Lotus japonicus (Chloroplast)
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33192.1	34 aa
         (34 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD28715.1| PSII low MW protein [Calycanthus floridus var. g...    66  3e-10
emb|CAJ00752.1| photosystem II M protein [Cucumis sativus]             65  4e-10
gb|AAP53245.1| putative PSII low MW protein from chromosome 10 c...    65  7e-10
gb|AAS46110.1| photosystem II M protein; psbM [Oryza sativa (jap...    65  7e-10
emb|CAB67147.1| PSII M-protein [Oenothera elata subsp. hookeri] ...    64  9e-10
emb|CAD45101.1| unnamed protein product [Amborella trichopoda] g...    64  1e-09
emb|CAA60274.1| PSII low MW protein [Zea mays] gi|51872079|gb|AA...    63  2e-09
gb|AAX58141.1| PSII M protein [Lactuca sativa]                         63  3e-09
ref|NP_114247.1| photosystem II M protein [Triticum aestivum] gi...    62  6e-09
ref|YP_086960.1| PSII M protein [Panax ginseng] gi|51235307|gb|A...    60  2e-08
sp|Q7YNV4|PSBM_ARAEL Photosystem II reaction center M protein (P...    60  2e-08
gb|AAP34500.1| PsbM [Panax pseudoginseng var. bipinnatifidus]          60  2e-08
emb|CAA28059.1| unnamed protein product [Marchantia polymorpha] ...    58  6e-08
dbj|BAC85016.1| PSII M-protein [Physcomitrella patens subsp. pat...    58  8e-08
gb|AAP29385.2| photosystem II M protein [Adiantum capillus-vener...    57  2e-07
ref|YP_209554.1| photosystem II protein M [Huperzia lucidula] gi...    56  2e-07
dbj|BAB84210.1| PSII M protein [Psilotum nudum] gi|22653942|sp|Q...    54  9e-07
gb|AAD54779.1| M protein of photosystem II [Nephroselmis olivace...    54  1e-06
gb|AAM96549.1| M protein of photosystem II [Chaetosphaeridium gl...    54  2e-06
dbj|BAA57919.1| photosystem II PsbM protein [Chlorella vulgaris]...    53  2e-06

>emb|CAD28715.1| PSII low MW protein [Calycanthus floridus var. glaucus]
          gi|13358975|dbj|BAB33192.1| PSII low MW protein [Lotus
          corniculatus var. japonicus]
          gi|13518434|ref|NP_084794.1| photosystem II M protein
          [Lotus corniculatus var. japonicus]
          gi|32480837|ref|NP_862748.1| photosystem II M protein
          [Calycanthus floridus var. glaucus]
          gi|61230115|sp|P69528|PSBM_LOTJA Photosystem II
          reaction center M protein (PSII-M)
          gi|61230019|sp|P69529|PSBM_PEA Photosystem II reaction
          center M protein (PSII-M) gi|343997|dbj|BAA02098.1|
          photosystem II polypeptide M [Pisum sativum]
          gi|61215187|sp|Q7HKX9|PSBM_CALFE Photosystem II
          reaction center M protein (PSII-M)
          Length = 34

 Score = 65.9 bits (159), Expect = 3e-10
 Identities = 34/34 (100%), Positives = 34/34 (100%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34


>emb|CAJ00752.1| photosystem II M protein [Cucumis sativus]
          Length = 34

 Score = 65.5 bits (158), Expect = 4e-10
 Identities = 33/34 (97%), Positives = 34/34 (99%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKT+SQSD
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTISQSD 34


