BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33188.1 100 aa
(100 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rps14 -chloroplast genome- ribosomal protein S14 190 1e-49
At2g34520 mitochondrial ribosomal protein S14 49 3e-07
At3g01790 ribosomal protein L13 like protein 28 0.77
At4g36400 unknown protein 28 1.0
At2g07680 putative ABC transporter 27 1.3
At1g33430 elicitor response protein, putative 27 1.3
At4g35680 putative protein 27 2.2
At4g11740 Ara4-interacting protein (SAY1) 27 2.2
At3g63400 cyclophylin (ROC22) 27 2.2
At4g19060 unknown protein (At4g19060) 26 2.9
At2g26530 AR781, similar to yeast pheromone receptor 26 2.9
At4g01210 unknown protein 26 3.8
At5g25200 putative protein 25 5.0
At4g32420 cyclophilin (AtCYP95) 25 5.0
At3g51910 putative heat shock transcription factor 25 6.5
At1g73370 25 6.5
At1g15240 hypothetical protein 25 6.5
At1g10270 unknown protein 25 6.5
At1g08730 myosin MYA1, class V (Z28389) like protein 25 6.5
At3g62620 hypothetical protein 25 8.5
>rps14 -chloroplast genome- ribosomal protein S14
Length = 100
Score = 190 bits (482), Expect = 1e-49
Identities = 91/100 (91%), Positives = 95/100 (95%)
Query: 1 MARKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLH 60
MA+KSLI REKKRQKLE+KYHLIRRSSKKEISK+PSLSEKWKIHGKL+S PRNSAPTRLH
Sbjct: 1 MAKKSLIYREKKRQKLEKKYHLIRRSSKKEISKIPSLSEKWKIHGKLQSPPRNSAPTRLH 60
Query: 61 RRCFSTGRPRANYRDFGLSGHTLREMVHECLLPGATRSSW 100
RRCFSTGRPRANYRDFGLSGH LREMV CLLPGATRSSW
Sbjct: 61 RRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 100
>At2g34520 mitochondrial ribosomal protein S14
Length = 164
Score = 49.3 bits (116), Expect = 3e-07
Identities = 34/93 (36%), Positives = 46/93 (48%), Gaps = 3/93 (3%)
Query: 10 EKKRQKLEQKYHLIRRSSKKEISKVPSLSEKW--KIHGKLESLPRNSAPTRLHRRCFSTG 67
+ +R+ L ++ L RR K K P L + K KL LPRNSA R+ RC TG
Sbjct: 73 DHRRRLLAARFEL-RRKLYKAFCKDPDLPSEMRDKNRYKLSKLPRNSAFARIRNRCVFTG 131
Query: 68 RPRANYRDFGLSGHTLREMVHECLLPGATRSSW 100
R R+ F +S R + + L G T+SSW
Sbjct: 132 RSRSVTELFRVSRIVFRGLASKGALMGITKSSW 164
>At3g01790 ribosomal protein L13 like protein
Length = 205
Score = 28.1 bits (61), Expect = 0.77
Identities = 10/35 (28%), Positives = 25/35 (70%)
Query: 2 ARKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPS 36
AR+++I+ +KK ++ E + +++ K+ +S+VP+
Sbjct: 171 ARRAMIRAQKKAEQAENEGTEVKKGKKRTLSEVPA 205
>At4g36400 unknown protein
Length = 559
Score = 27.7 bits (60), Expect = 1.0
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 14 QKLEQKYHLIRRSSKKEISKVPSLSE----------KWKIHGKLESLPRNSAPTRLHRRC 63
QKL + IR K IS P+ +K GKL L + T LH C
Sbjct: 4 QKLRRSGEFIRFGCKSLISSRPNKDSVSRSVSGFVNHYKSKGKLFELSDGNYKTELHHPC 63
Query: 64 FS--TGRPRANYRDFGLSGHTL 83
S G Y+ FG S +L
Sbjct: 64 ISRNVGMLLQQYKCFGSSAASL 85
>At2g07680 putative ABC transporter
Length = 1146
