BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33244.1 323 aa
(323 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ycf5 -chloroplast genome- 467 e-132
ccb256 -mitochondrial genome- cytochrome c biogenesis orf256 39 0.003
At2g07681 putative protein 39 0.003
ccb203 -mitochondrial genome- cytochrome c biogenesis orf203 33 0.27
At4g39080 unknown protein 30 2.3
At1g64710 alcohol dehydrogenase (EC 1.1.1.1) like protein 29 3.0
At5g23320 farnesyl cysteine carboxyl methyltransferase-like protein 29 3.9
At2g21410 putative vacuolar proton-ATPase subunit 29 3.9
At1g52200 unknown protein 28 5.2
At2g27810 putative membrane transporter 28 6.7
At4g25240 Pollen-specific protein SKU5 homologue (SKS1) 28 8.8
At1g11880 unknown protein 28 8.8
>ycf5 -chloroplast genome-
Length = 328
Score = 467 bits (1201), Expect = e-132
Identities = 236/330 (71%), Positives = 273/330 (82%), Gaps = 9/330 (2%)
Query: 1 MIFSTLEHILTHISFSVVSIVISIHLITLFVN--QIVGFYDSSKKGMIITFLCITGLLIT 58
MIFS LEHILTHISFSVVSIV++I+ +TL VN +I+GF+DSS KG+IITF ITGLL+T
Sbjct: 1 MIFSILEHILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKGIIITFFGITGLLLT 60
Query: 59 RWFFSGHLPFSDLYESLIFLSWGFSIFYMVPRF-KKQKNDLSTIIAPSVIFTQGFATSGL 117
RW +SGH P S+LYESLIFLSW FSI +MV F KKQ+N L+TI APSVIF QGFATSGL
Sbjct: 61 RWIYSGHFPLSNLYESLIFLSWAFSIIHMVSYFNKKQQNKLNTITAPSVIFIQGFATSGL 120
Query: 118 LTEMHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVITFQELIPILGKS-- 175
L +M QS ILVPALQS WLMMHVSMMILGY ALLCGSLLS+A+LVITF+++ P K
Sbjct: 121 LNKMPQSAILVPALQSQWLMMHVSMMILGYGALLCGSLLSIALLVITFRKVGPTFWKKNI 180
Query: 176 KRLSFLYESFDYAEIKYINMNERNNVL--RKTSFSSYRNYYRYQFIQQLDRWGYRIISLG 233
K+ L E F + + YIN ERN++L + +FS RNYYRYQ IQQLD W +RIISLG
Sbjct: 181 KKNFLLNELFSFDVLYYIN--ERNSILLQQNINFSFSRNYYRYQLIQQLDFWSFRIISLG 238
Query: 234 FIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNSSIVA 293
FIFLT+GILSGAVWANE WGSYWNWDPKETWAFITWTIFAIYLH + N+ + G+NS+IVA
Sbjct: 239 FIFLTVGILSGAVWANETWGSYWNWDPKETWAFITWTIFAIYLHIKTNRNVRGINSAIVA 298
Query: 294 SIGFLIIWICYFGVNLLGIGLHNYGSFTSN 323
IGF++IWICYFGVNLLGIGLH+YGSFTSN
Sbjct: 299 LIGFILIWICYFGVNLLGIGLHSYGSFTSN 328
>ccb256 -mitochondrial genome- cytochrome c biogenesis orf256
Length = 256
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 3/79 (3%)
Query: 230 ISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNS 289
I +G F +++G WG++W WD + T FI+ F IYL + + +KL +
Sbjct: 94 IEMGAFFTLFTLVTGGFRGRPMWGTFWVWDARLTSVFIS---FLIYLGALRFQKLPVEPA 150
Query: 290 SIVASIGFLIIWICYFGVN 308
SI G + I I VN
Sbjct: 151 SISIRAGPIDIPIIKSSVN 169
>At2g07681 putative protein
Length = 256
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 3/79 (3%)
Query: 230 ISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNS 289
I +G F +++G WG++W WD + T FI+ F IYL + + +KL +
Sbjct: 94 IEMGAFFTLFTLVTGGFRGRPMWGTFWVWDARLTSVFIS---FLIYLGALRFQKLPVEPA 150
Query: 290 SIVASIGFLIIWICYFGVN 308
SI G + I I VN
Sbjct: 151 SISIRAGPIDIPIIKSSVN 169
>ccb203 -mitochondrial genome- cytochrome c biogenesis orf203
Length = 203
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 2/45 (4%)
Query: 236 FLTIGILSGAVWANE--AWGSYWNWDPKETWAFITWTIFAIYLHS 278
FLT+GIL G+ WA G +W DP E +F+ + +HS
Sbjct: 52 FLTVGILPGSWWAYHELGRGGWWFRDPVENASFMPRVLATARIHS 96
>At4g39080 unknown protein
Length = 821
Score = 29.6 bits (65), Expect = 2.3
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 22/110 (20%)
Query: 29 LFVNQIVGFYDSSKKGMIITFLCITGLLITRWFFS-GHLPFSDL-YESLIFLSWGFSIFY 86
+FV+Q++ + ++ + T + W S H S + YE ++ L+WG++
Sbjct: 705 IFVHQLIHTIE-----FVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYN--- 756
Query: 87 MVPRFKKQKNDLSTIIAPSVIFTQGFATSGLLTEMHQSVILVPALQSHWL 136