>gb|AAP53245.1| putative PSII low MW protein from chromosome 10 chloroplast
          insertion [Oryza sativa (japonica cultivar-group)]
          gi|57115555|gb|AAW33084.1| photosystem II protein M
          [Plantago rugelii] gi|57115552|gb|AAW33082.1|
          photosystem II protein M [Plantago rigida]
          gi|57115549|gb|AAW33080.1| photosystem II protein M
          [Plantago media] gi|57115546|gb|AAW33078.1| photosystem
          II protein M [Plantago lanceolata]
          gi|57115543|gb|AAW33076.1| photosystem II protein M
          [Plantago coronopus] gi|57115540|gb|AAW33074.1|
          photosystem II protein M [Plantago australis]
          gi|2924261|emb|CAA77413.1| PSII M-protein [Nicotiana
          tabacum] gi|11969|emb|CAA33984.1| PSII low MW protein
          [Oryza sativa (japonica cultivar-group)]
          gi|37533312|ref|NP_920958.1| putative PSII low MW
          protein from chromosome 10 chloroplast insertion [Oryza
          sativa (japonica cultivar-group)]
          gi|50250321|emb|CAF28587.1| PSII low MW protein
          [Nymphaea alba] gi|21628656|emb|CAD36619.1| photosystem
          II polypeptide M [Quercus petraea]
          gi|7636099|emb|CAB88719.1| PSII M-protein [Spinacia
          oleracea] gi|20068325|emb|CAC88038.1| PSII M protein
          [Atropa belladonna] gi|5881688|dbj|BAA84379.1| PSII low
          MW protein [Arabidopsis thaliana]
          gi|21327351|gb|AAM48256.1| Putative PSII low MW protein
          from chromosome 10 chloroplast insertion [Oryza sativa
          (japonica cultivar-group)] gi|19920159|gb|AAM08591.1|
          Putative PSII low MW protein from chromosome 10
          chloroplast insertion [Oryza sativa (japonica
          cultivar-group)] gi|28261711|ref|NP_783226.1|
          photosystem II M protein [Atropa belladonna]
          gi|7525027|ref|NP_051053.1| photosystem II protein M
          [Arabidopsis thaliana] gi|11466775|ref|NP_039371.1|
          photosystem II M protein [Oryza sativa (japonica
          cultivar-group)] gi|50233959|ref|YP_052737.1| PSII low
          MW protein [Oryza nivara] gi|11465948|ref|NP_054490.1|
          photosystem II M protein [Nicotiana tabacum]
          gi|11497518|ref|NP_054926.1| photosystem II M protein
          [Spinacia oleracea] gi|50346776|ref|YP_053149.1| PSII
          low MW protein [Nymphaea alba]
          gi|61214668|sp|Q5IBK3|PSBM_PLALA Photosystem II
          reaction center M protein (PSII-M)
          gi|49065806|sp|P62112|PSBM_SPIOL Photosystem II
          reaction center M protein (PSII-M)
          gi|49065805|sp|P62111|PSBM_TOBAC Photosystem II
          reaction center M protein (PSII-M)
          gi|49065804|sp|P62110|PSBM_ORYSA Photosystem II
          reaction center M protein (PSII-M)
          gi|49065803|sp|P62109|PSBM_ARATH Photosystem II
          reaction center M protein (PSII-M)
          gi|61215132|sp|Q7FNT0|PSBM_ATRBE Photosystem II
          reaction center M protein (PSII-M)
          gi|61214968|sp|Q6EW54|PSBM_NYMAL Photosystem II
          reaction center M protein (PSII-M)
          gi|61214952|sp|Q6ENI6|PSBM_ORYNI Photosystem II
          reaction center M protein (PSII-M)
          gi|49614983|dbj|BAD26766.1| PSII low MW protein [Oryza
          nivara] gi|226687|prf||1603356M photosystem II low MW
          protein
          Length = 34

 Score = 64.7 bits (156), Expect = 7e-10
 Identities = 33/34 (97%), Positives = 34/34 (99%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 34


>gb|AAS46110.1| photosystem II M protein; psbM [Oryza sativa (japonica
          cultivar-group)] gi|42795608|gb|AAS46173.1| photosystem
          II M protein; gpsbM [Oryza sativa (japonica
          cultivar-group)]
          Length = 69

 Score = 64.7 bits (156), Expect = 7e-10
 Identities = 33/34 (97%), Positives = 34/34 (99%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKTVSQ+D
Sbjct: 36 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND 69


>emb|CAB67147.1| PSII M-protein [Oenothera elata subsp. hookeri]
          gi|13518323|ref|NP_084682.1| photosystem II M protein
          [Oenothera elata subsp. hookeri]
          gi|18203294|sp|Q9MTM8|PSBM_OENHO Photosystem II
          reaction center M protein (PSII-M)
          Length = 34

 Score = 64.3 bits (155), Expect = 9e-10
 Identities = 33/34 (97%), Positives = 34/34 (99%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKTVSQS+
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSE 34