Score = 27.3 bits (59), Expect = 1.3
Identities = 10/21 (47%), Positives = 16/21 (75%)
Query: 28 KKEISKVPSLSEKWKIHGKLE 48
++E+S SLS+KW +HG +E
Sbjct: 891 QEEVSGPQSLSDKWPVHGLVE 911
>At1g33430 elicitor response protein, putative
Length = 395
Score = 27.3 bits (59), Expect = 1.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 KKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPRANYRDF 76
K + V + S W G +S+ R + R+HR C P AN+R F
Sbjct: 349 KAQAGNVCAASFDWSCSGICKSVDRMA---RVHRACAEGDTPLANFRFF 394
>At4g35680 putative protein
Length = 503
Score = 26.6 bits (57), Expect = 2.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 4 KSLIQREKKRQKLEQKYHLIRRSSKKEISK 33
KS ++R+ +K + Y +R+ +KKEISK
Sbjct: 130 KSALRRKGSLEKEAKAYFNLRKKAKKEISK 159
>At4g11740 Ara4-interacting protein (SAY1)
Length = 564
Score = 26.6 bits (57), Expect = 2.2
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 7/46 (15%)
Query: 2 ARKSLIQREKKRQ-----KLEQKYHLIRRSSKKEIS--KVPSLSEK 40
ARK+ ++ EKK++ KLE++ L R+ KE S K P E+
Sbjct: 439 ARKAFLEEEKKKEEEAQRKLEEEQELERQLDAKEASLPKEPQADEE 484
>At3g63400 cyclophylin (ROC22)
Length = 567
Score = 26.6 bits (57), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 45 GKLESLPRNSAPTRLHRRCFSTGRPRANYR 74
G+ S PR +P R +RR ST R YR
Sbjct: 469 GRFRSPPRRRSPPRYNRRRRSTSRSPDGYR 498
>At4g19060 unknown protein (At4g19060)
Length = 383
Score = 26.2 bits (56), Expect = 2.9
Identities = 22/85 (25%), Positives = 40/85 (46%), Gaps = 5/85 (5%)
Query: 11 KKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKI--HGKLESLPRNSAPTRLHRRCFSTGR 68
+ + + +++ I+ S +E K S ++ HG +S +S+PTR GR
Sbjct: 16 ESKSEFDKELEKIKSSFNEEYEKWSSGKQRGSSSKHGN-QSTHGDSSPTRNSSGSSKKGR 74
Query: 69 PRANYRDFG--LSGHTLREMVHECL 91
P+AN + L H +R ++E L
Sbjct: 75 PKANRVETSSELPDHLIRGFINEKL 99
>At2g26530 AR781, similar to yeast pheromone receptor
Length = 317
Score = 26.2 bits (56), Expect = 2.9
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 3 RKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRR 62
R S E++ Q+ EQ+ ++ K +S +PS S + K S + L R
Sbjct: 185 RVSAYPWEEQEQEQEQEQRDVQEQRKGTLSSIPSTSSSACVSCKSSSSKKWRLKDFLLFR 244
Query: 63 CFSTGRPRAN 72
S GR R N
Sbjct: 245 SASEGRARHN 254
>At4g01210 unknown protein
Length = 1013
Score = 25.8 bits (55), Expect = 3.8
Identities = 14/55 (25%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 4 KSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGK-LESLPRNSAPT 57
+ +++EK+++ LE++ ++ S+ ++S++ S S + K+ GK ++ P N T
Sbjct: 950 RGTLEKEKQKKNLEKEEK--KKKSRDKLSRMRSRSGRQKVIGKYVKPPPENETVT 1002
>At5g25200 putative protein
Length = 367
Score = 25.4 bits (54), Expect = 5.0
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 45 GKLESLPRNSAPTRLHRRCFSTGR 68
G LPR + HRRCF TG+
Sbjct: 305 GSNNILPRRTTHFTDHRRCFETGQ 328
>At4g32420 cyclophilin (AtCYP95)
Length = 837
Score = 25.4 bits (54), Expect = 5.0
