVTERI 244
Query: 240 LIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICR 299
IQTLIGRVLA+D+Y+G RCI RNQDIGIGL+NRFI + QPI+IR+PFTCR+TSWIC+
Sbjct: 245 FIQTLIGRVLANDVYMGLRCIATRNQDIGIGLVNRFITSRAQPIYIRSPFTCRSTSWICQ 304
Query: 300 LCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGK 359
LCYGRS HGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGG AE+VR+PSNGK
Sbjct: 305 LCYGRSTTHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGIAEHVRAPSNGK 364
Query: 360 IKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQI 419
IKFNE+ +PTRTRHGHPAFLC+IDL+VTIES DI+H V IPPKSFLLVQNDQYV+SEQ+
Sbjct: 365 IKFNEDLVHPTRTRHGHPAFLCHIDLHVTIESQDIIHKVNIPPKSFLLVQNDQYVESEQV 424
Query: 420 IAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSG 479
IAEIRAGT TL KE+V+KHI+SDSEGEMHWST++YH E+ + NVH+LPKTSHLW+LSG
Sbjct: 425 IAEIRAGTSTL--KERVQKHIYSDSEGEMHWSTDVYHTPEYTHGNVHLLPKTSHLWVLSG 482
Query: 480 NSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------ 521
+ +S V L KDQDQM+ SL +R S+ ++N++VR
Sbjct: 483 SPCRSSIVPFPLHKDQDQMNVQSLYVEERYISDLSMNNDRVRHKLFGWDQKRGRVSYYSG 542
Query: 522 ----LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD-ISVEIPI 576
+ + ++P I + S+LLAK+RRNRFIIPF + +E+ EL P I ++IPI
Sbjct: 543 PDRIISNRNWDSIYPLILHENSDLLAKRRRNRFIIPFQYD--QEQEKELRPPGIVIKIPI 600
Query: 577 DGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI--K 634
GI+ +NSILAYFDDP+YR SSGIAKY TI + SI +KEDLIEYR REF PKYQI K
Sbjct: 601 KGILRRNSILAYFDDPRYRRSSSGIAKYGTIEVDSIIKKEDLIEYRKTREFGPKYQIQIK 660
Query: 635 VDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIF 694
V+RFFFIP+EVHIL SSSIMVRNNSIIGV+T ITLN +S+VGGLVRVEK KK+IELKI
Sbjct: 661 VNRFFFIPEEVHILPRSSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVEKKKKRIELKIS 720
Query: 695 SGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPV 754
SGDIHFPGE D I+++S ILIPP VK SK NW Y+Q IT KKKYFV VRPV
Sbjct: 721 SGDIHFPGETDNIARYSGILIPPGRVKNTESKFK----NWIYVQRITPIKKKYFVSVRPV 776
Query: 755 ILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLN 814
+ Y+IAD INL FPQDL +E +NL+L+V+N+ILYG+GK IRGI TSIQLVRTCLVLN
Sbjct: 777 VTYEIADGINLATFFPQDLLQEKNNLQLRVVNYILYGDGKPIRGIFHTSIQLVRTCLVLN 836
Query: 815 WNEDEKSS-SIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNES 873
W++D S EEA S EV N LIR F+RIDLVKS IS K ND + SGLI N S
Sbjct: 837 WDQDRAGSIEEEEAYTSLAEVRVNDLIRNFIRIDLVKSPISSTGKENDMAGSGLIPNNGS 896
Query: 874 DRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENR--SFIILSSSNCFQMGPFNNVK 931
DRIN NPFFS K QSLSQ GTIR LLNRNKE + S ++LSSSNC ++GP N K
Sbjct: 897 DRINTNPFFSKAKT---QSLSQHQGTIRTLLNRNKEGQGESLMVLSSSNCSRIGPLNGSK 953
Query: 932 YHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF 991
YHN KE I + + I I+ SLGPLG P I NF S YH ITHN+I K L +
Sbjct: 954 YHNVTKESIQE---DPMISIRNSLGPLGTVPNILNFSSSYHSITHNEIL-FNKYLLPDNS 1009
Query: 992 KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICEN 1051
+ETF V K Y MDEN RIY D +NIIL PF+LNW F+H +Y E T IISLGQF+CEN
Sbjct: 1010 RETFLVPKSYFMDENRRIYNLDPCSNIILTPFNLNWCFLHHDYWEDTSTIISLGQFLCEN 1069
Query: 1052 VCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIY 1111
+CI +K+GP +KSGQ+I V +D + IRLA +LAT GAT+HGHYGE+LYEGD LVTFIY
Sbjct: 1070 ICI--SKDGPCVKSGQIIIVHVDSLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIY 1127
Query: 1112 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTI 1171
EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR++ WNERITG LGIPW F I A+LTI
Sbjct: 1128 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITGFLGIPWEFFISAQLTI 1187
Query: 1172 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1231
QSRISLVNKIQ+VYRSQGV IHNRHIE IVRQITSKVLVSEDGMSNVFSP ELIGLLRA
Sbjct: 1188 VQSRISLVNKIQKVYRSQGVQIHNRHIETIVRQITSKVLVSEDGMSNVFSPRELIGLLRA 1247
Query: 1232 QRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1291
+R GRALE+ ICYR +LLGIT+ SLNTQSFISEASFQET RVLAKAALR RIDWLKGLKE
Sbjct: 1248 ERIGRALEDDICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRSRIDWLKGLKE 1307
Query: 1292 NLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
N+VLGG+IPVGTGFK G +R+ I+LE K
Sbjct: 1308 NVVLGGMIPVGTGFK--GFVHHSREHNNISLEIKK 1340
>RPC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit) (Fragment)
Length = 1163
Score = 1734 bits (4492), Expect = 0.0
Identities = 890/1148 (77%), Positives = 981/1148 (84%), Gaps = 46/1148 (4%)
Query: 205 RLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERILIQTLIGRVLADDIYIGSRCIVVRN 264
RLVEVVQHIVVRRTDCGT+RGISVNTRN MM E ILIQTLIGRV+A++IYIGSRCIVVRN
Sbjct: 1 RLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPEIILIQTLIGRVVAENIYIGSRCIVVRN 60
Query: 265 QDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLVELGEAVGIIAGQ 324
QDIGIGLINRFI FQTQPIFIRTPFTCRNTSWICRLCYGRSPIHG+LVELGEAVGIIAGQ
Sbjct: 61 QDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLVELGEAVGIIAGQ 120
Query: 325 SIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRTRHGHPAFLCYID 384
SIGEPGTQLTLRTFHTGGVFTGGTAEYVR+PSNGKIK NE+ +PTRTRHG+PAF+C ID
Sbjct: 121 SIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKLNEDLVHPTRTRHGYPAFICNID 180
Query: 385 LYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNLKEKVRKHIFSDS 444
LYVTIES+DI+HNVIIPPKSFLLVQNDQYVKSEQ+IAEIRAGTYT NLKE+VRKHI+SDS
Sbjct: 181 LYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNLKERVRKHIYSDS 240
Query: 445 EGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLLKDQDQMSTHSLP 504
EGEMHWST++YH SEF YSNVHILPKTSHLWILSG S +S+T+ L KDQDQ++ SL
Sbjct: 241 EGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGKSCRSNTIHFLLRKDQDQITMDSLS 300
Query: 505 TAKRNTSNFLVSNNQVR-------------------------LCPDHCHFMHPTISPDTS 539
K N SN L N+QV+ +C DH +P I DT
Sbjct: 301 NGKTNISNLLERNDQVKHKLFRFNTFGTKEKGISDYSIFNEIICTDH---SYPAIFHDTF 357
Query: 540 NLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSILAYFDDPQYRTQ 597
LAK+RRNRF+IPF F+SI+ER NE M +S+EIPI+GI H+NSI AYFDDPQYR
Sbjct: 358 YFLAKRRRNRFLIPFPFQSIQERKNERMSPSGVSIEIPINGIFHRNSIFAYFDDPQYRRH 417
Query: 598 SSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVR 657
SSGI KY+TIGIHSIFQKED IEYRGI+E KPK QI+VDRFFFIP+EVHIL +SSS+MVR
Sbjct: 418 SSGITKYRTIGIHSIFQKEDFIEYRGIKELKPKSQIQVDRFFFIPEEVHILPKSSSLMVR 477
Query: 658 NNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPP 717
NNS++G+ TPIT N +SRVGGLVR++K KKKIELKIFSG+IHFPGE+DKIS+HSAILIPP
Sbjct: 478 NNSLVGIGTPITFNIRSRVGGLVRLDKKKKKIELKIFSGNIHFPGEMDKISRHSAILIPP 537
Query: 718 EMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEW 777
VKKK +SKK NW Y+QWI TTKKKYFVLVRPVILY+I DS N VKLFPQDLF+E
Sbjct: 538 GTVKKKKCNKSKKIKNWIYVQWIATTKKKYFVLVRPVILYEIPDSNNFVKLFPQDLFQEK 597
Query: 778 DNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTN 837
