BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33196.1 1332 aa
(1332 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33196.1| RNA polymerase beta' subunit-2 [Lotus corniculat... 2658 0.0
gb|AAL07336.1| rpoC2 [Glycine max] gi|41018056|sp|Q8HVY3|RPOC2_S... 2132 0.0
emb|CAJ00748.1| RNA polymerase beta'' chain [Cucumis sativus] 2020 0.0
emb|CAA77410.1| RNA polymerase beta'' subunit [Nicotiana tabacum... 2009 0.0
sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase beta'' chain (... 2009 0.0
emb|CAC88034.1| RNA polymerase beta II subunit [Atropa belladonn... 1989 0.0
ref|YP_086956.1| RNA polymerase beta II subunit [Panax ginseng] ... 1986 0.0
emb|CAB88715.1| RNA polymerase beta'' subunit [Spinacia oleracea... 1963 0.0
emb|CAD28711.1| RNA polymerase beta' subunit-2 [Calycanthus flor... 1954 0.0
dbj|BAD93459.1| RNA polymerase beta chain [Silene latifolia] 1931 0.0
dbj|BAA84375.1| RNA polymerase beta' subunit-2 [Arabidopsis thal... 1921 0.0
emb|CAB67153.1| RNA polymerase beta'' subunit [Oenothera elata s... 1884 0.0
emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinap... 1880 0.0
gb|AAX58144.1| RNA polymerase beta II subunit [Lactuca sativa] 1875 0.0
emb|CAF28583.1| RNA polymerase beta' subunit-2 [Nymphaea alba] g... 1802 0.0
emb|CAA27545.1| unnamed protein product [Pisum sativum] gi|81957... 1734 0.0
emb|CAA28063.1| rpoC2 [Marchantia polymorpha] gi|66985|pir||RNLV... 1255 0.0
dbj|BAC55419.1| RNA polymerase beta'' subunit [Anthoceros formos... 1214 0.0
dbj|BAC85071.1| RNA polymerase beta'' subunit [Physcomitrella pa... 1208 0.0
pir||A05028 rpoC protein homolog - common tobacco chloroplast 1117 0.0
>dbj|BAB33196.1| RNA polymerase beta' subunit-2 [Lotus corniculatus var. japonicus]
gi|13518438|ref|NP_084798.1| RNA polymerase beta'' chain
[Lotus corniculatus var. japonicus]
gi|23822109|sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1332
Score = 2658 bits (6889), Expect = 0.0
Identities = 1332/1332 (100%), Positives = 1332/1332 (100%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID
Sbjct: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL
Sbjct: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI
Sbjct: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII
Sbjct: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN
Sbjct: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSN 540
SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSN
Sbjct: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSN 540
Query: 541 LLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSG 600
LLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSG
Sbjct: 541 LLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSG 600
Query: 601 IAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNS 660
IAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNS
Sbjct: 601 IAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNS 660
Query: 661 IIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMV 720
IIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMV
Sbjct: 661 IIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMV 720
Query: 721 KKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL 780
KKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL
Sbjct: 721 KKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL 780
Query: 781 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 840
ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI
Sbjct: 781 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 840
Query: 841 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI 900
RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI
Sbjct: 841 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI 900
Query: 901 RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGV 960
RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGV
Sbjct: 901 RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGV 960
Query: 961 APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIIL 1020
APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIIL
Sbjct: 961 APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIIL 1020
Query: 1021 NPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRL 1080
NPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRL
Sbjct: 1021 NPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRL 1080
Query: 1081 ANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1140
ANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM
Sbjct: 1081 ANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM 1140
Query: 1141 NLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEI 1200
NLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEI
Sbjct: 1141 NLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEI 1200
Query: 1201 IVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQS 1260
IVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQS
Sbjct: 1201 IVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQS 1260
Query: 1261 FISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKI 1320
FISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKI
Sbjct: 1261 FISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKI 1320
Query: 1321 TLETIKIIRGRN 1332
TLETIKIIRGRN
Sbjct: 1321 TLETIKIIRGRN 1332
>gb|AAL07336.1| rpoC2 [Glycine max] gi|41018056|sp|Q8HVY3|RPOC2_SOYBN DNA-directed
RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1384
Score = 2132 bits (5523), Expect = 0.0
Identities = 1086/1361 (79%), Positives = 1191/1361 (86%), Gaps = 38/1361 (2%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVIGGTAIKR+ISRLIDHFGMAYTSHILDQVKTLGFRQAT TSISLGID
Sbjct: 5 MAERANLVFHNKVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATDTSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS ILE+HHHYGNVHAVEKLRQSIEIWYATSEY RQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSFILEQHHHYGNVHAVEKLRQSIEIWYATSEYFRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT++GISVNT+N MM ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIQGISVNTQNGMMPERIW 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY GSRCI VRNQDIGIGLINRF QTQPI IRTPFTCRNTSWICRL
Sbjct: 245 IQTLIGRVLADDIYRGSRCIAVRNQDIGIGLINRFKTLQTQPISIRTPFTCRNTSWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYG+SP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE VR+P NGKI
Sbjct: 305 CYGQSPTHGHLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPYNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNE+ +PTRTRHGHPAFLCYIDLYVTIES DI+HNV IPPKSFLLVQN+QYVKSEQ+I
Sbjct: 365 QFNEDLVHPTRTRHGHPAFLCYIDLYVTIESGDIIHNVTIPPKSFLLVQNNQYVKSEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGTYT NLKEKVRKH++SD EGEMHWST++YH SEF YSNVHILPKTSHLWILSG
Sbjct: 425 AEIRAGTYTFNLKEKVRKHVYSDLEGEMHWSTDVYHASEFRYSNVHILPKTSHLWILSGK 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
S++S +VS S+ KDQDQM+ H L T +R+ N L S +VR
Sbjct: 485 SYRSGSVSFSIRKDQDQMNIHYLSTGERDFCNLLASKKKVRHKLFRFNPSDKKERRISDY 544
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVE 573
+ DHCHF HPTI DT++LLAK+RRNR IIPF F+SI+ER+ ELM IS+E
Sbjct: 545 SIFNQIISIDHCHFTHPTIFHDTTDLLAKRRRNRLIIPFQFQSIQERDKELMLASSISIE 604
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKED-LIEYRGIREFKPKYQ 632
IPI+GI +NSILAYFDDPQYRTQSSGI KY+TIGI+SIF+KED LIEY+G++EFK KYQ
Sbjct: 605 IPINGIFRRNSILAYFDDPQYRTQSSGITKYRTIGINSIFKKEDFLIEYQGVKEFKTKYQ 664
Query: 633 IKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELK 692
IKVD+FFFIP+EVHIL ESSSIMVRNNSI+ V+T ITLN +SRV GLVR+EK KKKIELK
Sbjct: 665 IKVDQFFFIPEEVHILPESSSIMVRNNSIVEVDTLITLNIRSRVRGLVRLEKKKKKIELK 724
Query: 693 IFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVR 752
IFSGDI+FPGE+DKIS+HSA+LIPP V KKNSKE K K NW Y+QWIT TKKKYFVLVR
Sbjct: 725 IFSGDIYFPGEMDKISRHSAVLIPPRTV-KKNSKEKKMK-NWIYVQWITITKKKYFVLVR 782
Query: 753 PVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLV 812
PVILY+IAD INLVKLFPQD+F+E DNLELKV+N+IL GNGKSIRGI DTSIQLVRTCLV
Sbjct: 783 PVILYEIADRINLVKLFPQDMFQERDNLELKVINYILSGNGKSIRGISDTSIQLVRTCLV 842
Query: 813 LNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNE 872
LNW++D+K SSIE A ASFVE+S GL+RYFLRIDLVKSHISYI KRNDPSS
Sbjct: 843 LNWDQDKKFSSIENAHASFVEISIKGLVRYFLRIDLVKSHISYISKRNDPSSE---KKEG 899
Query: 873 SDRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNN 929
SD N+NPF+SIY K +Q+S +Q GT+R LL NKE + F+ILSSSNCFQ+ FN+
Sbjct: 900 SDHTNMNPFYSIYIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFQIRSFNH 959
Query: 930 VKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLN 989
KY+NGIKE INQ +R+ IPIK SLGPLG+APQ+A+ F FY LITHN+IS I KN QL+
Sbjct: 960 GKYYNGIKEGINQIQRDAMIPIKNSLGPLGIAPQVAH-FDFYRLITHNQISII-KNGQLD 1017
Query: 990 KFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFIC 1049
K KETFQV +YY +DENERIYKPDL +NIILNPF+LNW F+H NYCEKTF I+SLGQFIC
Sbjct: 1018 KLKETFQVFQYYFLDENERIYKPDLCSNIILNPFYLNWHFLHHNYCEKTFTIMSLGQFIC 1077
Query: 1050 ENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTF 1109
ENVCIVQTKN P+LKSGQ++TVQMD VGIR ANPYLATPGAT+HGHYGE+L EGDILVTF
Sbjct: 1078 ENVCIVQTKNAPHLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTF 1137
Query: 1110 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAEL 1169
IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR+D WN RIT ILGIPW FLIGAEL
Sbjct: 1138 IYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAEL 1197
Query: 1170 TIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLL 1229
TIAQSRISLVNKIQ+VYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLL
Sbjct: 1198 TIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLL 1257
Query: 1230 RAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 1289
RA+R GR+LEE+ICYR LLLGITKTSLNTQSFISEASFQETARVL+KAALRGRIDWLKGL
Sbjct: 1258 RAERAGRSLEEAICYRVLLLGITKTSLNTQSFISEASFQETARVLSKAALRGRIDWLKGL 1317
Query: 1290 KENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRG 1330
KEN+VLGG+IPVGTGFK+I +RS RQ K+T + + G
Sbjct: 1318 KENVVLGGMIPVGTGFKRIMNRSKQRQYNKMTRKKKNLFEG 1358
>emb|CAJ00748.1| RNA polymerase beta'' chain [Cucumis sativus]
Length = 1394
Score = 2020 bits (5233), Expect = 0.0
Identities = 1046/1358 (77%), Positives = 1151/1358 (84%), Gaps = 45/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERA+LVFHNKVI GTAIKR+ISRLIDHFGMAYTSHILDQ+KTLGF+QAT TSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGI V+ NRM+ ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY+G RCI VRNQDIGIGLINRFI FQTQPI IRTPFTCR+TSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE++R+PSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLCYIDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+I
Sbjct: 365 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGTYTLNLKE+VRKHI+SDSEGEMHWST++YH EF YSNVH+LPKTSHLWILSG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
S V SL KDQDQ++ HSL +R S+ V+N++V
Sbjct: 485 SCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDY 544
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVE 573
LC + +P I S+LLAK+RRN FII F S++ER EL P IS+E
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQ--FESLQEREKELRPPSGISIE 602
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKY-- 631
IPI+GI +NSILA+FDDPQYR SSGI KY TIG+HSI +KEDLIEYRG+++FKPKY
Sbjct: 603 IPINGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQM 662
Query: 632 QIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIEL 691
Q+KVDRFFFIP+EVHIL ESSSIMVRNNSIIGV T +TL+ +SRVGGLVRVEK KK+IEL
Sbjct: 663 QMKVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIEL 722
Query: 692 KIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLV 751