N L I+ V FAT G+L M + AL+ HW+
Sbjct: 757 ---------NPLILIVGVLVFI---FATVGVLLVMETLSAFLHALRLHWV 794
>At1g64710 alcohol dehydrogenase (EC 1.1.1.1) like protein
Length = 380
Score = 29.3 bits (64), Expect = 3.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 21 VISIHLITLFVNQIV------GFYDSSKKGMIITFLCITGLLITRWFFSGHLPFSDLYES 74
++ IH + LF + + GF ++ IT C+ GLL F S LPF D+ E+
Sbjct: 306 LLPIHPMELFQGRSITASVFGGFKPKTQLPFFIT-QCLQGLLNLDLFISHQLPFHDINEA 364
Query: 75 LIFLSWG 81
+ L G
Sbjct: 365 MQLLHQG 371
>At5g23320 farnesyl cysteine carboxyl methyltransferase-like protein
Length = 197
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/77 (25%), Positives = 38/77 (48%), Gaps = 8/77 (10%)
Query: 99 STIIAPSVIFTQGFATSGLLT--EMHQSVILVPALQSHW------LMMHVSMMILGYAAL 150
S + S++ T+ +A + LL+ E +IL P L+ HW L+M + I+ AA+
Sbjct: 38 SNVTLSSLLITKHYALAMLLSLLEYLTEIILFPGLKQHWWVSNFGLIMIIVGEIIRKAAI 97
Query: 151 LCGSLLSVAILVITFQE 167
+ ++ I ++E
Sbjct: 98 ITAGRSFTHLIKINYEE 114
>At2g21410 putative vacuolar proton-ATPase subunit
Length = 821
Score = 28.9 bits (63), Expect = 3.9
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 22/110 (20%)
Query: 29 LFVNQIVGFYDSSKKGMIITFLCITGLLITRWFFS-GHLPFSDL-YESLIFLSWGFSIFY 86
+FV+Q++ + ++ + T + W S H S + YE ++ ++WGF
Sbjct: 705 IFVHQLIHTIE-----FVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLMAWGF---- 755
Query: 87 MVPRFKKQKNDLSTIIAPSVIFTQGFATSGLLTEMHQSVILVPALQSHWL 136
N++ I ++F FAT G+L M + AL+ HW+
Sbjct: 756 ---------NNVFIWIVGILVFI--FATVGVLLVMETLSAFLHALRLHWV 794
>At1g52200 unknown protein
Length = 190
Score = 28.5 bits (62), Expect = 5.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 94 QKNDLSTIIAPSVIFTQ-------GFATSGLLTEMHQSVILVPALQSHWLM 137
Q N + T I P V F Q G T L T M+ ++++PAL SHW+M
Sbjct: 64 QANAVLTTIVPCVTFGQIAEVMDEGEMTCPLGTFMY--LLMMPALCSHWVM 112
>At2g27810 putative membrane transporter
Length = 721
Score = 28.1 bits (61), Expect = 6.7
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 17 VVSIVISIHLITLFVNQIVGFYDSSKKGMIITFLCITGLLITRWFFSGHLPFSDLYESLI 76
VV + + +I V ++ GF S + M+ + LC + T S +L +S+ S
Sbjct: 526 VVELGACVLVIFSLVGKVGGFLASIPQVMVASLLCFMWAMFTALGLS-NLRYSEAGSSRN 584
Query: 77 FLSWGFSIFY--MVPRFKKQ-----KNDLS--TIIAPSVIFTQGFATSGLLTEMHQSVIL 127
+ G S+F+ VP + +Q ++LS + P ++ + G S ++ S +L
Sbjct: 585 IIIVGLSLFFSLSVPAYFQQYGISPNSNLSVPSYYQPYIVSSHGPFKSQYKGDLQFSYLL 644
Query: 128 VPALQSHWLM---MHVSMMILGYAALL 151
V LQ +++M + +SM+I A++
Sbjct: 645 V-YLQMNYVMNTLLSMSMVIAFIMAVI 670
>At4g25240 Pollen-specific protein SKU5 homologue (SKS1)
Length = 589
Score = 27.7 bits (60), Expect = 8.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 233 GFIFLTIGILSGAVWANEAWGSYWNWD 259
G+ F +G+ G +W+ + GSY NWD
Sbjct: 458 GYSFFVVGMDFG-IWSEDKKGSYNNWD 483
>At1g11880 unknown protein
Length = 489
Score = 27.7 bits (60), Expect = 8.8
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 10 LTHISFSVVSIVISIHL------------ITLFVNQIVGFYDSSKKGMIITFLCITGLLI 57
+ H+SF V + +H+ + F + ++G SK G +I C +L+
Sbjct: 418 IVHLSFMVTTAFFIMHVQVATRFLSASPPLYWFASSLIGSPKHSKWGYLIWSYCAAYILL 477
Query: 58 TRWFFSGHLPFS 69
FS PF+
Sbjct: 478 GTLLFSNFYPFT 489
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.329 0.142 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,969,545
Number of Sequences: 26719
Number of extensions: 288222
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 12
length of query: 323
length of database: 11,318,596
effective HSP length: 99
effective length of query: 224
effective length of database: 8,673,415
effective search space: 1942844960
effective search space used: 1942844960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
Description of BAB33244.1