DNLELKV+N+ILYGNGKSIRGI DT IQLVRTCLV NW++ + SSSIEEA ASF+EV TN
Sbjct: 598 DNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVFNWDDGKNSSSIEEAPASFIEVRTN 657
Query: 838 GLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY-KENIQQSLSQK 896
GLI YFLRIDLVKS+ SYIRKRN+PS GLI N+SDR INPFFSI+ K IQQSLSQ
Sbjct: 658 GLIEYFLRIDLVKSNTSYIRKRNEPSGFGLIGDNKSDR--INPFFSIHSKGKIQQSLSQN 715
Query: 897 HGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEE-INQFKRNHKIPIKISL 955
HGTIRMLLNRNKE RS+IILSSSNCFQM PFNN K HNGIK++ I N
Sbjct: 716 HGTIRMLLNRNKECRSWIILSSSNCFQMRPFNNEKSHNGIKKDPIISINNN--------- 766
Query: 956 GPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLY 1015
GPLG+A Q+ANF+S YHLITHN+IS I KNLQL+K E FQVIKYYLMDEN++I KPDLY
Sbjct: 767 GPLGIALQVANFYSLYHLITHNQISII-KNLQLDKLTEIFQVIKYYLMDENDKICKPDLY 825
Query: 1016 NNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPN--LKSGQVITVQM 1073
+NIILNPFHLNW F+H YCEKTF ISLGQFICEN+CI Q KN P+ LKSGQVI VQM
Sbjct: 826 SNIILNPFHLNWFFLHHFYCEKTFTRISLGQFICENICIAQMKNRPHLKLKSGQVIIVQM 885
Query: 1074 DFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVR 1133
D V IR ANPYLATPGATIHGHYGE+L +GDILVTFIYEKSRSGDITQGLPKVEQ+LE+R
Sbjct: 886 DSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDITQGLPKVEQILEIR 945
Query: 1134 SIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHI 1193
SIDSISMNLEKRIDAWNE IT I+GIPW FLIGAELTIAQSRISLVNKIQ+VYRSQGVHI
Sbjct: 946 SIDSISMNLEKRIDAWNECITKIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHI 1005
Query: 1194 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITK 1253
HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRA+RTGRALEE+ICYR LLLG+TK
Sbjct: 1006 HNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERTGRALEEAICYRALLLGVTK 1065
Query: 1254 TSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSS 1313
TSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+VLGG+IPVGTGFK+I RS
Sbjct: 1066 TSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRIMHRSR 1125
Query: 1314 ARQDTKIT 1321
+RQ KIT
Sbjct: 1126 SRQHNKIT 1133
>RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1386
Score = 1255 bits (3248), Expect = 0.0
Identities = 694/1356 (51%), Positives = 929/1356 (68%), Gaps = 80/1356 (5%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAE NL+F+NKV+ TAIK++ISRLI HFG+ YT+HILDQ+KTLGF+QAT +ISLGID
Sbjct: 1 MAEPVNLIFYNKVMDRTAIKQLISRLIAHFGITYTTHILDQLKTLGFQQATFGAISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLT PSK WL++DAEQ + EKHH+YG++HAVEKLRQ IE WYATSEYL+QEMNPNF
Sbjct: 61 DLLTAPSKSWLIEDAEQYGNLSEKHHNYGSLHAVEKLRQLIETWYATSEYLKQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
+TDP NPVH+MSFSGARG+ SQVHQLVGMRGLMSDPQGQ+IDLPIQSN REGLSLTEYII
Sbjct: 121 ITDPLNPVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR+ DCGT+ GI+VN N +
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTLYGINVN--NLSEKKNNF 238
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
Q LIGRV+A++IYI RCI RNQDIG L NR I +T+ IF+R+P TC++ +WIC+L
Sbjct: 239 QQKLIGRVIAENIYIDHRCIAPRNQDIGALLANRLITLKTKQIFLRSPLTCKSMNWICQL 298
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYG S HGNL+E+GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE+VR+P NG I
Sbjct: 299 CYGWSLSHGNLIEMGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFNGII 358
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNEN YPTRTRHGHPA++C+ +L++ I+S + +HN+ IPPKS LLVQN+QYV+S+Q+I
Sbjct: 359 EFNENFVYPTRTRHGHPAWMCHTNLFLVIKSKNKVHNLTIPPKSLLLVQNNQYVESKQVI 418
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRA T KEKV+K+I+S+ EGEMHWST + H SE+ +SN+H++ KT H+WILSGN
Sbjct: 419 AEIRAKTSP--FKEKVQKYIYSNLEGEMHWSTKVRHASEYIHSNIHLILKTCHIWILSGN 476
Query: 481 SH-KSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCH-------FMHP 532
H K++ +S+ K+QD++ T ++N +F+ + Q+ L H + F+
Sbjct: 477 FHKKNNDLSVLFYKNQDKIDFPISLTKEKNEFSFVKNKTQLNLFLFHFYLYKKNKIFIKS 536
Query: 533 TISPDTSNLLAKKRRNRFIIP---------FLFRSIRERNNELMPDISVEIPIDGIIHKN 583
++ + N + + FI+ F F +N L + ++I +G++ N
Sbjct: 537 QLTNNILNKINNSKNYNFILQEYNIKKKKNFYFL----KNKNLTCPLFLKIKKNGVLKNN 592
Query: 584 SILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQ-IKVDRFFFIP 642
I A DDP Y+ ++SGI KY I + I Q + E + F+P+Y IK FFFIP
Sbjct: 593 EIFAILDDPSYKVKNSGILKYGNIKVDLINQNTN-FEDPQTKLFRPRYSIIKEGNFFFIP 651
Query: 643 QEVHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKKIELKIFSGDIHF 700
+EV++L++S SS+ ++NN I T IT N +S GLV+++ K ELKI G I++
Sbjct: 652 EEVYVLTQSLSSVFIKNNKFIQAGTLITSNIRSNTNGLVKIQKKGNNNYELKILPGTIYY 711
Query: 701 PGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIA 760
P E KIS+ +ILIPP K N E K NW Y+QWI +K+K FVL+RP + Y I+
Sbjct: 712 PNETYKISKQISILIPPGK-KLFNEFECK---NWTYLQWIMPSKEKPFVLIRPAVEYKIS 767
Query: 761 DSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEK 820
+N LF DL K+ +E+K +N++LY + + I+ I + +IQL++TCL+++W +K
Sbjct: 768 KKLNKSTLF--DLLKKNKKVEIKTINYLLYEDDEQIQIINEKNIQLIQTCLLVHW---KK 822
Query: 821 SSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININP 880
+EA SF+++ T + FL+I L++ + + +K+ S ++ N D
Sbjct: 823 KYFFKEANVSFLKIKTKNNFKTFLQISLIE-YSNLEKKKEKTISKNVLKKNYYDH----- 876
Query: 881 FFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEI 940
FFSI K ++ ++K G IR++ N+N +SFIILSSS+ + F + + IK
Sbjct: 877 FFSISKNELK---NKKQGVIRIISNQNNGMQSFIILSSSDLVKTFKFKKLTKNISIKTNT 933
Query: 941 N-------QFKRNHKIPIK------------------ISLGPLGVAPQI-ANFFSFYHLI 974
N +F +N KI K LG LG I N FS ++LI
Sbjct: 934 NTSTAKFFEFNKNFKILNKKKKLNLTKKNFSIGLLLFKKLGFLGNLHNIVTNSFSSFYLI 993
Query: 975 THNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNY 1034
+ K+ S K ++ + KF+ T Q K+YL+DE+++I K L +I N F NW F +
Sbjct: 994 NYTKLISNKYSI-ITKFQHTCQNPKWYLIDESKKINKLILGKHINYNLF--NWCFPLFSL 1050
Query: 1035 CEK--TFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 1092
+K F I LGQ + EN I + K + SGQ+I++ +++ IRLA PYLAT GATI
Sbjct: 1051 LKKKIDFQTIKLGQLLFENFVISKYKT--SYPSGQIISININYFIIRLAKPYLATGGATI 1108
Query: 1093 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1152
H +YGE + EGD L+T IYE+ +SGDI QGLPKVEQ+LE R I+S+S+NLE + WN
Sbjct: 1109 HNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLENGFEDWNND 1168
Query: 1153 ITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVS 1212
+ +G W F + ++++ Q +I+LV++IQ+VY+SQGV I N+HIEIIVRQ+TSKV+
Sbjct: 1169 MIKFIGNLWGFFLSTKISMEQGQINLVDQIQKVYQSQGVQISNKHIEIIVRQMTSKVITL 1228
Query: 1213 EDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETAR 1272
EDGM+NVF PGELI R Q+ RALEE++ Y+ +LLGITK SLNTQSFISEASFQET R
Sbjct: 1229 EDGMTNVFLPGELIEFSRTQKMNRALEEAVPYKPILLGITKASLNTQSFISEASFQETTR 1288
Query: 1273 VLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKI 1308