>emb|CAD45101.1| unnamed protein product [Amborella trichopoda]
          gi|34500908|ref|NP_904093.1| hypothetical protein
          AmtrCp016 [Amborella trichopoda]
          gi|61215074|sp|Q70Y09|PSBM_AMBTC Photosystem II
          reaction center M protein (PSII-M)
          Length = 35

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
          MEVNILAFIATALFILVPTAFLLIIYVKTVSQS
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33


>emb|CAA60274.1| PSII low MW protein [Zea mays] gi|51872079|gb|AAU12167.1|
          photosystem II low MW protein [Pennisetum glaucum]
          gi|48478663|gb|AAT44683.1| photosystem II M protein
          [Saccharum hybrid cultivar SP-80-3280]
          gi|50812516|ref|YP_054619.1| PSII M-protein [Saccharum
          officinarum] gi|11467180|ref|NP_043013.1| photosystem
          II M protein [Zea mays] gi|48478761|ref|YP_024369.1|
          photosystem II M protein [Saccharum hybrid cultivar
          SP-80-3280] gi|1346867|sp|P48189|PSBM_MAIZE Photosystem
          II reaction center M protein (PSII-M)
          gi|61214960|sp|Q6ENX5|PSBM_SACOF Photosystem II
          reaction center M protein (PSII-M)
          gi|61214875|sp|Q672I5|PSBM_PENAM Photosystem II
          reaction center M protein (PSII-M)
          gi|49659500|dbj|BAD27281.1| PSII M-protein [Saccharum
          officinarum]
          Length = 34

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 32/34 (94%), Positives = 33/34 (96%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKT SQ+D
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTASQND 34


>gb|AAX58141.1| PSII M protein [Lactuca sativa]
          Length = 34

 Score = 62.8 bits (151), Expect = 3e-09
 Identities = 32/34 (94%), Positives = 34/34 (99%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKTVSQ++
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQNN 34


>ref|NP_114247.1| photosystem II M protein [Triticum aestivum]
          gi|15214193|sp|Q9XPS6|PSBM_WHEAT Photosystem II
          reaction center M protein (PSII-M)
          gi|4958865|dbj|BAA78038.1| PSII M-protein [Triticum
          aestivum] gi|13928193|dbj|BAB47022.1| PSII low MW
          protein [Triticum aestivum]
          Length = 34

 Score = 61.6 bits (148), Expect = 6e-09
 Identities = 31/34 (91%), Positives = 34/34 (99%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPT+FLLIIYVKTVSQ++
Sbjct: 1  MEVNILAFIATALFILVPTSFLLIIYVKTVSQNN 34


>ref|YP_086960.1| PSII M protein [Panax ginseng] gi|51235307|gb|AAT98503.1| PSII M
          protein [Panax ginseng]
          gi|61215262|sp|Q7YNW2|PSBM_PANGI Photosystem II
          reaction center M protein (PSII-M)
          gi|30841658|gb|AAP34558.1| PsbM [Panax zingiberensis]
          gi|30841646|gb|AAP34550.1| PsbM [Panax variabilis]
          gi|30841643|gb|AAP34548.1| PsbM [Panax variabilis]
          gi|30841640|gb|AAP34546.1| PsbM [Panax variabilis]
          gi|30841637|gb|AAP34544.1| PsbM [Panax trifolius]
          gi|30841595|gb|AAP34516.1| PsbM [Panax notoginseng]
          gi|30841592|gb|AAP34514.1| PsbM [Panax notoginseng]
          gi|30841577|gb|AAP34504.1| PsbM [Panax ginseng]
          Length = 36

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 31/33 (93%), Positives = 32/33 (96%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
          MEVNILAFIATALFILVPTAFLLIIYVKT SQ+
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTESQN 33