KIFSGDIHFPGE+DKIS+H+ ILIPPE V KKNSK+SKK NW Y+QWIT TKKKYFV V
Sbjct: 723 KIFSGDIHFPGEMDKISRHNGILIPPERV-KKNSKKSKKSKNWIYVQWITPTKKKYFVFV 781
Query: 752 RPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCL 811
RPVI+Y++AD INLVKLFPQDL +E DNLEL+V N+ILYGNGK IRGI TSIQLVRTCL
Sbjct: 782 RPVIIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCL 841
Query: 812 VLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYN 871
+LNW+ D+KSSSIE+A ASFVEVSTNGL+R FLRIDL KS +YIRKR DPS SGLI N
Sbjct: 842 LLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNN 901
Query: 872 ESDRININPFFSIY-KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
ESDR NINPFFSIY K + QS SQ GTIR LLNRNKE +S IILS+SNC Q+ FN+V
Sbjct: 902 ESDRTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDV 961
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
K +N IKE K++ I I+ SLGPLG APQI NF+SFY+LITHN I S+ K LQL+
Sbjct: 962 KDYNVIKE---SSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPI-SLTKYLQLDN 1017
Query: 991 FKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQ 1046
K+ FQV+KYYLMDEN I D NI+ N F+LNW F+H NYCE+T ISLGQ
Sbjct: 1018 LKQIFQVLKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQ 1077
Query: 1047 FICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDIL 1106
F ENVCI KN P+LKSGQ+I VQ+D + IR A PYLAT GAT+H HYGE+LYEGD L
Sbjct: 1078 FFFENVCI--AKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTL 1135
Query: 1107 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIG 1166
VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISM+LEKRI+ WNERIT ILGIPW FLIG
Sbjct: 1136 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG 1195
Query: 1167 AELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1226
AELTI QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI
Sbjct: 1196 AELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1255
Query: 1227 GLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1286
GLLRA+RTGRALEE+ICYR +LLGITK SLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1256 GLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWL 1315
Query: 1287 KGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLET 1324
+GLKEN+VLGG+IPVGTGF+++ RS RQ I LET
Sbjct: 1316 RGLKENVVLGGMIPVGTGFRELAHRS--RQHNNIPLET 1351
>emb|CAA77410.1| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|11465944|ref|NP_054486.1| RNA polymerase beta'' chain
[Nicotiana tabacum]
Length = 1392
Score = 2009 bits (5204), Expect = 0.0
Identities = 1030/1358 (75%), Positives = 1148/1358 (83%), Gaps = 43/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLIDHFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISV+ RN MM ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIF 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+I
Sbjct: 365 KFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAG TLN KEKVRKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G
Sbjct: 425 AEIRAGISTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGR 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
+S V LS+ KDQDQM+ H L +R TSN V+N+Q R
Sbjct: 485 PCRSSLVYLSIHKDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDY 544
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVE 573
+C + ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+E
Sbjct: 545 SDLNRIICAGQYNLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIE 602
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI 633
IP++GI +NSILAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+
Sbjct: 603 IPVNGIFRRNSILAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQM 662
Query: 634 KVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKI 693
KVDRFFFIP+EVHIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKI
Sbjct: 663 KVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKI 722
Query: 694 FSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRP 753
FSGDIHFPGE DKIS+H+ +LIPP K+NSKESKK NW Y+Q IT +KKK+FVLVRP
Sbjct: 723 FSGDIHFPGETDKISRHTGVLIPPG-TGKRNSKESKKVKNWIYVQRITPSKKKFFVLVRP 781
Query: 754 VILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVL 813
V+ Y+I D INL LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVL
Sbjct: 782 VVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVL 841
Query: 814 NWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNES 873
NWN+D+KSSS EEA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N S
Sbjct: 842 NWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGS 901
Query: 874 DRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
D NINPF SIY K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +V
Sbjct: 902 DCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDV 961
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
KYH+ IK+ I K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+
Sbjct: 962 KYHSVIKKSI---KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDN 1017
Query: 991 FKETFQVI--KYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFI 1048
K+TFQVI KYYLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFI
Sbjct: 1018 LKQTFQVIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFI 1077
Query: 1049 CENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVT 1108
CENVCI KNGP LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVT
Sbjct: 1078 CENVCI--AKNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVT 1135
Query: 1109 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAE 1168
FIYEKSRSGDITQGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW FLIGAE
Sbjct: 1136 FIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAE 1195
Query: 1169 LTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1228
LTIAQSRISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFSPGELIGL
Sbjct: 1196 LTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1255
Query: 1229 LRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1288
LRA+R GRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1256 LRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1315
Query: 1289 LKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
LKEN+VLGG+IPVGTGFK G ++Q I LET K
Sbjct: 1316 LKENVVLGGVIPVGTGFK--GLVHPSKQHNNIPLETKK 1351
>sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1388
Score = 2009 bits (5204), Expect = 0.0
Identities = 1030/1358 (75%), Positives = 1148/1358 (83%), Gaps = 43/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLIDHFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 1 MAERANLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISV+ RN MM ERI
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIF 240
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRL
Sbjct: 241 IQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 300
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 360
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+I
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVI 420
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAG TLN KEKVRKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G
Sbjct: 421 AEIRAGISTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGR 480
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
+S V LS+ KDQDQM+ H L +R TSN V+N+Q R
Sbjct: 481 PCRSSLVYLSIHKDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDY 540
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVE 573
+C + ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+E
Sbjct: 541 SDLNRIICAGQYNLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIE 598
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI 633
IP++GI +NSILAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+
Sbjct: 599 IPVNGIFRRNSILAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQM 658
Query: 634 KVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKI 693
KVDRFFFIP+EVHIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKI
Sbjct: 659 KVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKI 718
Query: 694 FSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRP 753
FSGDIHFPGE DKIS+H+ +LIPP K+NSKESKK NW Y+Q IT +KKK+FVLVRP
Sbjct: 719 FSGDIHFPGETDKISRHTGVLIPPG-TGKRNSKESKKVKNWIYVQRITPSKKKFFVLVRP 777
Query: 754 VILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVL 813
V+ Y+I D INL LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVL
Sbjct: 778 VVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVL 837
Query: 814 NWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNES 873
NWN+D+KSSS EEA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N S
Sbjct: 838 NWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGS 897
Query: 874 DRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
D NINPF SIY K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +V
Sbjct: 898 DCTNINPFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDV 957
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
KYH+ IK+ I K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+
Sbjct: 958 KYHSVIKKSI---KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDN 1013
Query: 991 FKETFQVI--KYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFI 1048
K+TFQVI KYYLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFI
Sbjct: 1014 LKQTFQVIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFI 1073
Query: 1049 CENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVT 1108
CENVCI KNGP LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVT
Sbjct: 1074 CENVCI--AKNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVT 1131
Query: 1109 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAE 1168
FIYEKSRSGDITQGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW FLIGAE
Sbjct: 1132 FIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAE 1191
Query: 1169 LTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1228
LTIAQSRISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFSPGELIGL
Sbjct: 1192 LTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1251
Query: 1229 LRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1288
LRA+R GRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1252 LRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1311
Query: 1289 LKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
LKEN+VLGG+IPVGTGFK G ++Q I LET K
Sbjct: 1312 LKENVVLGGVIPVGTGFK--GLVHPSKQHNNIPLETKK 1347
>emb|CAC88034.1| RNA polymerase beta II subunit [Atropa belladonna]
gi|28261707|ref|NP_783222.1| RNA polymerase beta'' chain
[Atropa belladonna] gi|41018087|sp|Q8S8Y1|RPOC2_ATRBE
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1389
Score = 1989 bits (5154), Expect = 0.0
Identities = 1029/1358 (75%), Positives = 1140/1358 (83%), Gaps = 46/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLI+HFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKAIDGTAMKRLISRLIEHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISV+ RN MM ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIF 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
QTLIGRVLADDIY+G RCI RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRL
Sbjct: 245 SQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+I
Sbjct: 365 KFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAG TLN KEKVRKHI+SDS+GEMHWST++YH EF Y NVH+LPKTSHLWIL G
Sbjct: 425 AEIRAGISTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGG 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
KS V LS+ KDQDQM+ HSL +R TSN V+N+Q R
Sbjct: 485 PCKSSLVYLSIHKDQDQMNAHSLSGKQRYTSNLSVTNDQARQKLFSSGFSGKKEDRIPDY 544
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVE 573
+C + ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+E