VLAKAAL+GRIDWLKGLKEN++LGG++P GTG +++
Sbjct: 1289 VLAKAALKGRIDWLKGLKENVILGGLVPAGTGSQEV 1324
>RPC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1445
Score = 1214 bits (3141), Expect = 0.0
Identities = 691/1405 (49%), Positives = 916/1405 (65%), Gaps = 121/1405 (8%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAE A L+F+NKVI GTAIK+ I RL+ HFG+ YT+HILDQ+KTLGF+QAT + SLGID
Sbjct: 1 MAESAKLLFYNKVIDGTAIKQFIGRLVAHFGITYTAHILDQLKTLGFQQATYAATSLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLT PSKGWL+QDAE S LEKHH YGNVHAVEKLRQ IE WYATSEYL+QEMNPNF
Sbjct: 61 DLLTAPSKGWLIQDAEHHSYTLEKHHRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP NPVH+MSFSGARG+ASQVHQLVGMRGL+SDPQGQ+IDLPI+SN REGLSLTEYII
Sbjct: 121 MTDPLNPVHMMSFSGARGSASQVHQLVGMRGLVSDPQGQIIDLPIKSNFREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVN-TRNRMMSERI 239
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR+TDC T RGIS+N T ++ + +I
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKTDCNTFRGISLNSTEDKKKNLQI 240
Query: 240 LIQT-LIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWIC 298
Q L+GRVLAD++YI +RC+ +RNQDI LI + I +T I IR+P TC++ WIC
Sbjct: 241 FTQQKLVGRVLADNLYINARCLAIRNQDINTNLIEKLITLKTPLISIRSPLTCKSMLWIC 300
Query: 299 RLCYGRSPIH-GNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSN 357
+LCYG S H G+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE+VR+P N
Sbjct: 301 QLCYGWSLTHYGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFN 360
Query: 358 GKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSE 417
G I+F+ + YPTRTRHGHPA++C DL VTI+S + +HN+IIP +S LL+QN+QYV+S+
Sbjct: 361 GTIEFDTDLVYPTRTRHGHPAWVCRTDLAVTIKSQNKIHNLIIPSQSLLLIQNNQYVESK 420
Query: 418 QIIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWIL 477
Q+IAE+ A KEKV+K+I+ + EGEMHWS + H S++ +SNVH++ T HLWIL
Sbjct: 421 QLIAEVHAKVSPF--KEKVQKYIYCNIEGEMHWSKRVRHASKYLHSNVHLIFNTGHLWIL 478
Query: 478 SGNSHKSDTVSLSLLKDQDQMSTHSL---------------------PTAKRNTSNFLVS 516
SG+SH+ T S+ K+QDQ++T P ++ S
Sbjct: 479 SGSSHEDKTSSM-FFKNQDQINTKFFISPRKILFMKKTNQVNSKNLDPYLEKEMETLNYS 537
Query: 517 NNQVRLCPDHCHFMHPTI---SPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVE 573
N + + +F++P+I + + +K+ F++ L E+ ++ +
Sbjct: 538 NLYLGILNKSRNFVYPSIILHDYEVKRIYDEKKGENFLL--LEERHGEKKTQIFRRFVLN 595
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRG--IREFKPKY 631
IP GI+ I A +DP Y QS GI KY TI ++ I K + + R I +P+Y
Sbjct: 596 IPKSGILENKDIFAISNDPGYGIQSPGIIKYGTIKVNPIKGKGETFKNRETKILRLRPRY 655
Query: 632 Q-IKVDRFFFIPQEVHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKK 688
Q I+ FF IP+EVHIL ES I+VRN+S+I NT IT + +S+VGGLVR+ K
Sbjct: 656 QVIEPGNFFPIPEEVHILYESFPPILVRNDSLIKKNTQITSDIRSQVGGLVRIRRKMNDS 715
Query: 689 IELKIFSGDIHFPGEIDKISQHSAILIPP-EMVKKKNSKESKKKTNWRYIQWITTTKKKY 747
E+K+ G ++ P E IS+ + IL+PP E + K E NW Y++WIT K+K
Sbjct: 716 YEVKVLPGRVYHPEERRNISKQNDILVPPGEEISNKFQSE-----NWLYLEWITPPKEKP 770
Query: 748 FVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLV 807
F+ +RP I + + + +L + F + K+ + L++K + ++LY +G+ + T IQL+
Sbjct: 771 FIFIRPAIEFIVPEETDLAETFTLNSQKKQEILKVKKIRYLLYEDGEEVEVTNKTGIQLI 830
Query: 808 RTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGL 867
+T LVL+W ED SSI++ AS E+ TNGL + FL+I L++ I I K+ + +
Sbjct: 831 QTGLVLDWKED---SSIKKVYASLTEIETNGLSKKFLQISLIEHPIFEIEKKKNNVN--- 884
Query: 868 ISYNESDRININPFFSIYKENIQQSLSQKH-GTIRMLLNRNKENRSFIILSSSNCFQM-- 924
+ Y ++ IN +S + N + L + G IR+ N N+E++S ILS + Q+
Sbjct: 885 LKYLFTNEIN----YSSHSFNYENGLFNGYRGIIRISSNENQEDKSLPILSPFDFVQIFL 940
Query: 925 ----------------------------------------------GPFNNVKY--HNGI 936
G F N ++ HN I
Sbjct: 941 SKNSEEYTPEMKDEGNFNLDTNSIFYAKSFVKKFNQNSITSSQNSSGTFINKEFYNHNNI 1000
Query: 937 KEEINQFK--RNHKIPIKIS---------LGPLGVAPQIANFFSFYHLITHNKISSIKKN 985
+E N K RN + I+ + LG LG + + + F F + I +
Sbjct: 1001 NQEFNSRKIIRNFFLSIERNFMEILLLRKLGLLGNSHSLPSPFQFSCWANTHNQPIINRY 1060
Query: 986 LQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHL-NWDF-IHPNYCEKTFPIIS 1043
L ++ FQV K+Y DEN++ +K DL N I +HL W F I +Y E ++
Sbjct: 1061 SILENLRDVFQVPKWYFFDENKKTHKLDLSKNSI---YHLLTWSFSIALSYEEGAIHLVG 1117
Query: 1044 LGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEG 1103
LGQFICEN+ I +K +SGQ+I + +F+ +RLA P LAT GATIH HYG+++ +G
Sbjct: 1118 LGQFICENISI-SSKYQTISESGQIIAIHPEFLVVRLAKPSLATGGATIHSHYGQIIKKG 1176
Query: 1104 DILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRF 1163
D+L+T +YE+ +SGDI QGLPKVEQ+LE R I+S S+NLE + WN +T LG W F
Sbjct: 1177 DVLITLVYERLKSGDIIQGLPKVEQLLEARPINSTSINLENGFENWNRDMTKSLGSLWGF 1236
Query: 1164 LIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPG 1223
L+ A+ T+ QS+I+LV++IQ VY+SQGV+I ++HIEI+VRQ+TSKVL EDGM+N F PG
Sbjct: 1237 LLSAKTTMNQSQINLVDQIQEVYQSQGVYISDKHIEIVVRQMTSKVLTLEDGMANGFLPG 1296
Query: 1224 ELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1283
ELI RAQR R LEES+ Y+ +LLGITK SLNTQSFISEASFQET RVLAKAALRGRI
Sbjct: 1297 ELIESSRAQRMNRVLEESVLYKPILLGITKASLNTQSFISEASFQETTRVLAKAALRGRI 1356
Query: 1284 DWLKGLKENLVLGGIIPVGTGFKKI 1308
DWLKGLKEN++ GG+I GTG +++
Sbjct: 1357 DWLKGLKENVIFGGVISAGTGCQEV 1381
>RPC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1330
Score = 1208 bits (3126), Expect = 0.0
Identities = 664/1329 (49%), Positives = 888/1329 (65%), Gaps = 74/1329 (5%)
Query: 7 LVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGIDDLLTIP 66
++F+NKV+ TAIK++ISRLI HFG+ YT++ILDQ+KT+GF+QAT +ISLGIDDLLT P
Sbjct: 1 MLFYNKVMDRTAIKQLISRLITHFGITYTTYILDQLKTVGFKQATQAAISLGIDDLLTAP 60
Query: 67 SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFSMTDPFN 126
SK WL+QDAEQQ I EKH+ YGNVHAVEKLRQ IE WYATSEYL+QEMNPNF MTDP N
Sbjct: 61 SKSWLIQDAEQQGYISEKHYRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFRMTDPLN 120
Query: 127 PVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGAR 186
PVH+MSFSGARG+ SQVHQLVGMRGLMSDPQGQ+IDLPIQSN REGLSLTEYIISCYGAR
Sbjct: 121 PVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTEYIISCYGAR 180
Query: 187 KGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERILIQTLIG 246
KGVVDTAVRTSDAGYLTRRLVEVVQHIVVR+ DCGT I V + LIG
Sbjct: 181 KGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTSENIFVTPLQNNYKKN---NKLIG 237
Query: 247 RVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSP 306
R+LAD+IYI RCI +RNQDI L+ INFQ + IFIR+P C++ WIC+LCYG S
Sbjct: 238 RILADNIYINGRCIAIRNQDITTNLVISLINFQRKGIFIRSPLICKSMLWICQLCYGWSL 297
Query: 307 IHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENS 366
HGNL+ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE++R+P NG I+F+ NS
Sbjct: 298 THGNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRTPFNGIIQFDTNS 357
Query: 367 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 426
YPTRTRHGHPA++C +L V I+S +HN++IP +S LLVQ++QYV+S+Q+IAE+RA
Sbjct: 358 VYPTRTRHGHPAWICNNNLSVVIKSKKKLHNLVIPTQSLLLVQSNQYVESKQVIAEVRAK 417
Query: 427 TYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 486
T KEKV+K+I+S+ GEMHWS+ + H SE+ +SNVH+L KT H+WIL+GN K +
Sbjct: 418 TSP--FKEKVQKYIYSNLSGEMHWSSKVQHSSEYIHSNVHLLRKTGHIWILAGNFDKDNK 475
Query: 487 VSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKR 546
S ++QD++ + LP AK+ + F + HF++ + S+++
Sbjct: 476 FSFIFYQNQDKLD-NKLPIAKQTLNYFQLKE----------HFLNNFWNSIYSSIILYNY 524
Query: 547 RNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKT 606
R FL + + +L+ +++P +GI+ +N I A F+DP+YR ++SGI KY
Sbjct: 525 R------FLEKKNNKYEKKLLFQFMLKLPKNGILKQNDIFAIFNDPKYRIKNSGIIKYGN 578
Query: 607 IGIHSIFQKEDLIEYRGIREFKPKYQI-KVDRFFFIPQEVHILSES--SSIMVRNNSIIG 663
I + I +K D+ E + + +P+Y+I K FF +P+EV+IL +S SSI+V+NNS I
Sbjct: 579 IKVDLINKKNDIFEDQKTKTVRPRYKILKEGNFFLLPEEVYILDQSSFSSILVKNNSFIK 638
Query: 664 VNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKK 723
T IT N S++ G V+++K ++KI G I++P E K + + ILIPP +
Sbjct: 639 AGTKITFNISSKITGFVKIKKKFNNFKIKILPGSIYYPKEKQKNFKQNGILIPP----GE 694
Query: 724 NSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKL---FPQDLFKEWDNL 780
E + NW Y++WI +K F L+RP I Y I + N + L F DL KE +
Sbjct: 695 KIFEQFRAKNWIYLEWIVLSKDNSFFLIRPAIEYKIIFNDNPLTLPIPFYLDLLKEQKKI 754
Query: 781 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 840
+++ + +ILY + + + DT IQL++TCL+LNW E I+EA SF+++ N +I
Sbjct: 755 KIQTVKYILYEDSEEVEINPDTDIQLIQTCLILNW---ETKVFIKEAHISFIKIRINKII 811
Query: 841 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQS-------L 893
+ F +I+L++ + L++ +++ I +N F + I Q L
Sbjct: 812 KNFFQINLIE-------------NINLMNKKKNNNIILNYLFKKKRYIINQKDCEKILLL 858
Query: 894 SQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFN----NVKYHNGI--------KEEIN 941
S+ G IR N+N+E F+ILS N FQ F+ N+K N + K+ I
Sbjct: 859 SKTWGIIRTPSNKNQEKSFFLILSPFNLFQTILFDKTKQNLKIENNVEKLFTYEPKKIIK 918
Query: 942 QFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ-LNKFKETFQVIKY 1000
F + LG LG I F + + SI N ++ K+ ++ K+
Sbjct: 919 TFNIEKRKNFVEFLGLLGYLQNITKSFQLFSCKKFSD-KSIPINFSIIDNLKKKIKISKW 977
Query: 1001 YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 1060
+ ++EN+++ K L N IL+ LNW F + +K + +LG F C+ + I +
Sbjct: 978 FFLNENKKVQKFFLTQNTILS--LLNWSFPIFDLAKKKTQLFNLGHFFCDGLSIAEYPTF 1035
Query: 1061 PNLKSGQVITVQMDF-VGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDI 1119
+SGQ+I + D + IRLA PYLAT GA IH +YGE++ EGDIL+T IYE+ +SGDI
Sbjct: 1036 S--ESGQIIAIYDDLSLVIRLAKPYLATGGAIIHNNYGEIVKEGDILITLIYERLKSGDI 1093
Query: 1120 TQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLV 1179
QGLPKVEQ+LE R + +S+NLEK WN+ +T G W + + A++++ QS+++LV
Sbjct: 1094 IQGLPKVEQLLEARLTNPVSINLEKGFGEWNKDMTNFFGSLWGYFLSAQISMEQSQVNLV 1153
Query: 1180 NKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALE 1239
N+IQ+VYRSQGV+I ++HIEIIVRQ+TSKV EDGM+N F PGELI RA+R RALE
Sbjct: 1154 NQIQKVYRSQGVNISDKHIEIIVRQMTSKVFTLEDGMTNGFLPGELIEFARAKRMNRALE 1213
Query: 1240 ESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGII 1299
E I Y+ +LLGITK SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKEN++LGGII
Sbjct: 1214 EVIPYKPVLLGITKASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVILGGII 1273
Query: 1300 PVGTGFKKI 1308
P GTG +++
Sbjct: 1274 PTGTGCEEV 1282
>RPC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1373
Score = 938 bits (2424), Expect = 0.0
Identities = 550/1376 (39%), Positives = 806/1376 (57%), Gaps = 115/1376 (8%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
M+++ ++++N+V+ + +K +ISRLI + G+ S +LDQ+KT+GF AT ISLGID
Sbjct: 1 MSKKTKILYYNQVMDRSGMKNLISRLISYIGVTSASEVLDQLKTIGFNYATKFGISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLT P KGW +QDAE+ + I EKH+ YG +HAVEKLRQ IE WY TSEYL+QEM+PNF
Sbjct: 61 DLLTTPFKGWFMQDAEKHASISEKHNRYGTIHAVEKLRQLIETWYTTSEYLKQEMSPNFK 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
+TDP+NPVH+MSFSGARGNASQVHQLVGMRGLM+DPQGQ+IDLPIQSN REGLSLTEYII
Sbjct: 121 ITDPYNPVHMMSFSGARGNASQVHQLVGMRGLMADPQGQIIDLPIQSNFREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRT+DAGYLTRRLVEVVQHIVVR+ DCG++ GI + + +
Sbjct: 181 SCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRKIDCGSIDGIQLKPLKEKKIKNLF 240
Query: 241 --IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWIC 298
L+GRVLA D++I RCI RNQDIG L IN+Q + I IR+P TC++ W+C
Sbjct: 241 GSADRLVGRVLATDLFIDKRCIAKRNQDIGSELAINIINYQKKAILIRSPLTCKSKQWLC 300
Query: 299 RLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNG 358
+ CYG SP +G++VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE+VR+P NG
Sbjct: 301 QYCYGWSPCYGDMVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRAPFNG 360
Query: 359 KIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQ 418
F+E + TR+RHGHPA++ D+ +TI+ +I H + IP S +L++ +QYVKS+Q
Sbjct: 361 IAFFSETNLQATRSRHGHPAWISKEDIKITIQYEEIEHKLNIPANSLILIKTNQYVKSKQ 420
Query: 419 IIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
++AE+RA LKE++ K+I+SD GE+HW + H SE+ YSN+H + T H+W++S
Sbjct: 421 VLAEVRA--KIAPLKEQIEKYIYSDLSGEIHWGFPVRHTSEYIYSNLHTVQNTGHIWVVS 478
Query: 479 GNSHKSDTVSLSLLKDQD----------------------QMSTHSLPTAKRNTSNFLVS 516
GN S+ L K D S+ +K+N +N + S
Sbjct: 479 GNIKNSNKNLLLFYKKGDYILKDFLNKKLNINFQVYNKKLNFYQKSIRNSKKNINNLINS 538
Query: 517 NNQVRLCPDHC----HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISV 572
+ + + + ++ + N+ ++ N++ + + + E+N +
Sbjct: 539 TEFLNINSSAIFATYRYKNTKMNENNPNIFSETNLNKYSLKKFYNFVLEKNQK------- 591
Query: 573 EIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIH---SIFQKEDLIEYRGIREFKP 629
I N+ +A ++ ++ GI KY +I I S F ++ I+ K
Sbjct: 592 ------FISNNTKIASSSIYKHHIENCGIIKYGSIQIKPFPSNFDQDLNTIKEKIKPLKL 645
Query: 630 KYQ-IKVDRFFFIPQEVH-ILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKK 687
KY+ I F+IP+ VH ++ SSI+V++ I T I GLV+++
Sbjct: 646 KYELINSGTIFWIPEYVHTLVCSRSSILVQDGMFIEAGTEIFRGFFMPESGLVQIKSKTN 705
Query: 688 KI-ELKIFSGDIHFPGEI-DKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKK 745
KI E+ I G + +I D + + P E + K Y+ K+
Sbjct: 706 KIHEITIVPGKLLDSIDIFDNLKKQKFFFYPGEEI-----IPGIKAEVLTYLYLFGVNKQ 760
Query: 746 KYFVLVRPVILYDIAD-SINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSI 804
K +L+RP + I N + L P +F ++++ + FI+Y +G+ +R I
Sbjct: 761 KNKLLLRPAKEFFIEKLRKNPINLIP--IFGTKKDIKIALFEFIVYEDGQQVRS--KGKI 816
Query: 805 QLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSS 864
+LV+TCL+ N +K E A ++V L FL + + + N
Sbjct: 817 ELVQTCLITN---IKKGPYSENAKFFSIDVFFKNLRNRFL-------NFCFSNQTNFEKM 866