>sp|Q7YNV4|PSBM_ARAEL Photosystem II reaction center M protein (PSII-M)
          gi|61215259|sp|Q7Y7G0|PSBM_PANQU Photosystem II
          reaction center M protein (PSII-M)
          gi|30841673|gb|AAP34568.1| PsbM [Panax assamicus]
          gi|30841670|gb|AAP34566.1| PsbM [Panax assamicus]
          gi|30841667|gb|AAP34564.1| PsbM [Panax assamicus]
          gi|30841664|gb|AAP34562.1| PsbM [Aralia elata]
          gi|30841661|gb|AAP34560.1| PsbM [Aralia franchetii]
          gi|30841655|gb|AAP34556.1| PsbM [Panax wangianus]
          gi|30841652|gb|AAP34554.1| PsbM [Panax wangianus]
          gi|30841649|gb|AAP34552.1| PsbM [Panax vietnamensis]
          gi|30841634|gb|AAP34542.1| PsbM [Panax stipuleanatus]
          gi|30841631|gb|AAP34540.1| PsbM [Panax stipuleanatus]
          gi|30841628|gb|AAP34538.1| PsbM [Panax stipuleanatus]
          gi|30841625|gb|AAP34536.1| PsbM [Panax stipuleanatus]
          gi|30841622|gb|AAP34534.1| PsbM [Panax sinensis]
          gi|30841619|gb|AAP34532.1| PsbM [Panax shangianus]
          gi|30841616|gb|AAP34530.1| PsbM [Panax quinquefolius]
          gi|30841613|gb|AAP34528.1| PsbM [Panax quinquefolius]
          gi|30841610|gb|AAP34526.1| PsbM [Panax quinquefolius]
          gi|30841607|gb|AAP34524.1| PsbM [Panax pseudoginseng]
          gi|30841604|gb|AAP34522.1| PsbM [Panax omeiensis]
          gi|30841601|gb|AAP34520.1| PsbM [Panax omeiensis]
          gi|30841598|gb|AAP34518.1| PsbM [Panax omeiensis]
          gi|30841589|gb|AAP34512.1| PsbM [Panax japonicus var.
          major] gi|30841586|gb|AAP34510.1| PsbM [Panax japonicus
          var. major] gi|30841583|gb|AAP34508.1| PsbM [Panax
          japonicus] gi|30841580|gb|AAP34506.1| PsbM [Panax
          japonicus] gi|30841574|gb|AAP34502.1| PsbM [Panax
          pseudoginseng var. elegantior]
          gi|30841568|gb|AAP34498.1| PsbM [Panax pseudoginseng
          var. angustifolius] gi|30841565|gb|AAP34496.1| PsbM
          [Panax pseudoginseng var. angustifolius]
          gi|30841562|gb|AAP34494.1| PsbM [Panax pseudoginseng
          var. bipinnatifidus] gi|30841559|gb|AAP34492.1| PsbM
          [Panax pseudoginseng var. bipinnatifidus]
          gi|30841556|gb|AAP34490.1| PsbM [Panax pseudoginseng
          var. bipinnatifidus] gi|30841553|gb|AAP34488.1| PsbM
          [Panax pseudoginseng var. bipinnatifidus]
          Length = 35

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 31/33 (93%), Positives = 32/33 (96%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
          MEVNILAFIATALFILVPTAFLLIIYVKT SQ+
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTESQN 33


>gb|AAP34500.1| PsbM [Panax pseudoginseng var. bipinnatifidus]
          Length = 36

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 31/33 (93%), Positives = 32/33 (96%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
          MEVNILAFIATALFILVPTAFLLIIYVKT SQ+
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTESQN 33


>emb|CAA28059.1| unnamed protein product [Marchantia polymorpha]
          gi|131371|sp|P12168|PSBM_MARPO Photosystem II reaction
          center M protein (PSII-M) gi|11466677|ref|NP_039273.1|
          photosystem II M protein [Marchantia polymorpha]
          Length = 34

 Score = 58.2 bits (139), Expect = 6e-08
 Identities = 28/33 (84%), Positives = 32/33 (96%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQS 33
          MEVNILAFIATALFIL+PTAFLLI+YV+T SQ+
Sbjct: 1  MEVNILAFIATALFILIPTAFLLILYVQTASQN 33


>dbj|BAC85016.1| PSII M-protein [Physcomitrella patens subsp. patens]
          gi|27807940|dbj|BAC55414.1| photosystem II M-protein
          [Anthoceros formosae] gi|34501379|ref|NP_904167.1|
          photosystem II M protein [Physcomitrella patens subsp.
          patens] gi|28202147|ref|NP_777388.1| photosystem II M
          protein [Anthoceros formosae]
          gi|41688680|sp|Q85BK0|PSBM_ANTFO Photosystem II
          reaction center M protein (PSII-M)
          gi|61215071|sp|Q6YXR8|PSBM_PHYPA Photosystem II
          reaction center M protein (PSII-M)
          gi|27807849|dbj|BAC55324.1| photosystem II M-protein
          [Anthoceros formosae]
          Length = 34