Sbjct: 545 SDLNRIICTGQYNLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIE 602
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI 633
IP++GI +NSILAYFDDP+YR +SSGI KY TI HS+ +KEDLIEYRG++EF+PKYQ+
Sbjct: 603 IPVNGIFRRNSILAYFDDPRYRRKSSGIIKYGTIETHSVIKKEDLIEYRGVKEFRPKYQM 662
Query: 634 KVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKI 693
KVDRFFFIP+EVHIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKI
Sbjct: 663 KVDRFFFIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKI 722
Query: 694 FSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRP 753
FSGDIHFPGE DKIS+H+ +LIPP K NSKESKK W Y+Q IT +KKK+FVLVRP
Sbjct: 723 FSGDIHFPGETDKISRHTGLLIPPG-TGKINSKESKKVKKWIYVQRITPSKKKFFVLVRP 781
Query: 754 VILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVL 813
V+ Y+I D IN LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVL
Sbjct: 782 VVTYEITDGINFETLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVL 841
Query: 814 NWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNES 873
NWN+D+KSSS EEA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N S
Sbjct: 842 NWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGS 901
Query: 874 DRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
D NINPF SIY K IQQSL+Q GTI LLNRNKE +S IILSS+NC +MG +
Sbjct: 902 DCTNINPFSSIYSYSKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSSANCSRMG---TL 958
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
KYH+ IK+ I K++ IPI+ SLGPLG I NF+S Y LITHN+I + LQL+
Sbjct: 959 KYHSVIKDSI---KKDPLIPIRNSLGPLGTCLPIENFYSSYRLITHNQI-LVTNYLQLDN 1014
Query: 991 FKETFQVI--KYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFI 1048
K+TFQVI KYYLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFI
Sbjct: 1015 LKQTFQVIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFI 1074
Query: 1049 CENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVT 1108
CENVCI KNGP LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVT
Sbjct: 1075 CENVCI--AKNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVT 1132
Query: 1109 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAE 1168
FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR++ WN+ IT ILGIPW FLIGAE
Sbjct: 1133 FIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNKCITRILGIPWGFLIGAE 1192
Query: 1169 LTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1228
LTIAQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL
Sbjct: 1193 LTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 1252
Query: 1229 LRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1288
LRA+R GRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKG
Sbjct: 1253 LRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 1312
Query: 1289 LKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
LKEN+VLGG+IPVGTGFK G ++Q I LET K
Sbjct: 1313 LKENVVLGGVIPVGTGFK--GLVHPSKQHNNIPLETKK 1348
>ref|YP_086956.1| RNA polymerase beta II subunit [Panax ginseng]
gi|51235303|gb|AAT98499.1| RNA polymerase beta II subunit
[Panax ginseng]
Length = 1387
Score = 1986 bits (5144), Expect = 0.0
Identities = 1025/1351 (75%), Positives = 1133/1351 (82%), Gaps = 38/1351 (2%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVI GTA+KR+ISRLI+HFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKVIDGTAMKRLISRLIEHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSK WLVQDAEQQSLILEK HHYGNVHAVEKLRQSIEIWYATSE+LRQEM PNF
Sbjct: 65 DLLTIPSKRWLVQDAEQQSLILEKQHHYGNVHAVEKLRQSIEIWYATSEFLRQEMKPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLM+DPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRR DCGTVRGISV+ RN MM ER+
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRKDCGTVRGISVSPRNGMMPERVF 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY+G RCI RNQDIG GL+NRFI F+ QPI+IRTPFTCR+TSWICRL
Sbjct: 245 IQTLIGRVLADDIYLGPRCIATRNQDIGSGLVNRFITFRAQPIYIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+L ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 305 CYGRSPTHGDLAELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLC IDLYVTIES DI+HNV IPPKSFLLVQNDQYV+SEQ+I
Sbjct: 365 KFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDIIHNVNIPPKSFLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGT TLN KEKVRKHI+SDSEGEMHW+T++YH F Y NVH+LPKTSHLWIL G
Sbjct: 425 AEIRAGTSTLNFKEKVRKHIYSDSEGEMHWNTDVYHAPAFTYGNVHLLPKTSHLWILLGE 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR---LCPD------------ 525
+SD V+LS+ KDQDQM+ HSL +R SN V+N+Q R D
Sbjct: 485 PCRSDLVALSIHKDQDQMNAHSLSVKRRYISNLSVTNDQARHKFFSSDFSGKKEDRITDY 544
Query: 526 -------HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPI 576
HC+ + I S+LLAK+RRNRFIIP +SI+E NELMP IS+EIPI
Sbjct: 545 SELNRIGHCNLPYLAILHANSDLLAKRRRNRFIIP--LQSIQEHENELMPSSGISIEIPI 602
Query: 577 DGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVD 636
GI K SI+AYFDDP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVD
Sbjct: 603 HGIFRKKSIIAYFDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVD 662
Query: 637 RFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSG 696
RFFFIP+EVHIL SSSIMVRNNSIIGV+T ITL +SRVGGLVRVE+ KK+IELKIFSG
Sbjct: 663 RFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLTTRSRVGGLVRVERKKKRIELKIFSG 722
Query: 697 DIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVIL 756
DIHFPGE DKIS+HS +LIPP K NSKESKK NW Y+Q IT TKKKYFVLVRPV+
Sbjct: 723 DIHFPGETDKISRHSGVLIPPG-TGKTNSKESKKWKNWIYVQRITPTKKKYFVLVRPVVT 781
Query: 757 YDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWN 816
Y+I D INL LF DL +E DN++L+V+N+ILYG GK IRG DTSIQLVRTCLVLNW
Sbjct: 782 YEITDGINLATLFFPDLLQERDNVQLRVVNYILYGTGKPIRGFYDTSIQLVRTCLVLNWV 841
Query: 817 EDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRI 876
+D+KSSSIEEA SFVE+ N LIR FL+IDL KS I Y KR DPS SGLIS N SDR
Sbjct: 842 QDKKSSSIEEARTSFVEIRINSLIRDFLKIDLAKSPILYTGKRKDPSGSGLISENGSDRT 901
Query: 877 NINPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYH 933
NINPF S + K I++SL+Q GTI LLNRNKE +S IILSSSNCF+MGPFN+VKYH
Sbjct: 902 NINPFSSSFFYSKARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKYH 961
Query: 934 NGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKE 993
N IKE I +++ I I+ SLGPLG A QIANF+SF HLIT+N+I + LQL+ K+
Sbjct: 962 NVIKESI---QKDPLIQIRNSLGPLGTALQIANFYSFSHLITYNQI-LVTNYLQLDNLKQ 1017
Query: 994 TFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVC 1053
+FQV+KYYLMDEN +IY PD NIILNPF+LNW F+H NYCE+T +SLGQFICENVC
Sbjct: 1018 SFQVLKYYLMDENGKIYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVC 1077
Query: 1054 IVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEK 1113
I KNGP+LK GQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LYEGD LVTFIYEK
Sbjct: 1078 I--AKNGPHLKPGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEK 1135
Query: 1114 SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQ 1173
SRSGDITQGLPKVEQVLEVRSIDSISMNLEKR++ WNE IT LGIPW FLIGAELTI Q
Sbjct: 1136 SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNECITRNLGIPWGFLIGAELTIVQ 1195
Query: 1174 SRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQR 1233
SRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF PGE IGLLRA+R
Sbjct: 1196 SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEFIGLLRAER 1255
Query: 1234 TGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENL 1293
GRALEE+ICY+ +LLGITK SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+
Sbjct: 1256 MGRALEEAICYQAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 1315
Query: 1294 VLGGIIPVGTGFKKIGDRSSARQDTKITLET 1324
VLGG+IPVGTGFK G +RQ I LET
Sbjct: 1316 VLGGMIPVGTGFK--GLVPPSRQHKNIPLET 1344
>emb|CAB88715.1| RNA polymerase beta'' subunit [Spinacia oleracea]
gi|11497514|ref|NP_054922.1| RNA polymerase beta'' chain
[Spinacia oleracea] gi|81503|pir||A29959 DNA-directed RNA
polymerase (EC 2.7.7.6) beta'' chain - spinach
chloroplast gi|133448|sp|P11704|RPOC2_SPIOL DNA-directed
RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1361
Score = 1963 bits (5085), Expect = 0.0
Identities = 1010/1357 (74%), Positives = 1130/1357 (82%), Gaps = 47/1357 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLIDHFGMAYTSHILDQ+KTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWY+TSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYSTSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP+NPVHIMSFSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPYNPVHIMSFSGARGNVSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRR DCGT+RGISV+ +N M ERIL
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRRDCGTIRGISVSPQNSTMPERIL 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY+GSRCI RNQDIG+GL+NRFI +TQ I IRTPFTCR+ SWICRL
Sbjct: 245 IQTLIGRVLADDIYMGSRCIATRNQDIGVGLVNRFITLRTQLISIRTPFTCRSASWICRL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 305 CYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNE+ +PTRTRHGHPAFLCYIDLYVTIES+DI+HNV IPPKSFLLVQNDQYV+SEQ+I
Sbjct: 365 QFNEDLVHPTRTRHGHPAFLCYIDLYVTIESDDILHNVNIPPKSFLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGT TLN KE+VRKHI+SDSEGEMHWST++YH EF Y NVH+LPKTSHLW+LSG
Sbjct: 425 AEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGK 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------RLCP--- 524
++S V SL KDQDQM+THSL + SN V+N+QV R+
Sbjct: 485 PYRSSVVPFSLSKDQDQMNTHSLSFEQIYISNPSVTNDQVKDKLSDSFSKKEDRITDYSE 544
Query: 525 ----DHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDG 578
HC+ ++P + D LLAKKRRNRFIIP F+ +ER ELM IS+EIPI+G
Sbjct: 545 LNRIGHCNLIYPAKNLD---LLAKKRRNRFIIP--FQGSQERKKELMSLSGISIEIPING 599
Query: 579 IIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRF 638
I KNSI AYFDDP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVDRF
Sbjct: 600 IFRKNSIFAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKEFRPKYQMKVDRF 659
Query: 639 FFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDI 698
FFIP+EVHIL+ SSSIMVRNNSIIGV+T ITLN +SR+GG+VRVE+ KKKIEL IFSGDI
Sbjct: 660 FFIPEEVHILAGSSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGDI 719
Query: 699 HFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYD 758
HFPGE DKIS+HS ILIPP +KNSK+SK W Y+Q IT TKKKYFVLVRPV+ Y+
Sbjct: 720 HFPGETDKISRHSGILIPP---SRKNSKDSKNLKKWIYVQRITPTKKKYFVLVRPVVPYE 776
Query: 759 IADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 818
I D INL LFPQDL +E DN++L+V+N+ILYGNGK RGI DTSIQLVRTCLVLNWN+D
Sbjct: 777 ITDGINLATLFPQDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLVRTCLVLNWNQD 836
Query: 819 EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 878
+K SSIEEA SFVEV TNG+I+ FL+++LVK ISYI KRNDPSS SD N+
Sbjct: 837 KKGSSIEEARGSFVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSSE---KKEGSDHTNM 893
Query: 879 NPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNG 935
NPF+SIY K +Q+S +Q GT+R LL NKE + F+ILSSSNCF++GPF VKY
Sbjct: 894 NPFYSIYIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRIGPFKGVKYPKE 953
Query: 936 IKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETF 995
+ K++ IPI+ S GPLG A QIANFFSFY+LITHN+I + LQL+ K+TF
Sbjct: 954 L------IKKDPLIPIRNSFGPLGTALQIANFFSFYYLITHNQI-LVTNYLQLDNLKQTF 1006
Query: 996 QVIK--YYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVC 1053
Q K YYLMDEN RIY PD +NII NPF LNW F+H ++CE+T I LGQF+CENVC
Sbjct: 1007 QPFKFQYYLMDENGRIYNPDPCSNIIFNPFKLNWYFLHYHFCEETSTKIDLGQFVCENVC 1066
Query: 1054 IVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEK 1113
I TK G +LKSGQV+ VQ D V IR A PYLATPGAT+HGHYGE++YEGD LVTFIYEK
Sbjct: 1067 I--TKKGTHLKSGQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEK 1124
Query: 1114 SRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQ 1173
