BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33214.1 31 aa
(31 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33214.1| hypothetical protein [Lotus corniculatus var. ja... 62 6e-09
emb|CAA60970.1| ycf7 [Beta vulgaris subsp. vulgaris] gi|860889|e... 53 3e-06
dbj|BAA84403.1| ORF31 [Arabidopsis thaliana] gi|7525051|ref|NP_0... 52 5e-06
ref|YP_086984.1| cyt b6/f complex subunit VI [Panax ginseng] gi|... 52 6e-06
emb|CAH41974.1| cytochrome b6-f complex subunit VI [Silene urale... 52 6e-06
emb|CAJ00776.1| cytochrone b6/f complex subunit VI [Cucumis sati... 51 8e-06
emb|CAG24643.1| cytochrome b6/f complex subunit VI [Silene soren... 50 2e-05
gb|AAV74353.1| PetL [Acorus gramineus] gi|60390292|sp|Q5QA80|PET... 50 2e-05
emb|CAB88746.1| cyt b6/f complex subunit VI [Spinacia oleracea] ... 50 2e-05
emb|CAA60303.1| hypothetical protein [Zea mays] gi|11467209|ref|... 49 3e-05
emb|CAA77419.1| cytochrome b/f complex 3.5kD subunit [Nicotiana ... 49 3e-05
emb|CAA75626.1| hypothetical protein [Populus deltoides] gi|7515... 49 4e-05
emb|CAG28645.1| cytochrome b6-f subunit VI [Beta vulgaris] gi|57... 49 4e-05
emb|CAH41975.1| cytochrome b6-f complex subunit VI [Silene paris... 49 4e-05
emb|CAG28657.1| cytochrome b6-f subunit VI [Ficus carica] 49 5e-05
emb|CAG28648.1| cytochrome b6-f subunit VI [Chenopodium bonus-he... 49 5e-05
emb|CAG28641.1| cytochrome b6-f subunit VI [Phytolacca americana... 49 5e-05
emb|CAG28631.1| cytochrome b6-f subunit VI [Laurus nobilis] 49 5e-05
emb|CAG28654.1| cytochrome b6-f subunit VI [Vitis vinifera] 48 7e-05
emb|CAG28652.1| cytochrome b6-f subunit VI [Saxifraga umbrosa] 48 9e-05
>dbj|BAB33214.1| hypothetical protein [Lotus corniculatus var. japonicus]
gi|13518456|ref|NP_084816.1| cytochrome b6/f complex
subunit VI [Lotus corniculatus var. japonicus]
gi|18202722|sp|Q9BBR4|PETL_LOTJA Cytochrome b6-f
complex subunit VI (Cytochrome b6f complex subunit
petL)
Length = 31
Score = 61.6 bits (148), Expect = 6e-09
Identities = 31/31 (100%), Positives = 31/31 (100%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLAVLTITSGLFISLRKLRLI
Sbjct: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
>emb|CAA60970.1| ycf7 [Beta vulgaris subsp. vulgaris] gi|860889|emb|CAA60965.1|
ycf7 [Beta vulgaris subsp. vulgaris]
gi|533297|dbj|BAA07217.1| ORF31 [Beta vulgaris subsp.