 Score = 57.8 bits (138), Expect = 8e-08
 Identities = 28/32 (87%), Positives = 31/32 (96%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
          MEVNILAFIATALFIL+PTAFLLI+YV+T SQ
Sbjct: 1  MEVNILAFIATALFILIPTAFLLILYVQTASQ 32


>gb|AAP29385.2| photosystem II M protein [Adiantum capillus-veneris]
          gi|49574591|ref|NP_848053.2| photosystem II protein M
          [Adiantum capillus-veneris]
          Length = 35

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 25/34 (73%), Positives = 33/34 (96%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAF+ATALFIL+PTAFLLI+Y++T +Q++
Sbjct: 1  MEVNILAFVATALFILIPTAFLLILYIQTAAQNN 34


>ref|YP_209554.1| photosystem II protein M [Huperzia lucidula]
          gi|61214749|sp|Q5SCY3|PSBM_HUPLU Photosystem II
          reaction center M protein (PSII-M)
          gi|50660028|gb|AAT80750.1| photosystem II protein M
          [Huperzia lucidula]
          Length = 34

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 27/34 (79%), Positives = 32/34 (93%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFIL+PTAF LI+YV+T SQ++
Sbjct: 1  MEVNILAFIATALFILIPTAFSLILYVQTASQNN 34


>dbj|BAB84210.1| PSII M protein [Psilotum nudum] gi|22653942|sp|Q8WI22|PSBM_PSINU
          Photosystem II reaction center M protein (PSII-M)
          gi|18860305|ref|NP_569623.1| photosystem II M protein
          [Psilotum nudum]
          Length = 34

 Score = 54.3 bits (129), Expect = 9e-07
 Identities = 27/34 (79%), Positives = 31/34 (90%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFI +PTAFLLI YV+T +QS+
Sbjct: 1  MEVNILAFIATALFISIPTAFLLIPYVQTATQSN 34


>gb|AAD54779.1| M protein of photosystem II [Nephroselmis olivacea]
          gi|18203463|sp|Q9TL37|PSBM_NEPOL Photosystem II
          reaction center M protein (PSII-M)
          gi|11467757|ref|NP_050808.1| photosystem II M protein
          [Nephroselmis olivacea]
          Length = 34

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 25/34 (73%), Positives = 30/34 (87%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNIL  IATALFI++PT+FLLI+YVKT SQ +
Sbjct: 1  MEVNILGLIATALFIIIPTSFLLILYVKTASQQN 34


>gb|AAM96549.1| M protein of photosystem II [Chaetosphaeridium globosum]
          gi|22711945|ref|NP_683771.1| photosystem II M protein
          [Chaetosphaeridium globosum]
          gi|25008971|sp|Q8MA15|PSBM_CHAGL Photosystem II
          reaction center M protein (PSII-M)
          Length = 34

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 26/31 (83%), Positives = 29/31 (92%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVS 31
          MEVNILA IATALF+L+PTAFLLI+YVKT S
Sbjct: 1  MEVNILAVIATALFVLIPTAFLLILYVKTES 31


>dbj|BAA57919.1| photosystem II PsbM protein [Chlorella vulgaris]
          gi|3024461|sp|P56325|PSBM_CHLVU Photosystem II reaction
          center M protein (PSII-M) gi|7524841|ref|NP_045843.1|
          photosystem II protein M [Chlorella vulgaris]
          Length = 36

 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
          MEVNIL  IATALFI++PT+FLLI+YVKT SQ
Sbjct: 1  MEVNILGVIATALFIIIPTSFLLILYVKTASQ 32


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.334    0.144    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,412,438
Number of Sequences: 2540612
Number of extensions: 508780
Number of successful extensions: 4167
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4134
Number of HSP's gapped (non-prelim): 33
length of query: 34
length of database: 863,360,394
effective HSP length: 10
effective length of query: 24
effective length of database: 837,954,274
effective search space: 20110902576
effective search space used: 20110902576
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 69 (31.2 bits)


Description of BAB33192.1