BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33192.1 34 aa
(34 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PSBM_PEA (P34833) Photosystem II reaction center M protein (PSII-M) 66 2e-11
PSBM_TOBAC (P62111) Photosystem II reaction center M protein (PS... 65 5e-11
PSBM_SPIOL (P62112) Photosystem II reaction center M protein (PS... 65 5e-11
PSBM_ORYSA (P62110) Photosystem II reaction center M protein (PS... 65 5e-11
PSBM_ARATH (P62109) Photosystem II reaction center M protein (PS... 65 5e-11
PSBM_OENHO (Q9MTM8) Photosystem II reaction center M protein (PS... 64 6e-11
PSBM_MAIZE (P48189) Photosystem II reaction center M protein (PS... 63 1e-10
PSBM_WHEAT (Q9XPS6) Photosystem II reaction center M protein (PS... 62 4e-10
PSBM_MARPO (P12168) Photosystem II reaction center M protein (PS... 58 4e-09
PSBM_ANTFO (Q85BK0) Photosystem II reaction center M protein (PS... 58 6e-09
PSBM_PSINU (Q8WI22) Photosystem II reaction center M protein (PS... 54 6e-08
PSBM_NEPOL (Q9TL37) Photosystem II reaction center M protein (PS... 54 8e-08
PSBM_CHAGL (Q8MA15) Photosystem II reaction center M protein (PS... 54 1e-07
PSBM_CHLVU (P56325) Photosystem II reaction center M protein (PS... 53 1e-07
PSBM_CYAPA (P48107) Photosystem II reaction center M protein (PS... 50 1e-06
PSBM_CHLRE (P92277) Photosystem II reaction center M protein (PS... 50 2e-06
PSBM_PINTH (P41608) Photosystem II reaction center M protein (PS... 49 3e-06
PSBM_SYNEL (Q8DHA7) Photosystem II reaction center M protein (PS... 47 1e-05
PSBM_MESVI (Q9MUQ7) Photosystem II reaction center M protein (PS... 46 2e-05
PSBM_SYNY3 (P72701) Photosystem II reaction center M protein (PS... 45 4e-05
>PSBM_PEA (P34833) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 65.9 bits (159), Expect = 2e-11
Identities = 34/34 (100%), Positives = 34/34 (100%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
>PSBM_TOBAC (P62111) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 64.7 bits (156), Expect = 5e-11
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
>PSBM_SPIOL (P62112) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 64.7 bits (156), Expect = 5e-11
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
>PSBM_ORYSA (P62110) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 64.7 bits (156), Expect = 5e-11
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
>PSBM_ARATH (P62109) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 64.7 bits (156), Expect = 5e-11
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 34
>PSBM_OENHO (Q9MTM8) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 64.3 bits (155), Expect = 6e-11
Identities = 33/34 (97%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKTVSQS+
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSE 34
>PSBM_MAIZE (P48189) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 63.2 bits (152), Expect = 1e-10
Identities = 32/34 (94%), Positives = 33/34 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPTAFLLIIYVKT SQ+D
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTASQND 34
>PSBM_WHEAT (Q9XPS6) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 61.6 bits (148), Expect = 4e-10
Identities = 31/34 (91%), Positives = 34/34 (99%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFILVPT+FLLIIYVKTVSQ++
Sbjct: 1 MEVNILAFIATALFILVPTSFLLIIYVKTVSQNN 34
>PSBM_MARPO (P12168) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 58.2 bits (139), Expect = 4e-09
Identities = 28/33 (84%), Positives = 32/33 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVNILAFIATALFIL+PTAFLLI+YV+T SQ+
Sbjct: 1 MEVNILAFIATALFILIPTAFLLILYVQTASQN 33
>PSBM_ANTFO (Q85BK0) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 57.8 bits (138), Expect = 6e-09