SRSGDITQGLPKVEQVLEVRSIDSIS+NLEKRID+WNERIT ILG PW FLIGAELTIAQ
Sbjct: 1125 SRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQ 1184
Query: 1174 SRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQR 1233
SRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGL RA+R
Sbjct: 1185 SRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAER 1244
Query: 1234 TGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENL 1293
TGRALEE+ICYR LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+
Sbjct: 1245 TGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 1304
Query: 1294 VLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRG 1330
VLGG+IPVGTGFK SS +D + + + G
Sbjct: 1305 VLGGMIPVGTGFKGFVHHSSQHKDIPLKTKKQNLFEG 1341
>emb|CAD28711.1| RNA polymerase beta' subunit-2 [Calycanthus floridus var. glaucus]
gi|32480833|ref|NP_862744.1| RNA polymerase beta'' chain
[Calycanthus floridus var. glaucus]
gi|41017946|sp|Q7YJY0|RPOC2_CALFE DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1377
Score = 1954 bits (5061), Expect = 0.0
Identities = 1018/1355 (75%), Positives = 1137/1355 (83%), Gaps = 43/1355 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERA+LVFHNKVI G A+KR+ISRLIDHFGMAYTSHILDQVKTLGF+QATTTSISLGID
Sbjct: 5 MAERADLVFHNKVIDGAAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATTTSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEM+PNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMHPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP NPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPSNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN M+ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNG-MTERIW 243
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLA DIY+G RCI RNQDIGIGL+NRFI F+ QPI+IRTPF CR+TSWICRL
Sbjct: 244 IQTLIGRVLAYDIYMGPRCIAARNQDIGIGLVNRFITFRAQPIYIRTPFLCRSTSWICRL 303
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+P NGKI
Sbjct: 304 CYGRSPAHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPFNGKI 363
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNE+ +PTRTRHGHPAFLCY DLYVTIES+DI+HNV IP KSFLLVQNDQYV+SEQ+I
Sbjct: 364 QFNEDLVHPTRTRHGHPAFLCYTDLYVTIESHDILHNVNIPQKSFLLVQNDQYVESEQVI 423
Query: 421 AEIRAGTYTLNL--KEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
AEIRAGT T NL KEKVRKHI+SDSEGEMHWST++YH E+ Y NVH+LPKTSHLWILS
Sbjct: 424 AEIRAGTSTFNLKVKEKVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILS 483
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR--------------LCP 524
G +S V SL KDQDQM+ HSL +R S+ V+N +VR P
Sbjct: 484 GGLCRSSIVPFSLHKDQDQMNVHSLSVEQRYISDLSVTNVRVRHKLFSSDSSGKKGGRAP 543
Query: 525 D-----------HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DIS 571
D H +F++P I + S+LLAK+RRNRFIIP F+S +ER ELMP IS
Sbjct: 544 DYSGPDRIISNGHWNFIYPAILHENSDLLAKRRRNRFIIP--FQSDQEREKELMPRSGIS 601
Query: 572 VEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKY 631
+EIPI+GI+ +NSILAYFDDP+YR SSGI KY TIG+ SI +KEDLIEYR +EF+PKY
Sbjct: 602 IEIPINGILRRNSILAYFDDPRYRRSSSGITKYGTIGVDSIVKKEDLIEYRRAKEFRPKY 661
Query: 632 QIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIEL 691
Q+KVDRFFFIP+EVHIL SS +MVRNNSIIGVNT I LN +SRVGGLVRVE+ KK+IEL
Sbjct: 662 QMKVDRFFFIPEEVHILPASSPVMVRNNSIIGVNTRIALNTRSRVGGLVRVERKKKRIEL 721
Query: 692 KIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLV 751
KIFSGDIHFPGE DKIS+HS ILIPP KKN KESKK NW Y+Q IT TKKKYFVLV
Sbjct: 722 KIFSGDIHFPGETDKISRHSGILIPPG-TGKKNVKESKKWKNWIYVQRITPTKKKYFVLV 780
Query: 752 RPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCL 811
RPV+ Y+IAD INL LFPQD +E DN++L+V+N+ILYGNGK IRGI TS+QLVRTCL
Sbjct: 781 RPVVTYEIADGINLETLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTSLQLVRTCL 840
Query: 812 VLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYN 871
VLNW++D ++ SIEE ASFVEV NGLIR FL+IDLVKS I Y KRND +SSG I N
Sbjct: 841 VLNWDQD-RNGSIEEVHASFVEVRANGLIRDFLKIDLVKSPILYSGKRNDTTSSGFIPNN 899
Query: 872 ESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVK 931
SDR NINPF+ +K I QSL+Q GTIR LLNRNKE +SF+ILSSS+C ++G FN K
Sbjct: 900 GSDRTNINPFY--FKARI-QSLTQHQGTIRTLLNRNKECQSFLILSSSDCSRIGSFNGSK 956
Query: 932 YHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF 991
H KE I K + IPI+ SLGPLG P+IANF S Y+LITHN+I + K L L+
Sbjct: 957 SHKVTKESIT-IKEDPTIPIRNSLGPLGTVPKIANFDSSYYLITHNQI-LLNKYLSLDNL 1014
Query: 992 KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICEN 1051
K+TFQV+KYYLMDEN RIY PD +NII NPF LNW F+ +YCE+T II+ GQFICEN
Sbjct: 1015 KQTFQVLKYYLMDENGRIYNPDPRSNIIFNPFDLNWCFLPHDYCEETSTIINPGQFICEN 1074
Query: 1052 VCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIY 1111
VCI +K GP++KSGQ++ V++D + IR A P+LATPGAT+HGH GE+LYEGD LVTFIY
Sbjct: 1075 VCI--SKYGPHIKSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIY 1132
Query: 1112 EKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTI 1171
EKSRSGDITQGLPKVEQVLE RSIDSISMNLEKR++ WNERIT ILGIPW FLIGAELTI
Sbjct: 1133 EKSRSGDITQGLPKVEQVLEARSIDSISMNLEKRVEGWNERITKILGIPWGFLIGAELTI 1192
Query: 1172 AQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA 1231
AQSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITS+VLVSEDGMSNVFSPGELIGLLRA
Sbjct: 1193 AQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGELIGLLRA 1252
Query: 1232 QRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1291
+RTGRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE
Sbjct: 1253 ERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 1312
Query: 1292 NLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
N+VLGG++PVGTGFK + RS RQ I LE K
Sbjct: 1313 NVVLGGMMPVGTGFKGLVRRS--RQHNNIPLEIKK 1345
>dbj|BAD93459.1| RNA polymerase beta chain [Silene latifolia]
Length = 1373
Score = 1931 bits (5003), Expect = 0.0
Identities = 993/1353 (73%), Positives = 1118/1353 (82%), Gaps = 47/1353 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNK I GTA+KR+ISRLIDHFGMAYT+HILDQVKTLGF+QAT TSISLGID
Sbjct: 1 MAERANLVFHNKSIDGTAMKRLISRLIDHFGMAYTAHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWY+TSEYLRQEMNPNF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYSTSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP+NPVHIMSFSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPYNPVHIMSFSGARGNVSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN M ERI
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGRMPERIF 240
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
Q LIGRVLADDIY+GSRCI RNQDIG+GL+NRFI F+TQPI IRTPFTCR+TSWICRL
Sbjct: 241 TQILIGRVLADDIYLGSRCIATRNQDIGVGLVNRFITFRTQPIAIRTPFTCRSTSWICRL 300
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+P NGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKI 360
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE +PTRTRHGHPAFLCYIDLYVTIES D +HNV IPPKSFLLVQNDQYV+SEQ+I
Sbjct: 361 KFNEGLVHPTRTRHGHPAFLCYIDLYVTIESEDSLHNVNIPPKSFLLVQNDQYVESEQVI 420
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAG TLN KEKVRKHI+SDSEGEMHWST++YH EF Y NVH+LPK S LWILSG
Sbjct: 421 AEIRAGASTLNFKEKVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKASRLWILSGR 480
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR---LCP------------- 524
++S VS SL KDQDQ + +SL + ++ N ++N+QV+ L P
Sbjct: 481 PYRSSVVSFSLHKDQDQTTGNSL-SFEQKIYNLSMTNDQVQNKFLDPYIKKSSKKEDRSP 539
Query: 525 --------DHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP---DISVE 573
HC+ ++P S+LLAK+R+NR IIPF F+ +ER ELM IS+E
Sbjct: 540 NYSELNGMSHCNHIYPA---KNSDLLAKRRKNRLIIPFQFQLSQEREKELMSLSNGISIE 596
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI 633
IPI+GI +NSI AYF+DP+YRT+SSGI KY+TI HS +KEDLIEYRG++EF+PKYQ+
Sbjct: 597 IPINGIFRRNSIFAYFNDPRYRTKSSGITKYETIETHSSVKKEDLIEYRGVKEFRPKYQM 656
Query: 634 KVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKI 693
KVDRFFFI QEVHIL SSSIMVRNNSIIGV+T ITLN +SRVGG+VRVE+ KKKIELKI
Sbjct: 657 KVDRFFFISQEVHILPGSSSIMVRNNSIIGVDTQITLNTRSRVGGVVRVERKKKKIELKI 716
Query: 694 FSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRP 753
FSGDI+FPGE DKIS+HS ILIPP K N KESK NW Y+Q IT TKKKYFVLVRP
Sbjct: 717 FSGDIYFPGETDKISRHSGILIPP---GKTNYKESKNIKNWLYVQRITPTKKKYFVLVRP 773
Query: 754 VILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVL 813
V+ Y+I D INL L PQDL +E N++L+V N+ILYGNGK RGI DTSIQLVRTCLVL
Sbjct: 774 VVTYEITDGINLATLLPQDLLQERGNVQLRVFNYILYGNGKVTRGIYDTSIQLVRTCLVL 833
Query: 814 NWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNES 873
NWN+D+K SSIEEA ASFVEV TNG+IRYFL+I L+ +SYI KRN+P L S +
Sbjct: 834 NWNQDKKDSSIEEARASFVEVRTNGIIRYFLKIGLMNRALSYIGKRNNPP---LFSDDGL 890
Query: 874 DRININPFFSIY-KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKY 932
+ N+NPFFSIY K +QQ+ + GT+RML+ +NKE +SFIILSSSNCF+MGPF
Sbjct: 891 EYTNMNPFFSIYSKPKLQQAFNPNQGTVRMLVGKNKECQSFIILSSSNCFRMGPFT---- 946
Query: 933 HNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFK 992
NG+K K++ I IK S GPLG NFF FYHLITHN+I + LQL+ K
Sbjct: 947 LNGVKYPKESIKKDRLILIKNSFGPLGTVLNFVNFFFFYHLITHNQI-LVNNYLQLDNLK 1005
Query: 993 ETFQVIK--YYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICE 1050
+T QV+K YYLMDEN IY PD +NIILNPF+L+WDF+H N+C++T + LGQFICE
Sbjct: 1006 QTCQVLKYQYYLMDENGIIYNPDFCSNIILNPFNLHWDFLHYNFCDETSTKMRLGQFICE 1065
Query: 1051 NVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFI 1110
N+CI KNG +LK GQ+I VQ D V IR A P LATPGAT+HGHYGE++YEGD LVTFI
Sbjct: 1066 NICI--KKNGLHLKPGQIIIVQFDSVVIRSAKPCLATPGATVHGHYGEIIYEGDTLVTFI 1123
Query: 1111 YEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELT 1170
YEKSRSGDITQGLPKVEQVLEVRS++SISMNLEKRI+ WNERI ILGIPW FL+GAELT
Sbjct: 1124 YEKSRSGDITQGLPKVEQVLEVRSVESISMNLEKRINGWNERIKKILGIPWGFLVGAELT 1183
Query: 1171 IAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLR 1230
IAQSRISLVNKIQ+VYRSQGV IH+RHIEIIVRQITSKVLVSEDGMSN+F PGELIGL R
Sbjct: 1184 IAQSRISLVNKIQKVYRSQGVQIHDRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLFR 1243
Query: 1231 AQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1290
A+RTGRALEE+ICYRT+LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK
Sbjct: 1244 AERTGRALEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1303
Query: 1291 ENLVLGGIIPVGTGFKKIGDRSSARQDTKITLE 1323
EN+VLGG+IPVGTGFK RS+ + I L+
Sbjct: 1304 ENVVLGGMIPVGTGFKGFVHRSNQHKSISIPLK 1336
>dbj|BAA84375.1| RNA polymerase beta' subunit-2 [Arabidopsis thaliana]
gi|7525023|ref|NP_051049.1| RNA polymerase beta'' chain
[Arabidopsis thaliana] gi|6685905|sp|P56764|RPOC2_ARATH
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1376
Score = 1921 bits (4976), Expect = 0.0
Identities = 1001/1358 (73%), Positives = 1125/1358 (82%), Gaps = 53/1358 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVI GTAIKR+ISRLIDHFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 61 DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRN--RMMSER 238
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN RMMSER
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240
Query: 239 ILIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWIC 298
I IQTLIGRVLADDIYIGSRC+ RNQD+GIGL+NR I F TQ I IRTPFTCR+TSWIC
Sbjct: 241 IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC 300
Query: 299 RLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNG 358
RLCYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+P NG
Sbjct: 301 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 360
Query: 359 KIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQ 418
KIKFNE+ +PTRTRHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ
Sbjct: 361 KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 420
Query: 419 IIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