Identities = 16/62 (25%), Positives = 29/62 (45%)
Query: 4 KSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRC 63
K+L ++ E+K +RRS K +S+ P +K + + S + +P R +R
Sbjct: 424 KNLTNSRRESPGSEEKGRHVRRSPTKSVSRSPVRVKKERDISRSPSKSLSRSPLRSPKRV 483
Query: 64 FS 65
S
Sbjct: 484 IS 485
>At3g51910 putative heat shock transcription factor
Length = 272
Score = 25.0 bits (53), Expect = 6.5
Identities = 13/45 (28%), Positives = 25/45 (54%)
Query: 6 LIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESL 50
L QR+KK ++LE R+ +S++ L+ + + HGK ++
Sbjct: 196 LKQRDKKIKELEDNESAKRKRGSSSMSELEVLALEMQGHGKQRNM 240
>At1g73370
Length = 942
Score = 25.0 bits (53), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 25 RSSKKEISKVPSLSEKWKIHGK 46
R K EI K+ L EK+K+ GK
Sbjct: 625 REEKAEIKKMHDLIEKYKLKGK 646
>At1g15240 hypothetical protein
Length = 906
Score = 25.0 bits (53), Expect = 6.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 6 LIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNS 54
L+Q + ++QK +K + KE+SK P LS + S P S
Sbjct: 328 LVQLKNEQQKNSKKKSATDKQHVKELSKDPLLSMDTRSSRSWNSFPSTS 376
>At1g10270 unknown protein
Length = 913
Score = 25.0 bits (53), Expect = 6.5
Identities = 22/78 (28%), Positives = 36/78 (45%), Gaps = 16/78 (20%)
Query: 8 QREKKRQKLEQKYHLIRRSSK----KEISKVPSL--------SEKWKIHGKLESLPRNS- 54
+R K+R ++E H +RR K P L ++ +H +++SL R S
Sbjct: 101 RRRKRRLRIEPPLHALRRDPSAPPPKRDPNAPRLPDSTSALVGQRLNLHNRVQSLIRASD 160
Query: 55 --APTRLHRR-CFSTGRP 69
A ++L R+ FS RP
Sbjct: 161 LDAASKLARQSVFSNTRP 178
>At1g08730 myosin MYA1, class V (Z28389) like protein
Length = 1572
Score = 25.0 bits (53), Expect = 6.5
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 2 ARKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHR 61
A++SL ++KK ++ E+K ++ S + K +L + K+ L + AP +
Sbjct: 1048 AQESLEDKKKKLEETEKKGQQLQESLTRMEEKCSNLESENKV---LRQQAVSMAPNK--- 1101
Query: 62 RCFSTGRPRANYRDFGLSGH 81
F +GR R+ + SGH
Sbjct: 1102 --FLSGRSRSILQRGSESGH 1119
>At3g62620 hypothetical protein
Length = 358
Score = 24.6 bits (52), Expect = 8.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 10 EKKRQKLEQKYHLIRRSSKKE-----ISKVPSLSEK----WKIHGKLESLPRNSAPTR 58
EK L+ K + +++ K+E ISK L+EK WK++GK ++ S+P +
Sbjct: 119 EKPVISLKTKGNKKKKTKKQELASDSISKPKLLTEKPEVSWKVNGKKKTEANASSPAK 176
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,302,580
Number of Sequences: 26719
Number of extensions: 88819
Number of successful extensions: 344
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 24
length of query: 100
length of database: 11,318,596
effective HSP length: 76
effective length of query: 24
effective length of database: 9,287,952
effective search space: 222910848
effective search space used: 222910848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Description of BAB33188.1