Query: 865 SGLISYNESDRININPFFSIYKENI-----QQSLSQKHGTIRMLLNRNKENRSFIILSSS 919
+++++ + KEN+ + SL Q G +++L +N N++ + +S
Sbjct: 867 LSKRNFHKNLYFCFKTLNNKNKENLANKKNKDSLIQNKGYLQLLETKNTINKNLLFVSRK 926
Query: 920 NCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQ---------------- 963
N Q + Y+ KE++ + ++ KI + Q
Sbjct: 927 NQIQ------ILYNKITKEDLKENYKDINTISKIKKTKIYHTDQQVFTIQSFYLLNKNLG 980
Query: 964 -IANFFS----FYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNI 1018
+ NF+ F + +NKI + KK+L L+ + ++L+DE+ ++ N
Sbjct: 981 LLGNFYKNKLLFQFIFDYNKIKTYKKDLSLDINTNLLKNKNWFLIDESNNFFQLKTRKNQ 1040
Query: 1019 ILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGI 1078
+ + D I+LG F +NV + T+ P +SGQ++ ++
Sbjct: 1041 NVKQKKIEKDI-----------RINLGNFFSQNVVLFNTRQLP--ESGQILYIEKKICVF 1087
Query: 1079 RLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSI 1138
RL PYLAT A I+G+Y +++ GD +T +YE+ ++ DI QGLPKVEQ+LE R ++++
Sbjct: 1088 RLCRPYLATKNAIIYGNYKQIITSGDNFITIVYERFKTRDIIQGLPKVEQLLEARPLNNL 1147
Query: 1139 SMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHI 1198
S NL+ WN I+ +LG PW F + + + I QS++ LVN+IQ+VY+SQGV I ++H+
Sbjct: 1148 SSNLDFGFLDWNTDISRLLGNPWGFFLSSLIIIRQSQLELVNQIQKVYQSQGVQISDKHL 1207
Query: 1199 EIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNT 1258
EIIVRQ+TS+VL +E+ N F PGEL+ L +AQR + LE S+ Y+ +LLGIT+ SLNT
Sbjct: 1208 EIIVRQMTSRVLTTEENGPNAFLPGELVDLFKAQRMNQILENSLAYKPILLGITRASLNT 1267
Query: 1259 QSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSA 1314
SFISEASFQET +VL KAAL+GRIDWL+GLKEN++LGGIIP GTG++KI ++ ++
Sbjct: 1268 YSFISEASFQETTKVLTKAALQGRIDWLQGLKENVILGGIIPAGTGYQKILNKKNS 1323
>RPC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1479
Score = 900 bits (2325), Expect = 0.0
Identities = 449/616 (72%), Positives = 523/616 (84%), Gaps = 19/616 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GT +KR+ISRLIDHFGM YTSHILDQ+KTLGF QATTTSISLGI+
Sbjct: 1 MAERANLVFHNKEIDGTGMKRLISRLIDHFGMGYTSHILDQLKTLGFHQATTTSISLGIE 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS +LEKH++YG VHAVEKLRQS+EIWYATSEYL+QEMN NF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFLLEKHYYYGAVHAVEKLRQSVEIWYATSEYLKQEMNSNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
+TDP NPV++MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 ITDPSNPVYLMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRT+DAGYLTRRLVEVVQHI+VRR DCGT+RGISV+ +N M+E++
Sbjct: 181 SCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIRGISVSPQNG-MTEKLF 239
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNT 294
+QTLIGRVLADDIYIGSRCI RNQDIGIGL+NRFI F+ QPI+IRTPFTCR+T
Sbjct: 240 VQTLIGRVLADDIYIGSRCIAARNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRST 299
Query: 295 SWICRLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRS 354
SWIC+LCYGRSP H +LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTA+ VRS
Sbjct: 300 SWICQLCYGRSPTHSDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRS 359
Query: 355 PSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYV 414
PSNGKIKFNEN +PTRTRHG PAFLCYIDL+VTI+S DI+++V IP KS +LVQNDQYV
Sbjct: 360 PSNGKIKFNENLVHPTRTRHGQPAFLCYIDLHVTIQSQDILYSVNIPSKSLILVQNDQYV 419
Query: 415 KSEQIIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHL 474
KSEQ+IAEIRAGT TL+ KE+V+KHI+S+S+GEMHWST++YH E+ Y N+ LPKTSHL
Sbjct: 420 KSEQVIAEIRAGTSTLHFKERVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHL 479
Query: 475 WILSGNSHKSDTVSLSLLKDQDQMSTHSLPTAK---RNTSNFLVSNNQVRLCPDHCHFMH 531
WILS + +S S SL KDQDQM+T+ + +TS+ ++SN H +F++
Sbjct: 480 WILSVSMCRSSIASFSLHKDQDQMNTYGKKDREILDYSTSDRIMSNG-------HWNFIY 532
Query: 532 PTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDD 591
P+I D S+LLAKKRRNRF+IP + +E+ IS+EIP+ G++ +N+I AYFDD
Sbjct: 533 PSIFQDNSDLLAKKRRNRFVIPLQYHQEQEKELISCFGISIEIPLMGVLRRNTIFAYFDD 592
Query: 592 PQYR--TQSSGIAKYK 605
P+YR + SGI K++
Sbjct: 593 PRYRKDKKGSGIVKFR 608
Score = 802 bits (2072), Expect = 0.0
Identities = 449/730 (61%), Positives = 545/730 (74%), Gaps = 30/730 (4%)
Query: 603 KYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSII 662
+Y++ SI +KE LIE+RG +EF KYQ +VDRFFFI QE+HIL SSS+ + +NSII
Sbjct: 742 EYESPEEDSILKKEGLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKILDNSII 801
Query: 663 GVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKK 722
GV+T +T N +SR+GGLVRV++ K ELKIFSGDIHFP E DKI LIPPE +K
Sbjct: 802 GVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKIL--GGCLIPPER-QK 858
Query: 723 KNSKESKKKTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL 780
K+SKESKK+ NW Y+Q I +K+KYFV VRP + Y++ + NL LFPQDL +E +NL
Sbjct: 859 KDSKESKKRKNWVYVQRKKILKSKEKYFVSVRPTVAYEMDEGRNLATLFPQDLLQEENNL 918
Query: 781 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 840
+++++NFI + N K + I T+ Q VRTCLV+NW ++EK E+A AS VEV N LI
Sbjct: 919 QIRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLI 974
Query: 841 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI 900
R FLRI+LVKS ISY RKR D +S+G I +N DR NIN F+S K +SLSQ I
Sbjct: 975 RDFLRIELVKSTISYTRKRYDRTSAGPIPHNRLDRANINSFYSKAKI---ESLSQHPEAI 1031
Query: 901 RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLG- 959
LLNRNKE S +ILS+SNC ++G F N K+ N IKE N +IPI+ GPLG
Sbjct: 1032 GTLLNRNKEYHSLMILSASNCSRIGLFKNSKHPNAIKEW------NPRIPIREIFGPLGA 1085
Query: 960 VAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLMDENERIYKPDLYN 1016
+ I++F S Y+L+THNKI +KK L ++ K+TFQV+ KY L+DEN+RI D +
Sbjct: 1086 IVASISHFSSSYYLLTHNKIL-LKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--S 1142
Query: 1017 NIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFV 1076
NI+L+PF LN F+H + E+T II LGQFICENVC+ ++ KSGQ+ V M+
Sbjct: 1143 NIMLDPFLLNCHFVHHDSWEETLAIIHLGQFICENVCLFKSHIK---KSGQIFIVNMNSF 1199
Query: 1077 GIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1136
IR A PYLAT GAT++GHYGE+LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSID
Sbjct: 1200 VIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSID 1259
Query: 1137 SISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNR 1196
S+S NLE+RI+ WNERI ILG+PW FLIGAELTIAQSRISLVNKIQ+VYRSQGV IHNR
Sbjct: 1260 SLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNR 1319
Query: 1197 HIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSL 1256
HIEII+RQ+TSKV VSEDGMSNVFSPGELIGLLRA+R GRAL+ESI YR +LLGIT+ SL
Sbjct: 1320 HIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRASL 1379
Query: 1257 NTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQ 1316
NTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+VLGGIIPVGTGF+K RS Q
Sbjct: 1380 NTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSP--Q 1437
Query: 1317 DTKITLETIK 1326
D + E K