+IAEIR GTYT + KE+VRK+I+SDSEGEMHWST++ H EF YSNVH+LPKTSHLWILS
Sbjct: 421 VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 480
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQV------------------ 520
G S S + S+ KDQDQM+ L +++ S+ V+N+QV
Sbjct: 481 GGSCGSSLIRFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIY 540
Query: 521 -------RLCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--IS 571
L H + ++ I + S+LLAK+RRNRF+IP F+SI+E+ E +P IS
Sbjct: 541 DYSELNGNLGTSHYNLIYSAIFHENSDLLAKRRRNRFLIP--FQSIQEQEKEFIPQSGIS 598
Query: 572 VEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKY 631
VEIPI+GI +NSI A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++ K KY
Sbjct: 599 VEIPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKY 658
Query: 632 QIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIEL 691
++KVDRFFFIP+EVHIL ESS+IMV+N SIIGV+T +TLN +S+VGGL+RVEK KK+IEL
Sbjct: 659 EMKVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIEL 718
Query: 692 KIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLV 751
KIFSGDIHFP + DKIS+HS ILIPP KKNSKESKK NW Y+Q IT TKKK+FVLV
Sbjct: 719 KIFSGDIHFPDKTDKISRHSGILIPPGR-GKKNSKESKKFKNWIYVQRITPTKKKFFVLV 777
Query: 752 RPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCL 811
RPV Y+IADSINL LFPQDLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCL
Sbjct: 778 RPVATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCL 837
Query: 812 VLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYN 871
VLNW +K+SS+EE A FVEVST GLI+ F+RI LVKSHISYIRKRN+ SGLIS +
Sbjct: 838 VLNW---DKNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISAD 894
Query: 872 ESDRININPFFSIYKEN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNN 929
++NPF+SI ++ +QQSL Q HGTIRM LNRNKE++S +ILSSSNCF+MGPFN+
Sbjct: 895 -----HMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNH 949
Query: 930 VKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLN 989
VK+HN I + I K+N I IK S GPLG A I+NF+SF L+T+N+IS I K QL+
Sbjct: 950 VKHHNVINQSI---KKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLI-KYFQLD 1005
Query: 990 KFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLG 1045
K FQ I YL+DEN I D Y+N++LNPF LNW F+H NYCE+T IISLG
Sbjct: 1006 NLKYIFQKINSYLIDENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLG 1065
Query: 1046 QFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDI 1105
QF CENVCI K P+LKSGQV+ VQ D IR A PYLATPGA +HGHY E+LYEGD
Sbjct: 1066 QFFCENVCI--AKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDT 1123
Query: 1106 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLI 1165
LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+NLEKRI WN+ IT ILGIPW FLI
Sbjct: 1124 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLI 1183
Query: 1166 GAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1225
GAELTI QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF PGEL
Sbjct: 1184 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGEL 1243
Query: 1226 IGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDW 1285
IGLLRA+RTGRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1244 IGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 1303
Query: 1286 LKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLE 1323
LKGLKEN+VLGG+IP GTGF K G +RQ T I LE
Sbjct: 1304 LKGLKENVVLGGVIPAGTGFNK-GLVHCSRQHTNIILE 1340
>emb|CAB67153.1| RNA polymerase beta'' subunit [Oenothera elata subsp. hookeri]
gi|13518329|ref|NP_084688.1| RNA polymerase beta'' chain
[Oenothera elata subsp. hookeri]
gi|32699686|sp|Q9MTM3|RPOC2_OENHO DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1386
Score = 1884 bits (4880), Expect = 0.0
Identities = 975/1341 (72%), Positives = 1109/1341 (81%), Gaps = 48/1341 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
M E NLVFH KVI GTAIKR+ISRLIDHFGMA+TSHILDQVKTLGF+QAT TSISLGID
Sbjct: 1 MDEGVNLVFHKKVIDGTAIKRLISRLIDHFGMAHTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQD EQQSL LEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNF
Sbjct: 61 DLLTIPSKGWLVQDGEQQSLSLEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ R M ERI
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTLRGISVSPRR--MPERIF 238
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIYIGSRCI +RNQDIGIGL+NRFI F QPI IRTPFT R+ SWICRL
Sbjct: 239 IQTLIGRVLADDIYIGSRCIAIRNQDIGIGLVNRFITFGIQPISIRTPFTGRSPSWICRL 298
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 299 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 358
Query: 361 KFNENSA--YPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQ 418
KFN N A +P RTRHGHPA LC +DL VTIES DI+HN+ IPPKSFLLVQN+QYV+SEQ
Sbjct: 359 KFNFNEALVHPARTRHGHPALLCSMDLDVTIESEDILHNLTIPPKSFLLVQNNQYVESEQ 418
Query: 419 IIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
+IAEI AGT T + KE+VRKHI+SDSEGEMHWST++YH EF YSNVH+LPKTSHLWILS
Sbjct: 419 VIAEICAGTSTFHFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILS 478
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR----------------- 521
G S +S SL KDQDQM+ S +R S+ +N+Q+R
Sbjct: 479 GGSCRSRGAPFSLHKDQDQMNPRSTERERRYLSSLSANNDQIRYKFFSSSFSGKKKDDRE 538
Query: 522 ----------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--D 569
+C HC+ ++P+I + S+LLAK+RRNR +IP +S +ER EL+P
Sbjct: 539 SWFISEMNRIICTLHCNLIYPSILRENSDLLAKRRRNRLVIP--VQSSQEREKELIPHSG 596
Query: 570 ISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKP 629
IS+E+PI+GI K SILA+FDDP+YRT+SSGI +Y+T+G+HSI +KE L++YRGI EFKP
Sbjct: 597 ISIELPINGIFRKKSILAFFDDPRYRTKSSGITQYETMGMHSIVKKEGLVDYRGINEFKP 656
Query: 630 KYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKI 689
KYQ+ +DRFFFIP+EVHIL ESSSIMVRNNS+IGV+T I LN +SR GGLVRVE+ K+ I
Sbjct: 657 KYQMTIDRFFFIPEEVHILPESSSIMVRNNSLIGVDTRIALNTRSRAGGLVRVERKKRGI 716
Query: 690 ELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFV 749
L+IFSG IHFPGE DKIS S ILIPP K+NSKESKK N Y+Q IT TKKK+FV
Sbjct: 717 ALQIFSGTIHFPGETDKISWDSGILIPPG-TGKRNSKESKKWKNGIYVQRITPTKKKHFV 775
Query: 750 LVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRT 809
L RPV+ Y+IAD +NL +LFP DL +E DN++L+++N+I+YGNGK IR I DTSIQLVRT
Sbjct: 776 LFRPVVTYEIADGLNLARLFPPDLCQEKDNMQLQIVNYIVYGNGKPIREISDTSIQLVRT 835
Query: 810 CLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLIS 869
+LNW++D+KS+S E A ASFVEV GLIR FLRIDLVKS I RKRNDPS SGLIS
Sbjct: 836 WFILNWDQDKKSASAEAAHASFVEVRAKGLIRDFLRIDLVKSPILDPRKRNDPSGSGLIS 895
Query: 870 YNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNN 929
N SD NINPF+S K ++QS Q HGTIR LLN+NKE S +ILS+SN F+MGPFN+
Sbjct: 896 DNVSDHTNINPFYS--KPKMKQSPRQNHGTIRTLLNQNKECPSLMILSASNWFRMGPFND 953
Query: 930 VKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLN 989
VK N IKE I K++ I I+ S+GPLG A Q+ NF SFY+ ITHN++ + K LQ+
Sbjct: 954 VKSQNVIKESI---KKDAIIQIRNSIGPLGTALQVVNFDSFYYFITHNQV-LLTKYLQVE 1009
Query: 990 KFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFI-HPNY---CEKTFPIISLG 1045
K+TFQV++YYLMDE+ RIY PD +NI+LN F+L+W F+ H NY CE+ I+SLG
Sbjct: 1010 NLKQTFQVLQYYLMDESGRIYNPDPRSNIVLNSFNLSWYFLPHNNYENSCEEISTIVSLG 1069
Query: 1046 QFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDI 1105
QFICEN CI KNGP L+SGQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LY+GD
Sbjct: 1070 QFICENGCI--AKNGPYLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDT 1127
Query: 1106 LVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLI 1165
+VTF+YEKSRSGDITQGLPKVEQVLEVRS+DSIS+NLEKR++ WNE IT ILG PW FLI
Sbjct: 1128 VVTFLYEKSRSGDITQGLPKVEQVLEVRSVDSISVNLEKRVENWNEHITRILGFPWGFLI 1187
Query: 1166 GAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGEL 1225
GAELTI QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSEDGMSNVF P EL
Sbjct: 1188 GAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPREL 1247
Query: 1226 IGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDW 1285
IGLLRA+RTGRALEESICY+ LLGIT+TSLNTQSFISEASFQETARVLAKAALRGRIDW
Sbjct: 1248 IGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDW 1307
Query: 1286 LKGLKENLVLGGIIPVGTGFK 1306
LKGLKEN+V+GG+IPVGTGFK
Sbjct: 1308 LKGLKENVVIGGMIPVGTGFK 1328
>emb|CAB48415.2| RNA polymerase A beta prime prime subunit [Sinapis alba]
gi|12229937|sp|Q9THV5|RPOC2_SINAL DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1384
Score = 1880 bits (4871), Expect = 0.0
Identities = 986/1365 (72%), Positives = 1106/1365 (80%), Gaps = 46/1365 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVI GTAIKR+ISRLIDHFGMAYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 5 MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRN--RMMSER 238
SCYGARKGVVDTAVR SDAGYLTRRLVEVVQHIVVRRTDCGT+RGISV+ RN RMMSER
Sbjct: 185 SCYGARKGVVDTAVRQSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKSRMMSER 244
Query: 239 ILIQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWIC 298
I IQTLIGRVLADDIYIGSRC+ RNQD+GIGL+NRFI F TQPI IRTPFTCR+TSWIC
Sbjct: 245 IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRFITFGTQPISIRTPFTCRSTSWIC 304
Query: 299 RLCYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNG 358
RLCYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+P NG
Sbjct: 305 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 364
Query: 359 KIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQ 418
KIKFNE+ + TRTRHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ
Sbjct: 365 KIKFNEDLVHSTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 424
Query: 419 IIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILS 478
+IAEIR GTYT KE+VRK+I+SDSEG MHWST++ H EF YSNVH+LPKTSHLWILS
Sbjct: 425 VIAEIREGTYTFQFKERVRKYIYSDSEGGMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 484
Query: 479 GNSHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------LCPD 525
G S S + S+ KDQDQM+ L +++ S+ V+N+QV L P+
Sbjct: 485 GGSCGSSLILFSIHKDQDQMNIPFLSVERKSISSLSVNNDQVSQKFFSSDFSDKKILIPN 544
Query: 526 -----------HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISV 572
H +F++ I + S+LLAK+RRNRF+IPF +E+ E +P ISV
Sbjct: 545 YSELNGIVGTSHYNFIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEQEKEFIPHSGISV 604
Query: 573 EIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQ 632
EIPI+GI +NSI A+FDDP+YR +SSGI KY T+ SI QKED+IEYRG+++FK KY+
Sbjct: 605 EIPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYE 664
Query: 633 IKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELK 692
+KVDRFFFIP+EVHIL ESS+IMV N SIIGV+T ITLN +S+VGGL+RVE+ KK+IELK
Sbjct: 665 MKVDRFFFIPEEVHILPESSAIMVENYSIIGVDTRITLNIRSQVGGLIRVERKKKRIELK 724
Query: 693 IFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVR 752
IFSGDIHFP + DKIS+HS ILIPP K NSKESK NW Y+Q IT TKKK+FVLVR
Sbjct: 725 IFSGDIHFPDKTDKISRHSGILIPPGR-GKTNSKESKIVKNWIYVQRITPTKKKFFVLVR 783
Query: 753 PVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLV 812
PV Y+IADSINL LFP+DLF+E DN++L+V N+ILYGNGK RGI DTSIQLVRTCLV
Sbjct: 784 PVATYEIADSINLATLFPKDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLV 843
Query: 813 LNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNE 872
LNW++D K+SS+EE A FVEV+T GLIR F+RI LVKSHISYIRKRN+PSS E
Sbjct: 844 LNWDQDNKNSSLEEVRAFFVEVNTKGLIRDFIRIGLVKSHISYIRKRNNPSS----EKKE 899
Query: 873 SDRININPFFSIYKEN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNV 930
++NPF+SI + + QSL Q HGTIRM LNRN+ N +ILSSSNCF++GPFN+V
Sbjct: 900 GSDHSMNPFYSISPKAGILHQSLRQNHGTIRMFLNRNR-NPILLILSSSNCFRIGPFNHV 958
Query: 931 KYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNK 990
KYHN I + I + N+ IK P G A QI F F N+IS I K L L
Sbjct: 959 KYHNVINQSIKKKTSNY---IKNCRAPYGTAIQILIFIHFAFTKLINQISCI-KYLHLQT 1014
Query: 991 FKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQ 1046