vulgaris] gi|7519698|pir||T14568 hypothetical protein
ycf7 - beet chloroplast gi|1172440|sp|P46612|PETL_BETVU
Cytochrome b6-f complex subunit VI (Cytochrome b6f
complex subunit petL)
Length = 31
Score = 52.8 bits (125), Expect = 3e-06
Identities = 25/31 (80%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>dbj|BAA84403.1| ORF31 [Arabidopsis thaliana] gi|7525051|ref|NP_051077.1|
cytochrome b6/f complex subunit VI [Arabidopsis
thaliana] gi|6685716|sp|P56776|PETL_ARATH Cytochrome
b6-f complex subunit VI (Cytochrome b6f complex subunit
petL)
Length = 31
Score = 52.0 bits (123), Expect = 5e-06
Identities = 26/31 (83%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTITSYFGFLLAALTITSVLFIGLSKIRLI 31
>ref|YP_086984.1| cyt b6/f complex subunit VI [Panax ginseng]
gi|51235331|gb|AAT98527.1| cyt b6/f complex subunit VI
[Panax ginseng] gi|60390362|sp|Q68RY8|PETL_PANGI
Cytochrome b6-f complex subunit VI (Cytochrome b6f
complex subunit petL)
Length = 31
Score = 51.6 bits (122), Expect = 6e-06
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLL LTITS LFI L K+RLI
Sbjct: 1 MPTITSYFGFLLVALTITSALFIGLSKIRLI 31
>emb|CAH41974.1| cytochrome b6-f complex subunit VI [Silene uralensis]
gi|52207988|emb|CAH41973.1| cytochrome b6-f complex
subunit VI [Silene uralensis]
gi|52207980|emb|CAH41968.1| cytochrome b6-f complex
subunit VI [Silene ostenfeldii]
gi|52207974|emb|CAH41964.1| cytochrome b6-f complex
subunit VI [Silene involucrata]
Length = 31
Score = 51.6 bits (122), Expect = 6e-06
Identities = 25/31 (80%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYFGFLLAALTITSVLFIGLNKIRLI 31
>emb|CAJ00776.1| cytochrone b6/f complex subunit VI [Cucumis sativus]
Length = 31
Score = 51.2 bits (121), Expect = 8e-06
Identities = 26/31 (83%), Positives = 27/31 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLAVLTITS LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAVLTITSALFIGLNKIRLI 31
>emb|CAG24643.1| cytochrome b6/f complex subunit VI [Silene sorensenis]
gi|45822447|emb|CAG24639.1| cytochrome b6/f complex
subunit VI [Silene uralensis]
Length = 30
Score = 50.1 bits (118), Expect = 2e-05
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRL 30
MPT+TSYFGFLLA LTITS LFI L K+RL
Sbjct: 1 MPTLTSYFGFLLAALTITSVLFIGLNKIRL 30
>gb|AAV74353.1| PetL [Acorus gramineus] gi|60390292|sp|Q5QA80|PETL_ACOGR
Cytochrome b6-f complex subunit VI (Cytochrome b6f
complex subunit petL)
Length = 31
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPTITSYFGFLLA TIT+ LFI L K+RLI
Sbjct: 1 MPTITSYFGFLLAASTITTALFIGLSKIRLI 31
>emb|CAB88746.1| cyt b6/f complex subunit VI [Spinacia oleracea]
gi|11497545|ref|NP_054953.1| cytochrome b6/f complex
subunit VI [Spinacia oleracea]
gi|18203260|sp|Q9M3L0|PETL_SPIOL Cytochrome b6-f
complex subunit VI (Cytochrome b6f complex subunit
petL)
Length = 31
Score = 49.7 bits (117), Expect = 2e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MSTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>emb|CAA60303.1| hypothetical protein [Zea mays] gi|11467209|ref|NP_043042.1|
cytochrome b6/f subunit VI [Zea mays]
gi|1363549|pir||S58569 hypothetical protein 31 - maize
chloroplast gi|342587|gb|AAA84479.1| ORF31
gi|140302|sp|P19445|PETL_MAIZE Cytochrome b6-f complex
subunit VI (Cytochrome b6f complex subunit petL)
Length = 31
Score = 49.3 bits (116), Expect = 3e-05
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTIT LFISL K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITPALFISLNKIRLI 31
>emb|CAA77419.1| cytochrome b/f complex 3.5kD subunit [Nicotiana tabacum]
gi|57283613|emb|CAG28655.1| cytochrome b6-f subunit VI
[Potentilla anserina] gi|57283609|emb|CAG28653.1|
cytochrome b6-f subunit VI [Ribes diacanthum]
gi|57283605|emb|CAG28651.1| cytochrome b6-f subunit VI
[Bergenia ciliata] gi|57283601|emb|CAG28649.1|
cytochrome b6-f subunit VI [Hamamelis virginiana]
gi|57283577|emb|CAG28637.1| cytochrome b6-f subunit VI
[Polygonum filiforme] gi|57283575|emb|CAG28636.1|
cytochrome b6-f subunit VI [Gunnera magellanica]
gi|57283573|emb|CAG28635.1| cytochrome b6-f subunit VI
[Ranunculus flammula] gi|57283571|emb|CAG28634.1|