Sbjct: 1438 DKNLYFEIKK 1447
>RPC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1527
Score = 893 bits (2307), Expect = 0.0
Identities = 450/653 (68%), Positives = 532/653 (80%), Gaps = 33/653 (5%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLIDHFGM YTSHILDQ+KTLGF QATTTSISLGI+
Sbjct: 1 MAERANLVFHNKEIDGTAMKRLISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIE 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS +LEKH++YG +HAVEKLRQS+EIWYATSEYL+QEMN NF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFLLEKHYYYGAIHAVEKLRQSVEIWYATSEYLKQEMNSNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
+TDP NPV++MSFSGARGNASQVHQLVGMRGLM+DPQGQMI LPIQSNLREGLSLTEYII
Sbjct: 121 ITDPSNPVYLMSFSGARGNASQVHQLVGMRGLMADPQGQMIHLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRT+DAGYLTRRLVEVVQHI+VRR DCGT++GISV+ +N M+E++
Sbjct: 181 SCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQGISVSPQNG-MTEKLF 239
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNT 294
+QTLIGRVLADDIYIGSRCI RNQDIGIGL+NRFI F+ QPI+IRTPFTCR+T
Sbjct: 240 VQTLIGRVLADDIYIGSRCIASRNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRST 299
Query: 295 SWICRLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRS 354
SWIC+LCYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTA+ +RS
Sbjct: 300 SWICQLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLIRS 359
Query: 355 PSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYV 414
PSNGKI+FNE+ +PTRTRHG PAFLCYIDL+VTI+S DI+H+V IP KS +LVQNDQYV
Sbjct: 360 PSNGKIQFNEDLVHPTRTRHGQPAFLCYIDLHVTIQSQDILHSVNIPLKSLILVQNDQYV 419
Query: 415 KSEQIIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHL 474
+SEQ+IAEIRAGT TL+ KEKV+KHI+S+S+GEMHWST++YH E+ Y N+ LPKTSHL
Sbjct: 420 ESEQVIAEIRAGTSTLHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHL 479
Query: 475 WILSGNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------- 521
WILS + +S S SL KDQDQM+T+S R +F ++N+QV
Sbjct: 480 WILSVSMCRSSIASFSLHKDQDQMNTYSFSVDGRYIFDFSMANDQVSHRLLDTFGKKDRE 539
Query: 522 ----LCPD------HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDIS 571
L PD H + +P+I D S+LLAKKRRNR ++P + +E+ IS
Sbjct: 540 ILDYLTPDRIVFNGHWNCFYPSILQDNSDLLAKKRRNRLVVPLQYHQEQEKERISCLGIS 599
Query: 572 VEIPIDGIIHKNSILAYFDDPQYR--TQSSGIAKYKTIGIHSIFQKEDLIEYR 622
+EIP G++ +N+I AYFDDP+YR + SGI K++ + ++ ++ EYR
Sbjct: 600 MEIPFMGVLRRNTIFAYFDDPRYRKDKRGSGIVKFRYRTLEEEYRTQE-EEYR 651
Score = 809 bits (2089), Expect = 0.0
Identities = 454/743 (61%), Positives = 544/743 (73%), Gaps = 30/743 (4%)
Query: 590 DDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILS 649
+D + ++ +Y + SI +KE IE+RG +EF KYQ +VDRFFFI QE+HIL
Sbjct: 766 EDSEEDSEEDSEDEYGSPEEDSILKKEGFIEHRGTKEFSLKYQKEVDRFFFILQELHILP 825
Query: 650 ESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQ 709
SSS+ V +NSIIGV+T +T N +SR+GGLVRV++ K ELKIFSGDIHFP E DKI
Sbjct: 826 RSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILG 885
Query: 710 HSAILIPPEMVKKKNSKESKKKTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVK 767
S LIPPE +KK+SKESKK+ NW Y+Q +K+KYFV VRP + Y++ + INL
Sbjct: 886 GS--LIPPER-EKKDSKESKKRKNWVYVQRKKFLKSKEKYFVSVRPAVAYEMDEGINLAT 942
Query: 768 LFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEA 827
LFPQDL +E DNL+L+++NFI + N K + I T+ Q VRTCLV+NW ++EK E A
Sbjct: 943 LFPQDLLQEEDNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EGA 998
Query: 828 LASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKE 887
AS VEV TN LIR FLRI+LVKS I Y R+R D +S GLI N DR N N F+S K
Sbjct: 999 RASLVEVKTNDLIRDFLRIELVKSTILYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKI 1058
Query: 888 NIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNH 947
QSLSQ I LLNRNKE S +IL +SNC ++G F N KY N +KE N
Sbjct: 1059 ---QSLSQHQEVIGTLLNRNKEYPSLMILLASNCSRIGLFKNSKYPNAVKES------NP 1109
Query: 948 KIPIKISLGPLGV-APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLM 1003
+IPI+ G LGV P I+NF S Y+L+THN+I +KK L L+ K+T QV+ KY L+
Sbjct: 1110 RIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQIL-LKKYLFLDNLKQTLQVLQGLKYSLI 1168
Query: 1004 DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNL 1063
DEN+RI D +NI+L PFHLNW F+H + E+T II LGQFICEN+C+ +
Sbjct: 1169 DENKRISNFD--SNIMLEPFHLNWHFLHHDSWEETLAIIHLGQFICENLCLFKLHIK--- 1223
Query: 1064 KSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGL 1123
KSGQ+ V MD +R A PYLAT GAT+HGHYG++LY+GD LVTFIYEKSRS DITQGL
Sbjct: 1224 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1283
Query: 1124 PKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQ 1183
PKVEQ+ E RSIDS+S NLE+RI+ WNERI ILG+PW FLIGAELTIAQSRISLVNKIQ
Sbjct: 1284 PKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQ 1343
Query: 1184 RVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESIC 1243
+VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRA+R GRAL+ESI
Sbjct: 1344 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY 1403
Query: 1244 YRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGT 1303
YR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+VLGGIIPVGT
Sbjct: 1404 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGT 1463
Query: 1304 GFKKIGDRSSARQDTKITLETIK 1326
GF+K RS QD + LE K
Sbjct: 1464 GFQKFVHRSP--QDKNLYLEIQK 1484
>RPC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1513
Score = 874 bits (2258), Expect = 0.0
Identities = 438/636 (68%), Positives = 519/636 (80%), Gaps = 32/636 (5%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVF NK I GTA+KR+ISRLIDHFGM YTSHILDQ+KTLGF QATTTSISLGI+
Sbjct: 1 MAERANLVFQNKEIDGTAMKRLISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIE 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS +LEKH++YG VHAVEKLRQS+EIWYATSEYL+ EMN NF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSFLLEKHYYYGAVHAVEKLRQSVEIWYATSEYLKHEMNSNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
+TDP NPV++MSFSGARGNASQVHQLVGMRGLM+DPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 ITDPSNPVYLMSFSGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRT+DAGYLTRRLVEVVQHI+VRR DCGT++ ISV+ +N M+E++
Sbjct: 181 SCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQAISVSPQNG-MTEKLF 239
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNT 294
+QTLIGRVLA+DIYIGSRCI RNQDIGIGL+NRFI F+ QPI+IRTPFTCR+T
Sbjct: 240 VQTLIGRVLANDIYIGSRCIATRNQDIGIGLVNRFITTFRAQPFRAQPIYIRTPFTCRST 299
Query: 295 SWICRLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRS 354
SWIC+LCYGRS HG+LVELGEAVG+IAGQSIGEPGTQLTLRTFHTGGVFTGGTA+ VRS
Sbjct: 300 SWICQLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRS 359
Query: 355 PSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYV 414