Identities = 28/32 (87%), Positives = 31/32 (96%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
MEVNILAFIATALFIL+PTAFLLI+YV+T SQ
Sbjct: 1 MEVNILAFIATALFILIPTAFLLILYVQTASQ 32
>PSBM_PSINU (Q8WI22) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 54.3 bits (129), Expect = 6e-08
Identities = 27/34 (79%), Positives = 31/34 (90%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNILAFIATALFI +PTAFLLI YV+T +QS+
Sbjct: 1 MEVNILAFIATALFISIPTAFLLIPYVQTATQSN 34
>PSBM_NEPOL (Q9TL37) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 53.9 bits (128), Expect = 8e-08
Identities = 25/34 (73%), Positives = 30/34 (87%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNIL IATALFI++PT+FLLI+YVKT SQ +
Sbjct: 1 MEVNILGLIATALFIIIPTSFLLILYVKTASQQN 34
>PSBM_CHAGL (Q8MA15) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 53.5 bits (127), Expect = 1e-07
Identities = 26/31 (83%), Positives = 29/31 (92%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVS 31
MEVNILA IATALF+L+PTAFLLI+YVKT S
Sbjct: 1 MEVNILAVIATALFVLIPTAFLLILYVKTES 31
>PSBM_CHLVU (P56325) Photosystem II reaction center M protein
(PSII-M)
Length = 36
Score = 53.1 bits (126), Expect = 1e-07
Identities = 25/32 (78%), Positives = 29/32 (90%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
MEVNIL IATALFI++PT+FLLI+YVKT SQ
Sbjct: 1 MEVNILGVIATALFIIIPTSFLLILYVKTASQ 32
>PSBM_CYAPA (P48107) Photosystem II reaction center M protein
(PSII-M)
Length = 38
Score = 50.1 bits (118), Expect = 1e-06
Identities = 22/33 (66%), Positives = 30/33 (90%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVNIL IATALFI++PT+FLLI+Y++TV+ +
Sbjct: 1 MEVNILGLIATALFIVIPTSFLLILYIQTVASA 33
>PSBM_CHLRE (P92277) Photosystem II reaction center M protein
(PSII-M)
Length = 34
Score = 49.7 bits (117), Expect = 2e-06
Identities = 23/34 (67%), Positives = 27/34 (78%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
MEVNI ATALFI++PT+FLLI+YVKT S D
Sbjct: 1 MEVNIYGLTATALFIIIPTSFLLILYVKTASTQD 34
>PSBM_PINTH (P41608) Photosystem II reaction center M protein
(PSII-M)
Length = 37
Score = 48.5 bits (114), Expect = 3e-06
Identities = 25/33 (75%), Positives = 26/33 (78%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
MEVN LAFIA LF+ VPTAFLLI YVKT S S
Sbjct: 1 MEVNTLAFIAVLLFLAVPTAFLLIPYVKTASAS 33
>PSBM_SYNEL (Q8DHA7) Photosystem II reaction center M protein
(PSII-M)
Length = 36
Score = 46.6 bits (109), Expect = 1e-05
Identities = 22/32 (68%), Positives = 27/32 (83%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
MEVN L IATALF+LVP+ FL+I+YV+T SQ
Sbjct: 1 MEVNQLGLIATALFVLVPSVFLIILYVQTESQ 32
>PSBM_MESVI (Q9MUQ7) Photosystem II reaction center M protein
(PSII-M)
Length = 31
Score = 46.2 bits (108), Expect = 2e-05
Identities = 20/29 (68%), Positives = 26/29 (88%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKT 29
ME NILA +ATALFI++PTAFL+I+Y +T
Sbjct: 1 METNILALMATALFIIIPTAFLIILYAQT 29
>PSBM_SYNY3 (P72701) Photosystem II reaction center M protein
(PSII-M)
Length = 35
Score = 45.1 bits (105), Expect = 4e-05
Identities = 20/34 (58%), Positives = 28/34 (81%)
Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
M+VN L FIA+ LF+LVPT FLLI++++T QS+
Sbjct: 1 MQVNNLGFIASILFVLVPTVFLLILFIQTGKQSE 34
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.334 0.144 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,482,625
Number of Sequences: 164201
Number of extensions: 34265
Number of successful extensions: 247
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 22
length of query: 34
length of database: 59,974,054
effective HSP length: 10
effective length of query: 24
effective length of database: 58,332,044
effective search space: 1399969056
effective search space used: 1399969056
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 59 (27.3 bits)
Description of BAB33192.1