BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33183.1	158 aa
         (158 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ndhJ -chloroplast genome- NADH dehydrogenase subunit                  303  3e-83
nad9 -mitochondrial genome- NADH dehydrogenase subunit 9               46  1e-05
At5g55480 predicted GPI-anchored protein                               36  0.008
At5g65910 unknown protein                                              30  0.42
At4g07750 putative transposon protein                                  28  1.6
At3g30300 auxin-independent growth promoter-like protein               28  2.7
At1g71000                                                              27  3.5
At3g07950 unknown protein                                              27  4.6
At1g35660 unknown protein                                              26  7.8

>ndhJ -chloroplast genome- NADH dehydrogenase subunit
          Length = 158

 Score =  303 bits (776), Expect = 3e-83
 Identities = 139/158 (87%), Positives = 147/158 (92%)

Query: 1   MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
           MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDV+
Sbjct: 1   MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVA 60

Query: 61  PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
           PGGLLASVYHLTRIE G+ Q EEVCIK+F  R+NPRIPS+FWVWKS DFQERESYDMLGI
Sbjct: 61  PGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGI 120

Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
           +YD+HPRLKRILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct: 121 TYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158


>nad9 -mitochondrial genome- NADH dehydrogenase subunit 9
          Length = 190

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 23/60 (38%), Positives = 35/60 (58%)

Query: 96  RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQ 155
           RI  +  ++ SA   ERE +DM G+S+ NHP L+RI     + G PLRKD     + +++
Sbjct: 97  RISPVVSLFPSAGRWEREVWDMFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSGYVQVR 156


>At5g55480 predicted GPI-anchored protein
          Length = 766

 Score = 36.2 bits (82), Expect = 0.008
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 23/166 (13%)

Query: 5   LSAWLVKHGLVHRSLGFDYQ--GIETL-----QIKPED-WHSIAVILYVYGYNYLRSQCA 56
           L+  ++K G++ RS  FD    GI T+     Q+KPE  W ++    +   +N   S   
Sbjct: 140 LTKVILKQGILSRSAAFDGNSYGISTVKDISTQLKPEGFWLNVQHDAFYAQHNLSMSSFL 199

Query: 57  YDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYD 116
             +S   ++    +L+  E   ++     I     RN P+    F      +    ++Y 
Sbjct: 200 LSISKTVIID---YLSSPEVNFFRN----IGRRFGRNGPKFVFRFLEKDDVEVSTNQTYG 252

Query: 117 MLGISYDNHPRLKR----ILMPESWIGWPLRKDYITPNFYEIQDAH 158
            L     N   LK     +L+P+S+I WP+   Y+ P    +QDAH
Sbjct: 253 SLA---GNLTFLKTFASGVLVPKSYI-WPIESQYLLPRTSFVQDAH 294


>At5g65910 unknown protein
          Length = 432

 Score = 30.4 bits (67), Expect = 0.42
 Identities = 19/63 (30%), Positives = 36/63 (56%), Gaps = 2/63 (3%)

Query: 96  RIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILM-PESWIGWPLRKDYITPNFYEI 154
           +I S F    S D   ++ YD++G++ +    +K + M PE+W+ +PL  D  + + +E+
Sbjct: 122 KIASNFLQLSSEDVDPKD-YDVIGVTEELVAFVKDLAMHPETWLDFPLPDDDDSFDDFEL 180

Query: 155 QDA 157
            DA
Sbjct: 181 ADA 183


>At4g07750 putative transposon protein
          Length = 569

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 97  IPSIFWVWKSAD-FQERESYDMLGISYDNHPRL--KRILMPESWIGWPLRKD 145
           I ++   WKS D    R+  ++LGI  D HP+   KR  +P +   W L K+
Sbjct: 509 ISTLLHCWKSKDGLNARKDLEVLGIRKDLHPKTKGKRTYLPAAL--WSLSKE 558


>At3g30300 auxin-independent growth promoter-like protein
          Length = 677

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 7   AWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNY 50
           AW++K G+V   L  D        + P     + ++L  YGY++
Sbjct: 309 AWMIKRGIVKGKLSVDSAEQRLAGLCPLMPEEVGILLRAYGYSW 352


>At1g71000 
          Length = 146

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 14/52 (26%), Positives = 26/52 (49%), Gaps = 8/52 (15%)

Query: 115 YDMLGISYDN--------HPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
           Y++LG++ D+        + +L +I  P+ W   P R       F +IQ+A+
Sbjct: 10  YEILGVAVDSSAEQIRRAYHKLAKIWHPDRWTKDPFRSGEAKRRFQQIQEAY 61


>At3g07950 unknown protein
          Length = 304

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 11/46 (23%), Positives = 24/46 (51%), Gaps = 5/46 (10%)

Query: 36  WHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQP 81
           W S   + +++  N+L   C +  +      ++Y++TR+E  +Y P
Sbjct: 85  WGSTEFLKFIFVVNFLTYLCVFVTA-----IALYYITRLEVYLYMP 125


>At1g35660 unknown protein
          Length = 1405

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 78  IYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNH 125
           + Q   + +  F+  N    P  +W++KSA   E + +D L I   NH
Sbjct: 416 VVQQNGLAVLRFLQSNCKEDPGAYWLYKSAGEDELQLFD-LSIISKNH 462


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,137,383
Number of Sequences: 26719
Number of extensions: 176565
Number of successful extensions: 243
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 9
length of query: 158
length of database: 11,318,596
effective HSP length: 91
effective length of query: 67
effective length of database: 8,887,167
effective search space: 595440189
effective search space used: 595440189
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)