PSNGKI+FN + +PTRTRHG PAFLCYIDL++TI+S DI+H+V IP KS +LVQNDQYV
Sbjct: 360 PSNGKIQFNGDLVHPTRTRHGQPAFLCYIDLHITIQSQDILHSVTIPSKSLILVQNDQYV 419
Query: 415 KSEQIIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHL 474
+SEQ+IAEIRAGT L+ KEKV+KHI+S+S+GEMHWST++YH E+ Y N+ LPKTSHL
Sbjct: 420 ESEQVIAEIRAGTSALHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHL 479
Query: 475 WILSGNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------- 521
WILS + +S S SL KDQDQM+T+S R +++++VR
Sbjct: 480 WILSVSMCRSSIASFSLHKDQDQMNTYSFSVDGRYIFGLSMADDEVRHRLLDTFGKKDRE 539
Query: 522 ----LCPD------HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDIS 571
PD H +F++P+I + +LLAKKRRNRF IP + +E+ IS
Sbjct: 540 ILDYSTPDRIMSNGHWNFVYPSILQNNFDLLAKKRRNRFAIPLQYHQEQEKEPISCFGIS 599
Query: 572 VEIPIDGIIHKNSILAYFDDPQYR--TQSSGIAKYK 605
+EIP G++ +N+I+AYFDDP+Y+ + SGI K++
Sbjct: 600 IEIPFMGVLRRNTIVAYFDDPRYKKDKKGSGIVKFR 635
Score = 793 bits (2048), Expect = 0.0
Identities = 443/730 (60%), Positives = 540/730 (73%), Gaps = 35/730 (4%)
Query: 611 SIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITL 670
S+ +K LIE+RG +EF KYQ +VDRFFFI QE+HIL SSS+ V +NSIIGV+T +T
Sbjct: 768 SVLKKGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTK 827
Query: 671 NKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKK 730
N +SR+GGLVRV++ K ELKIFSGDIHFP E DKI S LIP E +KK+SKESKK
Sbjct: 828 NTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGS--LIPLER-EKKDSKESKK 884
Query: 731 KTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFI 788
+ NW Y+QW I +K+KYFVLVRP + Y++ + NL LFPQDLF+E NL+L+++NFI
Sbjct: 885 RENWVYVQWKKILKSKEKYFVLVRPAVAYEMNEGRNLATLFPQDLFEEEGNLQLRLVNFI 944
Query: 789 LYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDL 848
+ N K + I T+ Q VRTCLVLNW ++EK EEA AS VE+ NGLIR FLRI L
Sbjct: 945 SHENSKLTQRIYHTNSQFVRTCLVLNWEQEEK----EEARASLVEIRANGLIRDFLRIGL 1000
Query: 849 VKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNK 908
+KS ISY RKR D S+GLI +N DR N N F+S K QSLSQ I LLNRNK
Sbjct: 1001 IKSTISYTRKRYDSRSAGLILHNRLDRTNTNSFYSKAKI---QSLSQHQEAIGTLLNRNK 1057
Query: 909 ENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPI-------KISLGPLG-V 960
E +S ++LS+SNC ++G F N K NG+KE N +IPI + G LG +
Sbjct: 1058 EYQSLMVLSASNCSRIGFFKNSKNPNGVKES------NPRIPIPKFWGLFRNFSGLLGTI 1111
Query: 961 APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLMDENERIYKPDLYNN 1017
AP I+NF S Y+L+T+N+I +KK+L L+ K+ F+V+ K+ L++EN+R D +N
Sbjct: 1112 APSISNFSSSYYLLTYNQIL-LKKHLLLDNLKQNFKVLQGLKHSLINENQRTSNFD--SN 1168
Query: 1018 IILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVG 1077
I+L+PF LNW F+ + E+T I LGQFICENVC+ ++ KSGQ+ V +D
Sbjct: 1169 IMLDPFQLNWHFLPHDSWEETSAKIHLGQFICENVCLFKSHIK---KSGQIFIVNIDSFV 1225
Query: 1078 IRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDS 1137
IR A PYLAT GAT+HGHYGE+LY+GD LVTFIYEK+RS DITQGLPKVEQ+ E RSIDS
Sbjct: 1226 IRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDS 1285
Query: 1138 ISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRH 1197
+S NLE+RI+ WNERI ILG PW FLIGAELTIAQSRISLVNKIQ+VYRSQGV IHNRH
Sbjct: 1286 LSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRH 1345
Query: 1198 IEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLN 1257
IEII+RQ+TSKV VSEDGMSNVFSPGELIGLLRA+R GRAL+ESI YR +LLGIT+ SLN
Sbjct: 1346 IEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLN 1405
Query: 1258 TQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQD 1317
TQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+VLGGIIPVGTGF+K R ++
Sbjct: 1406 TQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQNKN 1465
Query: 1318 TKITLETIKI 1327
++ K+
Sbjct: 1466 LYFEIQKKKL 1475
>RPC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1224
Score = 753 bits (1943), Expect = 0.0
Identities = 389/610 (63%), Positives = 460/610 (74%), Gaps = 29/610 (4%)
Query: 6 NLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGIDDLLTI 65
NL F+NKV+ TAIK++ISRLIDHFGM YTSHILDQ+KT GF+QAT T+ISLGIDDLLT
Sbjct: 19 NLPFYNKVMDKTAIKKLISRLIDHFGMTYTSHILDQLKTSGFQQATDTAISLGIDDLLTA 78
Query: 66 PSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFSMTDPF 125
PSKGWLVQDAEQQ + EK +HYGNVHAVEKLRQSIEIWYATSEYLR+EMNPNFSMTDP
Sbjct: 79 PSKGWLVQDAEQQGSVSEKQNHYGNVHAVEKLRQSIEIWYATSEYLRKEMNPNFSMTDPL 138
Query: 126 NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGA 185
NPVH+MSFSGARG+ SQVHQLVGMRGLMSDPQGQ+IDLPI+ NLREGLSLTEYIISCYGA
Sbjct: 139 NPVHVMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIRRNLREGLSLTEYIISCYGA 198
Query: 186 RKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNT---RNRMMSERIL-I 241
RKGVVDTAVRT+DAGYLTRRLVEVVQHIVVRRTDCGT++GI V+ R R +E ++
Sbjct: 199 RKGVVDTAVRTADAGYLTRRLVEVVQHIVVRRTDCGTIQGIFVSPIRGRERDRNEIVVRT 258
Query: 242 QTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLC 301
Q LIGRVLADD+YI RCI RNQDIG+GL N+ IN +TQPI+IRTPFTC++ S IC+LC
Sbjct: 259 QILIGRVLADDVYINRRCIATRNQDIGVGLANQLINLRTQPIYIRTPFTCKSISRICQLC 318
Query: 302 YGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIK 361
YGRS H +L+ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE++R+P NGKI+
Sbjct: 319 YGRSTTHSHLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRAPFNGKIE 378
Query: 362 FNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIA 421
FNEN YPTRTR+GHPA+LC+ +L +TI+ D + N+ IPP+S LLVQNDQYV+SEQ+IA
Sbjct: 379 FNENLVYPTRTRNGHPAYLCHNNLSITIDGQDQVQNLTIPPQSLLLVQNDQYVESEQLIA 438
Query: 422 EIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNS 481
E+RA T + KEKVRK+I+SD EGEMHWSTN+ H E+ NVH + +T +LWILSG
Sbjct: 439 EVRA--RTSSFKEKVRKNIYSDLEGEMHWSTNVCHAPEYVQGNVHPILRTGYLWILSGGI 496
Query: 482 HKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHP--------- 532
+ S V K QDQ+ ++ S+ V + R +C+
Sbjct: 497 YGSRVVPFPFHKYQDQVYVQPFVAKHQSLSDSYVDQVEHRSGDSNCYEKEEQIFSYSETE 556
Query: 533 ---TIS-----------PDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDG 578
TIS P+ N+ KK+ NRFI+ E+ PD + IP G
Sbjct: 557 TDRTISNKHRDSIYVFYPNNYNIKGKKQMNRFIVSLQCDKEWEKKIIPCPDAILRIPKSG 616
Query: 579 IIHKNSILAY 588
I+ +NSI Y
Sbjct: 617 ILQRNSIFGY 626
Score = 456 bits (1173), Expect = e-127
Identities = 270/555 (48%), Positives = 362/555 (64%), Gaps = 25/555 (4%)
Query: 757 YDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWN 816
+ I D N+ F DL +E DNL++++ I Y +G+ I+ + D SI LVRTC+ +W
Sbjct: 631 HGIPDGSNMTTPFSLDLSREGDNLQIQISYSISYEDGERIQVMSDISIPLVRTCIGFDW- 689
Query: 817 EDEKSSSIE-EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDR 875
E+ SIE EA S + V TN ++ ++I L+K ++ +R++ +S L+ +N D
Sbjct: 690 --EQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYPPFFMGRRDNKTSPNLMFHNNLDH 747