F VI YL+DEN RI+ D Y+N++LNPF LNW F+H NYCE+T IISLGQ
Sbjct: 1015 SNVFFPVIHSYLIDENGRIFNLDPYSNLVLNPFKLNWYFLHQNYNNNYCEETSTIISLGQ 1074
Query: 1047 FICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDIL 1106
F CENVCI K P LKSGQV+ VQ D V IR A PYLATPGA +HGHY E+LYEGD L
Sbjct: 1075 FFCENVCI--AKKEPYLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTL 1132
Query: 1107 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIG 1166
VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS+NLEKRI WN IT ILGIPW FLIG
Sbjct: 1133 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCITRILGIPWGFLIG 1192
Query: 1167 AELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1226
AELTI QSRISLVNKI++VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELI
Sbjct: 1193 AELTIVQSRISLVNKIKQVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELI 1252
Query: 1227 GLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1286
GLLRA+RTGRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWL
Sbjct: 1253 GLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 1312
Query: 1287 KGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRGR 1331
KGLKEN+VLGG+IP G G ++IG S+A +IRGR
Sbjct: 1313 KGLKENVVLGGVIPPGPGSQRIGALSTATYQHSFGKNKNYLIRGR 1357
>gb|AAX58144.1| RNA polymerase beta II subunit [Lactuca sativa]
Length = 1386
Score = 1875 bits (4857), Expect = 0.0
Identities = 975/1340 (72%), Positives = 1103/1340 (81%), Gaps = 52/1340 (3%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAER VFHNKVI GTA+KR+ISR IDH+G+ YTSHILDQVKTLGFRQAT SISLGID
Sbjct: 5 MAERPTQVFHNKVIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSK WLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNF
Sbjct: 65 DLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTA+RTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISV+ RN MM++RI
Sbjct: 185 SCYGARKGVVDTAIRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMTDRIF 244
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIYIGSRCI RNQDIG+GL++RFI F+ QPI IRTPFTCR+TSWIC+L
Sbjct: 245 IQTLIGRVLADDIYIGSRCIATRNQDIGVGLVSRFITFRAQPISIRTPFTCRSTSWICQL 304
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP H +LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 305 CYGRSPAHDDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLC DLYVTIES DI+HNV IPPKSFLLVQNDQYV+SEQ+I
Sbjct: 365 KFNEDLVHPTRTRHGHPAFLCSRDLYVTIESEDIIHNVCIPPKSFLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRA T TLNLKEKVRKHI+SDSEGEMHW+T++YH EF Y N+H+LPKTSHLWIL G
Sbjct: 425 AEIRARTSTLNLKEKVRKHIYSDSEGEMHWNTDVYHAPEFTYGNIHLLPKTSHLWILLGE 484
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
+ S+ KDQDQM+ +SL R +N V+NNQVR
Sbjct: 485 PWRYSLGPCSIHKDQDQMNAYSLSVKPRYIANPSVTNNQVRHKFFSSYFSGKNQKGDRIP 544
Query: 522 --------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--IS 571
C DH + +P I S+LLAK+RRNRFIIP SI+E N+L+P IS
Sbjct: 545 DCSELNRMTCTDHSNLRYPAILDGNSDLLAKRRRNRFIIP--LESIQEGENQLIPSSGIS 602
Query: 572 VEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKY 631
+EIP +GI+ +NSILAYFDDP+Y +SSG+ KY+T ++SI +E+LIEYRG++ F PKY
Sbjct: 603 MEIPRNGILRRNSILAYFDDPRYIRKSSGLTKYETRELNSIVNEENLIEYRGVKVFWPKY 662
Query: 632 QIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIEL 691
Q +V+ FFFIP EVHILSESSSIMVR+NSIIG +T IT N++SRVGGLVRV+K +K++L
Sbjct: 663 QKEVNPFFFIPVEVHILSESSSIMVRHNSIIGADTQITFNRRSRVGGLVRVKKKAEKMKL 722
Query: 692 KIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTK--KKYFV 749
IFSGDIHFPG+ +K + LIPP K NSKE KK NW YIQ + ++ KKYFV
Sbjct: 723 IIFSGDIHFPGKTNKAFR----LIPPG-GGKPNSKEYKKLKNWLYIQRMKLSRYEKKYFV 777
Query: 750 LVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRT 809
LV+PV+ Y D INL +LFP DL +E DNL+L+V+N+ILY + I I DTSIQLVRT
Sbjct: 778 LVQPVVPYKKTDGINLGRLFPPDLLQESDNLQLRVVNYILYYD--PILEIWDTSIQLVRT 835
Query: 810 CLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLIS 869
LVLNW++D+K IE+A ASFVE+ TNGL+RYFLRIDL KS ISY KRND S SGLIS
Sbjct: 836 SLVLNWDQDKK---IEKACASFVEIRTNGLLRYFLRIDLAKSPISYTGKRNDLSGSGLIS 892
Query: 870 YNESDRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGP 926
N SDR N+NPF SIY K I++SL+ GTI LLNRNKE++S IILSSSNCF++GP
Sbjct: 893 ENGSDRANVNPFSSIYSYSKSRIKESLNPNQGTIHTLLNRNKESQSLIILSSSNCFRIGP 952
Query: 927 FNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNL 986
FN+VK N IKE I K+N IPI+ SLGPLG I NF F HLITHN+I + L
Sbjct: 953 FNDVKSPNVIKESI---KKNPLIPIRNSLGPLGTGFPIYNFDLFSHLITHNQI-LVTNYL 1008
Query: 987 QLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQ 1046
QL+ FK+ FQ++KYYL+DEN +IY P +NIILNPFHLNW F+H NYCE+T PI+SLGQ
Sbjct: 1009 QLDNFKQIFQILKYYLLDENGQIYNPYSCSNIILNPFHLNWYFLHYNYCEETSPIVSLGQ 1068
Query: 1047 FICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDIL 1106
F+CENVCI K GP+LKSGQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LYEGD L
Sbjct: 1069 FLCENVCI--AKKGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTL 1126
Query: 1107 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIG 1166
VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRI+ WN+ IT ILGIPW FLIG
Sbjct: 1127 VTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNKSITRILGIPWAFLIG 1186
Query: 1167 AELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELI 1226
AELTI QSRISLVNK+Q+VYRSQGV IHNRHIEIIVRQITSKVLVSED MSNVFSPGELI
Sbjct: 1187 AELTIVQSRISLVNKVQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDEMSNVFSPGELI 1246
Query: 1227 GLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWL 1286
GLLRA+R GRALEE+ICY+ +LLGIT+ S+NTQSFISEASFQETARVLAKAAL GRIDWL
Sbjct: 1247 GLLRAERMGRALEEAICYQAVLLGITRASMNTQSFISEASFQETARVLAKAALLGRIDWL 1306
Query: 1287 KGLKENLVLGGIIPVGTGFK 1306
KGLKEN+VLGG+IPVG+GFK
Sbjct: 1307 KGLKENVVLGGMIPVGSGFK 1326
>emb|CAF28583.1| RNA polymerase beta' subunit-2 [Nymphaea alba]
gi|50346772|ref|YP_053145.1| RNA polymerase beta'
subunit-2 [Nymphaea alba]
Length = 1401
Score = 1802 bits (4667), Expect = 0.0
Identities = 966/1363 (70%), Positives = 1086/1363 (78%), Gaps = 57/1363 (4%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERA+LVFHNKVI GTA+KR+ISRLIDHFG+AYTSHILDQVKTLGF+QAT TSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAMKRLISRLIDHFGIAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLT PSK WLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN NF
Sbjct: 65 DLLTTPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNLNFK 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP NPVHIMS+SGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY I
Sbjct: 125 MTDPSNPVHIMSYSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYTI 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCG+ RGISV+ R + M+ERI
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGSTRGISVSFR-KGMTERIF 243
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLA+D+Y+G RCI RNQDIGIGL+NRF+ + QPI+IRTPFTCR+ SWICRL
Sbjct: 244 IQTLIGRVLANDVYLGLRCIATRNQDIGIGLVNRFMTSRAQPIYIRTPFTCRSASWICRL 303
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYGRSP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE+VR+PSNGKI
Sbjct: 304 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 363
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
KFNE+ +PTRTRHGHPAFLCY+DLYVTIES DI+H+V IPPKSFLLVQNDQYV+SEQ+I
Sbjct: 364 KFNEDLVHPTRTRHGHPAFLCYVDLYVTIESQDIIHSVNIPPKSFLLVQNDQYVESEQVI 423
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGT T + KE+VRKHI+SDSEGEMHWST +YH E+ + NVH LPKTSHLWILSG
Sbjct: 424 AEIRAGTSTFHFKERVRKHIYSDSEGEMHWSTGVYHAPEYTHGNVHFLPKTSHLWILSGG 483
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQV--------------RLCPDH 526
KS V SL KDQDQM+ SL +R+ S+F V+NN+V R D+
Sbjct: 484 PCKSSLVPFSLHKDQDQMNVQSLSVQERSISDFSVNNNRVKHKLFGSDPLARKGRRISDY 543
Query: 527 C------------HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP----DI 570
F++P I + S LLAK+RRNRFIIPF + E EL P I
Sbjct: 544 AAGSERVISNGDGDFIYPAILRENSYLLAKRRRNRFIIPFQYDP--EWEKELTPHSSTSI 601
Query: 571 SVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPK 630
+VEIP +GI+ +NSILAYFDDP+YR SSGI KY I + SI +KE L+EYR +E +PK
Sbjct: 602 TVEIPANGILRRNSILAYFDDPRYRRSSSGITKYGIIEVDSIVKKEGLVEYRRPKESRPK 661
Query: 631 YQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIE 690
YQ+KVDRFF IP+EVHIL SSSIMVRNNSIIGV+T IT N +S++GGLVR+EK KKKIE
Sbjct: 662 YQMKVDRFFVIPEEVHILPGSSSIMVRNNSIIGVDTRITFNTRSQIGGLVRIEK-KKKIE 720
Query: 691 LKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKK----TNWRYIQWITTTKKK 746
LKIFSG IHFPGE DKIS+H ILIPP +KK K SK K NW Y+Q IT KKK
Sbjct: 721 LKIFSGGIHFPGETDKISRHIGILIPPG-ARKKMDKGSKGKNWEGNNWVYVQRITPIKKK 779
Query: 747 YFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQL 806
YFV VRPV+ Y+IAD INLV LFP D+ +E DNL L+V+N+ILYG+GK IRGI TSIQL
Sbjct: 780 YFVSVRPVVTYEIADGINLVTLFPGDMLQEKDNLRLQVVNYILYGDGKPIRGISHTSIQL 839
Query: 807 VRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSG 866
VRTCLVLNW++D+K SIE+ AS EV N LIRYF+RIDLVKS I Y KRND S S
Sbjct: 840 VRTCLVLNWDQDKK-GSIEKVQASSAEVRANDLIRYFIRIDLVKSPILYTGKRNDRSGS- 897
Query: 867 LISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGP 926
+I S N N F S K +SLSQ GT+R LNRNKE +S I+ SSSNC ++
Sbjct: 898 VIPDTGSYCANTNLFSSKVK---IKSLSQHQGTVRTFLNRNKEGQSLIVFSSSNCSRI-- 952
Query: 927 FNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNL 986
N KYHN KE I + K + IPI LGPLG P+I NF YH ITHN+I K +
Sbjct: 953 -NVSKYHNVTKESIKE-KEDTPIPILNLLGPLGTVPKIHNFSPSYHSITHNEILLNKYLI 1010
Query: 987 QLNKF-KETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCE--KTFPIIS 1043
NK K+TFQ++KYYL+DEN RI + ++II N F F+ +YCE T IIS
Sbjct: 1011 LDNKNPKQTFQLLKYYLVDENGRISNANPCSDIIFNLF--GSCFLPHDYCEGTSTTRIIS 1068
Query: 1044 LGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEG 1103
LGQFICENVC+ +K+G +KSGQVI V +D IR A PYLAT GAT+HG YGE+ YEG
Sbjct: 1069 LGQFICENVCL--SKHGTRIKSGQVIMVYLDSFIIRSAKPYLATRGATVHGDYGEIFYEG 1126
Query: 1104 DILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRF 1163
D LVTFIYEKSRSGDIT GLPKVEQVLEVRSIDSISMNLEKR++ WNE ITGILGIPW F
Sbjct: 1127 DTLVTFIYEKSRSGDITHGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITGILGIPWGF 1186
Query: 1164 LIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPG 1223
LIGAELTIAQSR+SLVNKIQ+VYRSQGV IHN+HIEIIVRQITSKVLVSEDGMSNVFSPG
Sbjct: 1187 LIGAELTIAQSRVSLVNKIQKVYRSQGVQIHNKHIEIIVRQITSKVLVSEDGMSNVFSPG 1246
Query: 1224 ELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1283
ELIGLLRA+R GRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRI
Sbjct: 1247 ELIGLLRAERAGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRI 1306
Query: 1284 DWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
DWLKGLKEN+VLGG+IPVGTGFK+ RS R+ I LE K
Sbjct: 1307 DWLKGLKENVVLGGMIPVGTGFKRFVHRS--REYNNIPLEIQK 1347
>emb|CAA27545.1| unnamed protein product [Pisum sativum] gi|81957|pir||S07137
DNA-directed RNA polymerase (EC 2.7.7.6) beta'-2 chain -
garden pea chloroplast (fragment)
gi|133447|sp|P12227|RPOC2_PEA DNA-directed RNA polymerase
beta'' chain (PEP) (Plastid-encoded RNA polymerase beta''
subunit) (RNA polymerase beta'' subunit)
Length = 1163
Score = 1734 bits (4492), Expect = 0.0
Identities = 890/1148 (77%), Positives = 981/1148 (84%), Gaps = 46/1148 (4%)
Query: 205 RLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERILIQTLIGRVLADDIYIGSRCIVVRN 264
RLVEVVQHIVVRRTDCGT+RGISVNTRN MM E ILIQTLIGRV+A++IYIGSRCIVVRN
Sbjct: 1 RLVEVVQHIVVRRTDCGTIRGISVNTRNGMMPEIILIQTLIGRVVAENIYIGSRCIVVRN 60
Query: 265 QDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLVELGEAVGIIAGQ 324
QDIGIGLINRFI FQTQPIFIRTPFTCRNTSWICRLCYGRSPIHG+LVELGEAVGIIAGQ
Sbjct: 61 QDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLVELGEAVGIIAGQ 120
Query: 325 SIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRTRHGHPAFLCYID 384
SIGEPGTQLTLRTFHTGGVFTGGTAEYVR+PSNGKIK NE+ +PTRTRHG+PAF+C ID
Sbjct: 121 SIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKLNEDLVHPTRTRHGYPAFICNID 180
Query: 385 LYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNLKEKVRKHIFSDS 444
LYVTIES+DI+HNVIIPPKSFLLVQNDQYVKSEQ+IAEIRAGTYT NLKE+VRKHI+SDS
Sbjct: 181 LYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNLKERVRKHIYSDS 240
Query: 445 EGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLLKDQDQMSTHSLP 504
EGEMHWST++YH SEF YSNVHILPKTSHLWILSG S +S+T+ L KDQDQ++ SL
Sbjct: 241 EGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGKSCRSNTIHFLLRKDQDQITMDSLS 300
Query: 505 TAKRNTSNFLVSNNQVR-------------------------LCPDHCHFMHPTISPDTS 539
K N SN L N+QV+ +C DH +P I DT
Sbjct: 301 NGKTNISNLLERNDQVKHKLFRFNTFGTKEKGISDYSIFNEIICTDH---SYPAIFHDTF 357
Query: 540 NLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSILAYFDDPQYRTQ 597
LAK+RRNRF+IPF F+SI+ER NE M +S+EIPI+GI H+NSI AYFDDPQYR
Sbjct: 358 YFLAKRRRNRFLIPFPFQSIQERKNERMSPSGVSIEIPINGIFHRNSIFAYFDDPQYRRH 417
Query: 598 SSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVR 657
SSGI KY+TIGIHSIFQKED IEYRGI+E KPK QI+VDRFFFIP+EVHIL +SSS+MVR
Sbjct: 418 SSGITKYRTIGIHSIFQKEDFIEYRGIKELKPKSQIQVDRFFFIPEEVHILPKSSSLMVR 477
Query: 658 NNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPP 717
NNS++G+ TPIT N +SRVGGLVR++K KKKIELKIFSG+IHFPGE+DKIS+HSAILIPP
Sbjct: 478 NNSLVGIGTPITFNIRSRVGGLVRLDKKKKKIELKIFSGNIHFPGEMDKISRHSAILIPP 537
Query: 718 EMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEW 777
VKKK +SKK NW Y+QWI TTKKKYFVLVRPVILY+I DS N VKLFPQDLF+E
Sbjct: 538 GTVKKKKCNKSKKIKNWIYVQWIATTKKKYFVLVRPVILYEIPDSNNFVKLFPQDLFQEK 597
Query: 778 DNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTN 837
DNLELKV+N+ILYGNGKSIRGI DT IQLVRTCLV NW++ + SSSIEEA ASF+EV TN
Sbjct: 598 DNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVFNWDDGKNSSSIEEAPASFIEVRTN 657
Query: 838 GLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY-KENIQQSLSQK 896
GLI YFLRIDLVKS+ SYIRKRN+PS GLI N+SDR INPFFSI+ K IQQSLSQ
Sbjct: 658 GLIEYFLRIDLVKSNTSYIRKRNEPSGFGLIGDNKSDR--INPFFSIHSKGKIQQSLSQN 715
Query: 897 HGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEE-INQFKRNHKIPIKISL 955
HGTIRMLLNRNKE RS+IILSSSNCFQM PFNN K HNGIK++ I N
Sbjct: 716 HGTIRMLLNRNKECRSWIILSSSNCFQMRPFNNEKSHNGIKKDPIISINNN--------- 766
Query: 956 GPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLY 1015
GPLG+A Q+ANF+S YHLITHN+IS I KNLQL+K E FQVIKYYLMDEN++I KPDLY
Sbjct: 767 GPLGIALQVANFYSLYHLITHNQISII-KNLQLDKLTEIFQVIKYYLMDENDKICKPDLY 825
Query: 1016 NNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPN--LKSGQVITVQM 1073
+NIILNPFHLNW F+H YCEKTF ISLGQFICEN+CI Q KN P+ LKSGQVI VQM
Sbjct: 826 SNIILNPFHLNWFFLHHFYCEKTFTRISLGQFICENICIAQMKNRPHLKLKSGQVIIVQM 885
Query: 1074 DFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVR 1133
D V IR ANPYLATPGATIHGHYGE+L +GDILVTFIYEKSRSGDITQGLPKVEQ+LE+R
Sbjct: 886 DSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDITQGLPKVEQILEIR 945
Query: 1134 SIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHI 1193
SIDSISMNLEKRIDAWNE IT I+GIPW FLIGAELTIAQSRISLVNKIQ+VYRSQGVHI
Sbjct: 946 SIDSISMNLEKRIDAWNECITKIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHI 1005
Query: 1194 HNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITK 1253
HNRHIEIIVRQITSKVLVSEDGMSN+F PGELIGLLRA+RTGRALEE+ICYR LLLG+TK
Sbjct: 1006 HNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERTGRALEEAICYRALLLGVTK 1065
Query: 1254 TSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSS 1313
TSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+VLGG+IPVGTGFK+I RS
Sbjct: 1066 TSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRIMHRSR 1125
Query: 1314 ARQDTKIT 1321
+RQ KIT
Sbjct: 1126 SRQHNKIT 1133
>emb|CAA28063.1| rpoC2 [Marchantia polymorpha] gi|66985|pir||RNLVC2 DNA-directed RNA
polymerase (EC 2.7.7.6) beta'-2 chain - liverwort
(Marchantia polymorpha) chloroplast
gi|11466681|ref|NP_039277.1| RNA polymerase beta'' chain
[Marchantia polymorpha] gi|133444|sp|P06274|RPOC2_MARPO
DNA-directed RNA polymerase beta'' chain (PEP)
(Plastid-encoded RNA polymerase beta'' subunit) (RNA
polymerase beta'' subunit)
Length = 1386
Score = 1255 bits (3248), Expect = 0.0
Identities = 694/1356 (51%), Positives = 929/1356 (68%), Gaps = 80/1356 (5%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAE NL+F+NKV+ TAIK++ISRLI HFG+ YT+HILDQ+KTLGF+QAT +ISLGID
Sbjct: 1 MAEPVNLIFYNKVMDRTAIKQLISRLIAHFGITYTTHILDQLKTLGFQQATFGAISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLT PSK WL++DAEQ + EKHH+YG++HAVEKLRQ IE WYATSEYL+QEMNPNF
Sbjct: 61 DLLTAPSKSWLIEDAEQYGNLSEKHHNYGSLHAVEKLRQLIETWYATSEYLKQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
+TDP NPVH+MSFSGARG+ SQVHQLVGMRGLMSDPQGQ+IDLPIQSN REGLSLTEYII
Sbjct: 121 ITDPLNPVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR+ DCGT+ GI+VN N +
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTLYGINVN--NLSEKKNNF 238
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
Q LIGRV+A++IYI RCI RNQDIG L NR I +T+ IF+R+P TC++ +WIC+L
Sbjct: 239 QQKLIGRVIAENIYIDHRCIAPRNQDIGALLANRLITLKTKQIFLRSPLTCKSMNWICQL 298
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYG S HGNL+E+GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE+VR+P NG I
Sbjct: 299 CYGWSLSHGNLIEMGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFNGII 358
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNEN YPTRTRHGHPA++C+ +L++ I+S + +HN+ IPPKS LLVQN+QYV+S+Q+I
Sbjct: 359 EFNENFVYPTRTRHGHPAWMCHTNLFLVIKSKNKVHNLTIPPKSLLLVQNNQYVESKQVI 418
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRA T KEKV+K+I+S+ EGEMHWST + H SE+ +SN+H++ KT H+WILSGN
Sbjct: 419 AEIRAKTSP--FKEKVQKYIYSNLEGEMHWSTKVRHASEYIHSNIHLILKTCHIWILSGN 476
Query: 481 SH-KSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCH-------FMHP 532
H K++ +S+ K+QD++ T ++N +F+ + Q+ L H + F+
Sbjct: 477 FHKKNNDLSVLFYKNQDKIDFPISLTKEKNEFSFVKNKTQLNLFLFHFYLYKKNKIFIKS 536
Query: 533 TISPDTSNLLAKKRRNRFIIP---------FLFRSIRERNNELMPDISVEIPIDGIIHKN 583
++ + N + + FI+ F F +N L + ++I +G++ N
Sbjct: 537 QLTNNILNKINNSKNYNFILQEYNIKKKKNFYFL----KNKNLTCPLFLKIKKNGVLKNN 592
Query: 584 SILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQ-IKVDRFFFIP 642
I A DDP Y+ ++SGI KY I + I Q + E + F+P+Y IK FFFIP
Sbjct: 593 EIFAILDDPSYKVKNSGILKYGNIKVDLINQNTN-FEDPQTKLFRPRYSIIKEGNFFFIP 651
Query: 643 QEVHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKKIELKIFSGDIHF 700
+EV++L++S SS+ ++NN I T IT N +S GLV+++ K ELKI G I++
Sbjct: 652 EEVYVLTQSLSSVFIKNNKFIQAGTLITSNIRSNTNGLVKIQKKGNNNYELKILPGTIYY 711
Query: 701 PGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIA 760
P E KIS+ +ILIPP K N E K NW Y+QWI +K+K FVL+RP + Y I+
Sbjct: 712 PNETYKISKQISILIPPGK-KLFNEFECK---NWTYLQWIMPSKEKPFVLIRPAVEYKIS 767
Query: 761 DSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEK 820
+N LF DL K+ +E+K +N++LY + + I+ I + +IQL++TCL+++W +K
Sbjct: 768 KKLNKSTLF--DLLKKNKKVEIKTINYLLYEDDEQIQIINEKNIQLIQTCLLVHW---KK 822
Query: 821 SSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININP 880
+EA SF+++ T + FL+I L++ + + +K+ S ++ N D
Sbjct: 823 KYFFKEANVSFLKIKTKNNFKTFLQISLIE-YSNLEKKKEKTISKNVLKKNYYDH----- 876
Query: 881 FFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEI 940
FFSI K ++ ++K G IR++ N+N +SFIILSSS+ + F + + IK
Sbjct: 877 FFSISKNELK---NKKQGVIRIISNQNNGMQSFIILSSSDLVKTFKFKKLTKNISIKTNT 933
Query: 941 N-------QFKRNHKIPIK------------------ISLGPLGVAPQI-ANFFSFYHLI 974
N +F +N KI K LG LG I N FS ++LI
Sbjct: 934 NTSTAKFFEFNKNFKILNKKKKLNLTKKNFSIGLLLFKKLGFLGNLHNIVTNSFSSFYLI 993
Query: 975 THNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNY 1034
+ K+ S K ++ + KF+ T Q K+YL+DE+++I K L +I N F NW F +
Sbjct: 994 NYTKLISNKYSI-ITKFQHTCQNPKWYLIDESKKINKLILGKHINYNLF--NWCFPLFSL 1050
Query: 1035 CEK--TFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 1092
+K F I LGQ + EN I + K + SGQ+I++ +++ IRLA PYLAT GATI
Sbjct: 1051 LKKKIDFQTIKLGQLLFENFVISKYKT--SYPSGQIISININYFIIRLAKPYLATGGATI 1108
Query: 1093 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1152
H +YGE + EGD L+T IYE+ +SGDI QGLPKVEQ+LE R I+S+S+NLE + WN
Sbjct: 1109 HNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLENGFEDWNND 1168
Query: 1153 ITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVS 1212
+ +G W F + ++++ Q +I+LV++IQ+VY+SQGV I N+HIEIIVRQ+TSKV+
Sbjct: 1169 MIKFIGNLWGFFLSTKISMEQGQINLVDQIQKVYQSQGVQISNKHIEIIVRQMTSKVITL 1228
Query: 1213 EDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETAR 1272
EDGM+NVF PGELI R Q+ RALEE++ Y+ +LLGITK SLNTQSFISEASFQET R
Sbjct: 1229 EDGMTNVFLPGELIEFSRTQKMNRALEEAVPYKPILLGITKASLNTQSFISEASFQETTR 1288
Query: 1273 VLAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKI 1308
VLAKAAL+GRIDWLKGLKEN++LGG++P GTG +++
Sbjct: 1289 VLAKAALKGRIDWLKGLKENVILGGLVPAGTGSQEV 1324
>dbj|BAC55419.1| RNA polymerase beta'' subunit [Anthoceros formosae]
gi|28202151|ref|NP_777392.1| RNA polymerase beta'' chain
[Anthoceros formosae] gi|27807853|dbj|BAC55328.1| RNA
polymerase beta'' subunit [Anthoceros formosae]
gi|41017987|sp|Q85C71|RPOC2_ANTFO DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1445
Score = 1214 bits (3141), Expect = 0.0
Identities = 691/1405 (49%), Positives = 916/1405 (65%), Gaps = 121/1405 (8%)
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAE A L+F+NKVI GTAIK+ I RL+ HFG+ YT+HILDQ+KTLGF+QAT + SLGID
Sbjct: 1 MAESAKLLFYNKVIDGTAIKQFIGRLVAHFGITYTAHILDQLKTLGFQQATYAATSLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLT PSKGWL+QDAE S LEKHH YGNVHAVEKLRQ IE WYATSEYL+QEMNPNF
Sbjct: 61 DLLTAPSKGWLIQDAEHHSYTLEKHHRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDP NPVH+MSFSGARG+ASQVHQLVGMRGL+SDPQGQ+IDLPI+SN REGLSLTEYII
Sbjct: 121 MTDPLNPVHMMSFSGARGSASQVHQLVGMRGLVSDPQGQIIDLPIKSNFREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVN-TRNRMMSERI 239
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR+TDC T RGIS+N T ++ + +I
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKTDCNTFRGISLNSTEDKKKNLQI 240
Query: 240 LIQT-LIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWIC 298
Q L+GRVLAD++YI +RC+ +RNQDI LI + I +T I IR+P TC++ WIC
Sbjct: 241 FTQQKLVGRVLADNLYINARCLAIRNQDINTNLIEKLITLKTPLISIRSPLTCKSMLWIC 300
Query: 299 RLCYGRSPIH-GNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSN 357
+LCYG S H G+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE+VR+P N
Sbjct: 301 QLCYGWSLTHYGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFN 360
Query: 358 GKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSE 417
G I+F+ + YPTRTRHGHPA++C DL VTI+S + +HN+IIP +S LL+QN+QYV+S+
Sbjct: 361 GTIEFDTDLVYPTRTRHGHPAWVCRTDLAVTIKSQNKIHNLIIPSQSLLLIQNNQYVESK 420
Query: 418 QIIAEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWIL 477
Q+IAE+ A KEKV+K+I+ + EGEMHWS + H S++ +SNVH++ T HLWIL
Sbjct: 421 QLIAEVHAKVSPF--KEKVQKYIYCNIEGEMHWSKRVRHASKYLHSNVHLIFNTGHLWIL 478
Query: 478 SGNSHKSDTVSLSLLKDQDQMSTHSL---------------------PTAKRNTSNFLVS 516
SG+SH+ T S+ K+QDQ++T P ++ S
Sbjct: 479 SGSSHEDKTSSM-FFKNQDQINTKFFISPRKILFMKKTNQVNSKNLDPYLEKEMETLNYS 537
Query: 517 NNQVRLCPDHCHFMHPTI---SPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVE 573
N + + +F++P+I + + +K+ F++ L E+ ++ +
Sbjct: 538 NLYLGILNKSRNFVYPSIILHDYEVKRIYDEKKGENFLL--LEERHGEKKTQIFRRFVLN 595
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRG--IREFKPKY 631
IP GI+ I A +DP Y QS GI KY TI ++ I K + + R I +P+Y
Sbjct: 596 IPKSGILENKDIFAISNDPGYGIQSPGIIKYGTIKVNPIKGKGETFKNRETKILRLRPRY 655