cytochrome b6-f subunit VI [Helleborus lividus]
gi|20068349|emb|CAC88062.1| cyt b6/f complex subunit VI
[Atropa belladonna] gi|28261735|ref|NP_783250.1|
cytochrome b6/f complex subunit VI [Atropa belladonna]
gi|11465977|ref|NP_054519.1| cytochrome b6/f complex
subunit VI [Nicotiana tabacum]
gi|60392904|sp|P69402|PETL_ATRBE Cytochrome b6-f
complex subunit VI (Cytochrome b6f complex subunit
petL) gi|60392903|sp|P69401|PETL_TOBAC Cytochrome b6-f
complex subunit VI (Cytochrome b6f complex subunit
petL)
Length = 31
Score = 49.3 bits (116), Expect = 3e-05
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
>emb|CAA75626.1| hypothetical protein [Populus deltoides] gi|7515241|pir||T09121
hypothetical protein 31 - cottonwood chloroplast
gi|18201982|sp|O20272|PETL_POPDE Cytochrome b6-f
complex subunit VI (Cytochrome b6f complex subunit
petL)
Length = 31
Score = 48.9 bits (115), Expect = 4e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSYFGFLL LTIT LFISL K+RLI
Sbjct: 1 MPTLTSYFGFLLVALTITLVLFISLSKIRLI 31
>emb|CAG28645.1| cytochrome b6-f subunit VI [Beta vulgaris]
gi|57283591|emb|CAG28644.1| cytochrome b6-f subunit VI
[Amaranthus chlorostachys] gi|57283589|emb|CAG28643.1|
cytochrome b6-f subunit VI [Amaranthus caudatus]
Length = 31
Score = 48.9 bits (115), Expect = 4e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>emb|CAH41975.1| cytochrome b6-f complex subunit VI [Silene parishii]
Length = 31
Score = 48.9 bits (115), Expect = 4e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
MPT+TSY GFLLA LTITS LFI L K+RLI
Sbjct: 1 MPTLTSYXGFLLAALTITSVLFIGLNKIRLI 31
>emb|CAG28657.1| cytochrome b6-f subunit VI [Ficus carica]
Length = 31
Score = 48.5 bits (114), Expect = 5e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTITS +FI L K+RLI
Sbjct: 1 MFTITSYFGFLLAALTITSAIFIGLNKIRLI 31
>emb|CAG28648.1| cytochrome b6-f subunit VI [Chenopodium bonus-henricus]
gi|57283595|emb|CAG28646.1| cytochrome b6-f subunit VI
[Spinacia oleracea]
Length = 31
Score = 48.5 bits (114), Expect = 5e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MFTLTSYFGFLLAALTITSALFIGLNKIRLI 31
>emb|CAG28641.1| cytochrome b6-f subunit VI [Phytolacca americana]
gi|57283583|emb|CAG28640.1| cytochrome b6-f subunit VI
[Delosperma cooperi] gi|57283581|emb|CAG28639.1|
cytochrome b6-f subunit VI [Ceratostigma
plumbaginoides] gi|57283579|emb|CAG28638.1| cytochrome
b6-f subunit VI [Polygonum bistorta]
Length = 31
Score = 48.5 bits (114), Expect = 5e-05
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M T+TSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTLTSYFGFLLAALTITSALFIGLSKIRLI 31
>emb|CAG28631.1| cytochrome b6-f subunit VI [Laurus nobilis]
Length = 31
Score = 48.5 bits (114), Expect = 5e-05
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTITS L ISL K+RLI
Sbjct: 1 MITITSYFGFLLAALTITSALLISLSKIRLI 31
>emb|CAG28654.1| cytochrome b6-f subunit VI [Vitis vinifera]
Length = 31
Score = 48.1 bits (113), Expect = 7e-05
Identities = 25/31 (80%), Positives = 26/31 (83%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTITS LFI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITSVLFIGLSKIRLI 31
>emb|CAG28652.1| cytochrome b6-f subunit VI [Saxifraga umbrosa]
Length = 31
Score = 47.8 bits (112), Expect = 9e-05
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 1 MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
M TITSYFGFLLA LTITS FI L K+RLI
Sbjct: 1 MLTITSYFGFLLAALTITSAFFIGLSKIRLI 31
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.338 0.151 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,757,366
Number of Sequences: 2540612
Number of extensions: 597192
Number of successful extensions: 3190
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3133
Number of HSP's gapped (non-prelim): 57
length of query: 31
length of database: 863,360,394
effective HSP length: 7
effective length of query: 24
effective length of database: 845,576,110
effective search space: 20293826640
effective search space used: 20293826640
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 69 (31.2 bits)
Description of BAB33214.1