Query: 876 ININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVK-YHN 934
N+ + Q +S+ G I L N +++ SF++LS S+ F++ FN+ K Y
Sbjct: 748 TNL-----LSSNGASQLISKHQGIICSLSNGEEDSGSFMVLSPSDYFRIVLFNDSKCYDT 802
Query: 935 GIKEEINQFKRNHKIPIKISL---GPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF 991
G NQ N K P++ + G LG I N F H +T+ K+ S K ++ N F
Sbjct: 803 G-----NQ--SNRKDPMRKIIEFSGLLGNLHSITNRFPSSHFLTYKKVLSKKHSIFHNSF 855
Query: 992 KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNW--DFIHPNYCEKTFPIISLGQFIC 1049
TFQV KYY MDEN IY D NII N NW +CEKTFP++SLGQ I
Sbjct: 856 N-TFQVPKYYFMDENMIIYHFDPCRNIISNLLGPNWCSSSSESEFCEKTFPVVSLGQLIP 914
Query: 1050 ENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTF 1109
E+V I +++ P +SGQ+I V + + IR A PYLAT AT+H HYG++L +GD L+T
Sbjct: 915 ESVWI--SEDEPLPESGQIIAVDEESLVIRSAKPYLATRKATVHSHYGKILDKGDTLITL 972
Query: 1110 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAEL 1169
IYE+ +S DI QGLPKVEQ+ E R +SISMNL++ + W +T LG W I A +
Sbjct: 973 IYERFKSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARI 1032
Query: 1170 TIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1229
T+ QS+I LVN+IQ+VYRSQGV I ++HIE+IVRQ+TSKVL+SEDG +NVFSPGELI L
Sbjct: 1033 TMEQSQIHLVNQIQKVYRSQGVRIGDKHIEVIVRQMTSKVLISEDGTANVFSPGELIVLS 1092
Query: 1230 RAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 1289
RAQR RALEE+I Y+T+LLGIT+ SLNTQSFISEASFQETARVLAKAAL+GRIDWLKGL
Sbjct: 1093 RAQRMDRALEEAIYYQTMLLGITRASLNTQSFISEASFQETARVLAKAALQGRIDWLKGL 1152
Query: 1290 KENLVLGGIIPVGTG 1304
KEN++LGG+IP GTG
Sbjct: 1153 KENVILGGMIPAGTG 1167
>RPC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC
2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1209
Score = 741 bits (1912), Expect = 0.0
Identities = 382/610 (62%), Positives = 457/610 (74%), Gaps = 31/610 (5%)
Query: 6 NLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGIDDLLTI 65
NL F+NKV+ TAIK++ISRLIDHFGM YTSHILDQ+KT GF+QAT T+ISLGIDDLLT
Sbjct: 19 NLPFYNKVMDKTAIKKLISRLIDHFGMTYTSHILDQLKTSGFKQATDTAISLGIDDLLTA 78
Query: 66 PSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFSMTDPF 125
PSKGWLVQDAEQQ + EK +HYGN+HAVEKLRQSIEIWYATSEYLR+EMN NFSMTDP
Sbjct: 79 PSKGWLVQDAEQQGSVSEKQNHYGNLHAVEKLRQSIEIWYATSEYLRKEMNTNFSMTDPL 138
Query: 126 NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGA 185
NPVH+MSFSGARGN SQVHQLVGMRGLMSDPQGQ+IDLPI+ NLREGLSLTEYIISCYGA
Sbjct: 139 NPVHVMSFSGARGNTSQVHQLVGMRGLMSDPQGQIIDLPIRRNLREGLSLTEYIISCYGA 198
Query: 186 RKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNT---RNRMMSERIL-I 241
RKGVVDTAVRT+DAGYLTRRLVEVVQ IVVRRTDCGTV+GI V+ R R ++E ++
Sbjct: 199 RKGVVDTAVRTADAGYLTRRLVEVVQQIVVRRTDCGTVQGIFVSPIRGRERDINEVVVRT 258
Query: 242 QTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLC 301
Q LIGRVLADD+YI RCI RNQDIG+GL N+ N + +PI+IRTPFTC++ S IC+LC
Sbjct: 259 QILIGRVLADDVYINRRCIATRNQDIGVGLANQLRNIRPRPIYIRTPFTCKSISRICQLC 318
Query: 302 YGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIK 361
YGRS H +L+ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE++R+P NGKI+
Sbjct: 319 YGRSTTHSHLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRAPFNGKIE 378
Query: 362 FNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIA 421
FNEN YPTRTR+GHPA+LC+ +L +TI+ + + N+ IPP+S LLVQNDQYV+SEQIIA
Sbjct: 379 FNENLVYPTRTRNGHPAYLCHNNLSITIDGQNQVQNLTIPPQSLLLVQNDQYVESEQIIA 438
Query: 422 EIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNS 481
E+RA T + KEKVRK+I+SD EGEMHWSTN+ H E+ + NVH + +T +LWILSG
Sbjct: 439 EVRA--RTSSFKEKVRKNIYSDLEGEMHWSTNVCHAPEYVHGNVHSILRTGYLWILSGGI 496
Query: 482 HKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFL-----------------------VSNN 518
+ S V K QDQ+ P ++T +++ +
Sbjct: 497 YGSGVVPFPFHKYQDQVDVQ--PFVAKHTDSYVDQVEHRSGDSNCYGKEEQIFSYSETET 554
Query: 519 QVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDG 578
+ +H ++ T SP N+ KK+ NRFI+ + PD + IP G
Sbjct: 555 DRTISNEHRDSIYVTFSPKNYNMKGKKQMNRFIVSLQCDKEWGKRIIPCPDAILRIPKSG 614
Query: 579 IIHKNSILAY 588
I+ NSI Y
Sbjct: 615 ILQINSIFGY 624
Score = 460 bits (1183), Expect = e-128
Identities = 273/553 (49%), Positives = 361/553 (64%), Gaps = 33/553 (5%)
Query: 757 YDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWN 816
+ I D N+ F DL +E DNL++++ N ILY +G+ I+ + DTSI LVRTCL +W
Sbjct: 629 HGIPDGPNMTTPFSLDLSREGDNLQIQISNSILYEDGERIQVMSDTSIPLVRTCLGFDW- 687
Query: 817 EDEKSSSIE-EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDR 875
E+ SIE EA S + V TN ++ ++I L+K ++ +R++ +SS L+ +N D
Sbjct: 688 --EQIDSIESEAYVSLISVRTNKIVNNMVQISLMKYPPFFMGRRDNKASSNLMFHNNLDH 745
Query: 876 ININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVK-YHN 934
N+ FS Q +S+ GTI L N +++ SF++LS S+CF++ FN+ K Y
Sbjct: 746 TNL---FS--SNGASQLISKHQGTICSLSNGEEDSGSFMVLSPSDCFRIVLFNDSKCYDT 800
Query: 935 GIKEEINQFKRNHKIPIKISL---GPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF 991
G K N K P++ + G LG I + F IT K+ S K ++ N
Sbjct: 801 GNKS-------NRKDPMRKIIEFSGLLGHLHSITSRFPSSQFITDKKVLSKKHSIFHN-- 851
Query: 992 KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICEN 1051
Y MDEN RI D NII N NW +C+KTFP++SLGQ I E+
Sbjct: 852 ---------YFMDENMRISHFDPCRNIISNLLGPNWCSSSSEFCKKTFPVVSLGQLIPES 902
Query: 1052 VCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIY 1111
V I +++ P +SGQ+I V + + IR A PYLAT AT+HGHYGE+L +GD L+T IY
Sbjct: 903 VWI--SEDEPLPESGQIIAVDEESLVIRSAKPYLATRKATVHGHYGEILDKGDTLITLIY 960
Query: 1112 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTI 1171
E+ +S DI QGLPKVEQ+ E R +SISMNL++ + W +T LG W I A +T+
Sbjct: 961 ERLKSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARITM 1020
Query: 1172 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1231
QS+I LVN+IQ+VYRSQGV I ++HIEIIVRQ+TSKVL+SEDG +NVFSPGELIGL RA
Sbjct: 1021 EQSQIHLVNQIQKVYRSQGVRIGDKHIEIIVRQMTSKVLISEDGTANVFSPGELIGLSRA 1080
Query: 1232 QRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1291
QR RALEE+I Y+T+LLGIT+ SLNTQSFISEASFQETARVLAKAAL+GRIDWLKGLKE
Sbjct: 1081 QRMDRALEETIYYQTMLLGITRASLNTQSFISEASFQETARVLAKAALQGRIDWLKGLKE 1140
Query: 1292 NLVLGGIIPVGTG 1304
N++LGG+IP GTG
Sbjct: 1141 NVILGGMIPAGTG 1153
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,521,924
Number of Sequences: 164201
Number of extensions: 6650233
Number of successful extensions: 17200
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15778
Number of HSP's gapped (non-prelim): 769
length of query: 1332
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1210
effective length of database: 39,941,532
effective search space: 48329253720
effective search space used: 48329253720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)
Description of BAB33196.1