Query: 632 Q-IKVDRFFFIPQEVHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKK 688
Q I+ FF IP+EVHIL ES I+VRN+S+I NT IT + +S+VGGLVR+ K
Sbjct: 656 QVIEPGNFFPIPEEVHILYESFPPILVRNDSLIKKNTQITSDIRSQVGGLVRIRRKMNDS 715
Query: 689 IELKIFSGDIHFPGEIDKISQHSAILIPP-EMVKKKNSKESKKKTNWRYIQWITTTKKKY 747
E+K+ G ++ P E IS+ + IL+PP E + K E NW Y++WIT K+K
Sbjct: 716 YEVKVLPGRVYHPEERRNISKQNDILVPPGEEISNKFQSE-----NWLYLEWITPPKEKP 770
Query: 748 FVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLV 807
F+ +RP I + + + +L + F + K+ + L++K + ++LY +G+ + T IQL+
Sbjct: 771 FIFIRPAIEFIVPEETDLAETFTLNSQKKQEILKVKKIRYLLYEDGEEVEVTNKTGIQLI 830
Query: 808 RTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGL 867
+T LVL+W ED SSI++ AS E+ TNGL + FL+I L++ I I K+ + +
Sbjct: 831 QTGLVLDWKED---SSIKKVYASLTEIETNGLSKKFLQISLIEHPIFEIEKKKNNVN--- 884
Query: 868 ISYNESDRININPFFSIYKENIQQSLSQKH-GTIRMLLNRNKENRSFIILSSSNCFQM-- 924
+ Y ++ IN +S + N + L + G IR+ N N+E++S ILS + Q+
Sbjct: 885 LKYLFTNEIN----YSSHSFNYENGLFNGYRGIIRISSNENQEDKSLPILSPFDFVQIFL 940
Query: 925 ----------------------------------------------GPFNNVKY--HNGI 936
G F N ++ HN I
Sbjct: 941 SKNSEEYTPEMKDEGNFNLDTNSIFYAKSFVKKFNQNSITSSQNSSGTFINKEFYNHNNI 1000
Query: 937 KEEINQFK--RNHKIPIKIS---------LGPLGVAPQIANFFSFYHLITHNKISSIKKN 985
+E N K RN + I+ + LG LG + + + F F + I +
Sbjct: 1001 NQEFNSRKIIRNFFLSIERNFMEILLLRKLGLLGNSHSLPSPFQFSCWANTHNQPIINRY 1060
Query: 986 LQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHL-NWDF-IHPNYCEKTFPIIS 1043
L ++ FQV K+Y DEN++ +K DL N I +HL W F I +Y E ++
Sbjct: 1061 SILENLRDVFQVPKWYFFDENKKTHKLDLSKNSI---YHLLTWSFSIALSYEEGAIHLVG 1117
Query: 1044 LGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEG 1103
LGQFICEN+ I +K +SGQ+I + +F+ +RLA P LAT GATIH HYG+++ +G
Sbjct: 1118 LGQFICENISI-SSKYQTISESGQIIAIHPEFLVVRLAKPSLATGGATIHSHYGQIIKKG 1176
Query: 1104 DILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRF 1163
D+L+T +YE+ +SGDI QGLPKVEQ+LE R I+S S+NLE + WN +T LG W F
Sbjct: 1177 DVLITLVYERLKSGDIIQGLPKVEQLLEARPINSTSINLENGFENWNRDMTKSLGSLWGF 1236
Query: 1164 LIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPG 1223
L+ A+ T+ QS+I+LV++IQ VY+SQGV+I ++HIEI+VRQ+TSKVL EDGM+N F PG
Sbjct: 1237 LLSAKTTMNQSQINLVDQIQEVYQSQGVYISDKHIEIVVRQMTSKVLTLEDGMANGFLPG 1296
Query: 1224 ELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRI 1283
ELI RAQR R LEES+ Y+ +LLGITK SLNTQSFISEASFQET RVLAKAALRGRI
Sbjct: 1297 ELIESSRAQRMNRVLEESVLYKPILLGITKASLNTQSFISEASFQETTRVLAKAALRGRI 1356
Query: 1284 DWLKGLKENLVLGGIIPVGTGFKKI 1308
DWLKGLKEN++ GG+I GTG +++
Sbjct: 1357 DWLKGLKENVIFGGVISAGTGCQEV 1381
>dbj|BAC85071.1| RNA polymerase beta'' subunit [Physcomitrella patens subsp. patens]
gi|34501434|ref|NP_904221.1| RNA polymerase beta'' chain
[Physcomitrella patens subsp. patens]
gi|41017897|sp|P60290|RPOC2_PHYPA DNA-directed RNA
polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1330
Score = 1208 bits (3126), Expect = 0.0
Identities = 664/1329 (49%), Positives = 888/1329 (65%), Gaps = 74/1329 (5%)
Query: 7 LVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGIDDLLTIP 66
++F+NKV+ TAIK++ISRLI HFG+ YT++ILDQ+KT+GF+QAT +ISLGIDDLLT P
Sbjct: 1 MLFYNKVMDRTAIKQLISRLITHFGITYTTYILDQLKTVGFKQATQAAISLGIDDLLTAP 60
Query: 67 SKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFSMTDPFN 126
SK WL+QDAEQQ I EKH+ YGNVHAVEKLRQ IE WYATSEYL+QEMNPNF MTDP N
Sbjct: 61 SKSWLIQDAEQQGYISEKHYRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFRMTDPLN 120
Query: 127 PVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGAR 186
PVH+MSFSGARG+ SQVHQLVGMRGLMSDPQGQ+IDLPIQSN REGLSLTEYIISCYGAR
Sbjct: 121 PVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTEYIISCYGAR 180
Query: 187 KGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERILIQTLIG 246
KGVVDTAVRTSDAGYLTRRLVEVVQHIVVR+ DCGT I V + LIG
Sbjct: 181 KGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTSENIFVTPLQNNYKKN---NKLIG 237
Query: 247 RVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSP 306
R+LAD+IYI RCI +RNQDI L+ INFQ + IFIR+P C++ WIC+LCYG S
Sbjct: 238 RILADNIYINGRCIAIRNQDITTNLVISLINFQRKGIFIRSPLICKSMLWICQLCYGWSL 297
Query: 307 IHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENS 366
HGNL+ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTG AE++R+P NG I+F+ NS
Sbjct: 298 THGNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRTPFNGIIQFDTNS 357
Query: 367 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 426
YPTRTRHGHPA++C +L V I+S +HN++IP +S LLVQ++QYV+S+Q+IAE+RA
Sbjct: 358 VYPTRTRHGHPAWICNNNLSVVIKSKKKLHNLVIPTQSLLLVQSNQYVESKQVIAEVRAK 417
Query: 427 TYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 486
T KEKV+K+I+S+ GEMHWS+ + H SE+ +SNVH+L KT H+WIL+GN K +
Sbjct: 418 TSP--FKEKVQKYIYSNLSGEMHWSSKVQHSSEYIHSNVHLLRKTGHIWILAGNFDKDNK 475
Query: 487 VSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKR 546
S ++QD++ + LP AK+ + F + HF++ + S+++
Sbjct: 476 FSFIFYQNQDKLD-NKLPIAKQTLNYFQLKE----------HFLNNFWNSIYSSIILYNY 524
Query: 547 RNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKT 606
R FL + + +L+ +++P +GI+ +N I A F+DP+YR ++SGI KY
Sbjct: 525 R------FLEKKNNKYEKKLLFQFMLKLPKNGILKQNDIFAIFNDPKYRIKNSGIIKYGN 578
Query: 607 IGIHSIFQKEDLIEYRGIREFKPKYQI-KVDRFFFIPQEVHILSES--SSIMVRNNSIIG 663
I + I +K D+ E + + +P+Y+I K FF +P+EV+IL +S SSI+V+NNS I
Sbjct: 579 IKVDLINKKNDIFEDQKTKTVRPRYKILKEGNFFLLPEEVYILDQSSFSSILVKNNSFIK 638
Query: 664 VNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKK 723
T IT N S++ G V+++K ++KI G I++P E K + + ILIPP +
Sbjct: 639 AGTKITFNISSKITGFVKIKKKFNNFKIKILPGSIYYPKEKQKNFKQNGILIPP----GE 694
Query: 724 NSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKL---FPQDLFKEWDNL 780
E + NW Y++WI +K F L+RP I Y I + N + L F DL KE +
Sbjct: 695 KIFEQFRAKNWIYLEWIVLSKDNSFFLIRPAIEYKIIFNDNPLTLPIPFYLDLLKEQKKI 754
Query: 781 ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 840
+++ + +ILY + + + DT IQL++TCL+LNW E I+EA SF+++ N +I
Sbjct: 755 KIQTVKYILYEDSEEVEINPDTDIQLIQTCLILNW---ETKVFIKEAHISFIKIRINKII 811
Query: 841 RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQS-------L 893
+ F +I+L++ + L++ +++ I +N F + I Q L
Sbjct: 812 KNFFQINLIE-------------NINLMNKKKNNNIILNYLFKKKRYIINQKDCEKILLL 858
Query: 894 SQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFN----NVKYHNGI--------KEEIN 941
S+ G IR N+N+E F+ILS N FQ F+ N+K N + K+ I
Sbjct: 859 SKTWGIIRTPSNKNQEKSFFLILSPFNLFQTILFDKTKQNLKIENNVEKLFTYEPKKIIK 918
Query: 942 QFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ-LNKFKETFQVIKY 1000
F + LG LG I F + + SI N ++ K+ ++ K+
Sbjct: 919 TFNIEKRKNFVEFLGLLGYLQNITKSFQLFSCKKFSD-KSIPINFSIIDNLKKKIKISKW 977
Query: 1001 YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 1060
+ ++EN+++ K L N IL+ LNW F + +K + +LG F C+ + I +
Sbjct: 978 FFLNENKKVQKFFLTQNTILS--LLNWSFPIFDLAKKKTQLFNLGHFFCDGLSIAEYPTF 1035
Query: 1061 PNLKSGQVITVQMDF-VGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDI 1119
+SGQ+I + D + IRLA PYLAT GA IH +YGE++ EGDIL+T IYE+ +SGDI
Sbjct: 1036 S--ESGQIIAIYDDLSLVIRLAKPYLATGGAIIHNNYGEIVKEGDILITLIYERLKSGDI 1093
Query: 1120 TQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLV 1179
QGLPKVEQ+LE R + +S+NLEK WN+ +T G W + + A++++ QS+++LV
Sbjct: 1094 IQGLPKVEQLLEARLTNPVSINLEKGFGEWNKDMTNFFGSLWGYFLSAQISMEQSQVNLV 1153
Query: 1180 NKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALE 1239
N+IQ+VYRSQGV+I ++HIEIIVRQ+TSKV EDGM+N F PGELI RA+R RALE
Sbjct: 1154 NQIQKVYRSQGVNISDKHIEIIVRQMTSKVFTLEDGMTNGFLPGELIEFARAKRMNRALE 1213
Query: 1240 ESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLVLGGII 1299
E I Y+ +LLGITK SLNTQSFISEASFQET RVLAKAALRGRIDWLKGLKEN++LGGII
Sbjct: 1214 EVIPYKPVLLGITKASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVILGGII 1273
Query: 1300 PVGTGFKKI 1308
P GTG +++
Sbjct: 1274 PTGTGCEEV 1282
>pir||A05028 rpoC protein homolog - common tobacco chloroplast
Length = 862
Score = 1117 bits (2888), Expect = 0.0
Identities = 582/812 (71%), Positives = 673/812 (82%), Gaps = 18/812 (2%)
Query: 522 LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGI 579
+C + ++ I + S+LL+K+RRN+FIIP SI+E NELMP IS+EIP++GI
Sbjct: 21 ICAGQYNLVYSPILHENSDLLSKRRRNKFIIPL--HSIQELENELMPCSGISIEIPVNGI 78
Query: 580 IHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFF 639
+NSILAYFDDP+YR +SSGI KY T+ HS+ +KEDL+EYRG++EF+PKYQ+KVDRFF
Sbjct: 79 FRRNSILAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQMKVDRFF 138
Query: 640 FIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIH 699
FIP+EVHIL SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIH
Sbjct: 139 FIPEEVHILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIH 198
Query: 700 FPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDI 759
FPGE DKIS+H+ +LIPP K+NSKESKK NW Y+Q IT +KKK+FVLVRPV+ Y+I
Sbjct: 199 FPGETDKISRHTGVLIPPG-TGKRNSKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEI 257
Query: 760 ADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDE 819
D INL LFP D +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+
Sbjct: 258 TDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDK 317
Query: 820 KSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININ 879
KSSS EEA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD NIN
Sbjct: 318 KSSSCEEARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNIN 377
Query: 880 PFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGI 936
PF SIY K IQQS++Q GTI LLNRNKE +S IILS++NC +MGPF +VKYH+ I
Sbjct: 378 PFSSIYSYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVI 437
Query: 937 KEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQ 996
K+ I K++ IPI+ SLGPLG + I NF+S YHLITHN+I + LQL+ K+TFQ
Sbjct: 438 KKSI---KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQIL-VTNYLQLDNLKQTFQ 493
Query: 997 VIK--YYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCI 1054
VIK YYLMDEN +I+ PD NIILNPF+LNW F+H NYCE+T IISLGQFICENVCI
Sbjct: 494 VIKFKYYLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI 553
Query: 1055 VQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKS 1114
KNGP LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKS
Sbjct: 554 A--KNGPPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKS 611
Query: 1115 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQS 1174
RSGDITQGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW FLIGAELTIAQS
Sbjct: 612 RSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQS 671
Query: 1175 RISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRT 1234
RISLVNKIQ+VYRSQGV IHNRH+EIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA+R
Sbjct: 672 RISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERM 731
Query: 1235 GRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLV 1294
GRALEE+ICYR +LLGIT+ SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN+V
Sbjct: 732 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 791
Query: 1295 LGGIIPVGTGFKKIGDRSSARQDTKITLETIK 1326
LGG+IPVGTGFK G ++Q I LET K
Sbjct: 792 LGGVIPVGTGFK--GLVHPSKQHNNIPLETKK 821
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,210,081,105
Number of Sequences: 2540612
Number of extensions: 95253560
Number of successful extensions: 250843
Number of sequences better than 10.0: 960
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 246439
Number of HSP's gapped (non-prelim): 2962
length of query: 1332
length of database: 863,360,394
effective HSP length: 140
effective length of query: 1192
effective length of database: 507,674,714
effective search space: 605148259088
effective search space used: 605148259088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)
Description of BAB33196.1