BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33244.1 323 aa
(323 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79356 homologue to GP|14334440|gb|AAK59418.1 unknown protein {... 91 5e-19
TC79357 similar to GP|14334440|gb|AAK59418.1 unknown protein {Ar... 57 7e-09
TC78573 similar to GP|20197309|gb|AAC63626.2 unknown protein {Ar... 31 0.74
TC85834 similar to GP|16974583|gb|AAL31187.1 AT4g39080/F19H22_18... 30 0.96
TC80140 homologue to GP|21536943|gb|AAM61284.1 putative methioni... 29 2.8
TC87452 similar to GP|11994287|dbj|BAB01470. gb|AAD31369.1~gene_... 29 2.8
TC86937 weakly similar to PIR|T04921|T04921 hypothetical protein... 28 4.8
TC91196 weakly similar to PIR|T17461|T17461 disease resistance p... 28 4.8
AA660327 similar to GP|22296463|dbj putative tyrosine-specific t... 28 6.2
TC89190 28 6.2
AW573898 27 8.1
TC85323 similar to PIR|T06476|T06476 ppf-1 protein - garden pea,... 27 8.1
>TC79356 homologue to GP|14334440|gb|AAK59418.1 unknown protein {Arabidopsis
thaliana}, partial (45%)
Length = 1114
Score = 91.3 bits (225), Expect = 5e-19
Identities = 45/47 (95%), Positives = 47/47 (99%)
Frame = -2
Query: 117 LLTEMHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVI 163
+LT+MHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVI
Sbjct: 966 ILTKMHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVI 826
>TC79357 similar to GP|14334440|gb|AAK59418.1 unknown protein {Arabidopsis
thaliana}, partial (20%)
Length = 607
Score = 57.4 bits (137), Expect = 7e-09
Identities = 26/28 (92%), Positives = 28/28 (99%)
Frame = -2
Query: 117 LLTEMHQSVILVPALQSHWLMMHVSMMI 144
+LT+MHQSVILVPALQSHWLMMHVSMMI
Sbjct: 426 ILTKMHQSVILVPALQSHWLMMHVSMMI 343
>TC78573 similar to GP|20197309|gb|AAC63626.2 unknown protein {Arabidopsis
thaliana}, partial (31%)
Length = 2016
Score = 30.8 bits (68), Expect = 0.74
Identities = 19/68 (27%), Positives = 28/68 (40%), Gaps = 10/68 (14%)
Frame = +1
Query: 265 AFITWTIFAIYLHSRKNKKLEGLNS------SIVASIGFLIIWICYFGV----NLLGIGL 314
AF T I ++H N G + ++ G L W+CY V NL G+G
Sbjct: 1441 AFTTSVIHLCFVHCEANSHYHGKSELIYVLRNVTYCFGALAFWVCYVKVHTLYNLAGLGT 1620
Query: 315 HNYGSFTS 322
GS+ +
Sbjct: 1621 DFSGSYVA 1644
>TC85834 similar to GP|16974583|gb|AAL31187.1 AT4g39080/F19H22_180
{Arabidopsis thaliana}, partial (97%)
Length = 2959
Score = 30.4 bits (67), Expect = 0.96
Identities = 25/110 (22%), Positives = 49/110 (43%), Gaps = 2/110 (1%)
Frame = +2
Query: 29 LFVNQIVGFYDSSKKGMIITFLCITGLLITRWFFS-GHLPFSDL-YESLIFLSWGFSIFY 86
+FV+Q++ + ++ + T + W S H S + YE ++ ++WG+
Sbjct: 2261 IFVHQLIHTIE-----FVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLMAWGY---- 2413
Query: 87 MVPRFKKQKNDLSTIIAPSVIFTQGFATSGLLTEMHQSVILVPALQSHWL 136
N++ +I ++F FAT G+L M + AL+ HW+
Sbjct: 2414 ---------NNVVILIVGLIVFI--FATVGVLLVMETLSAFLHALRLHWV 2530
>TC80140 homologue to GP|21536943|gb|AAM61284.1 putative methionine
aminopeptidase {Arabidopsis thaliana}, partial (77%)
Length = 1254
Score = 28.9 bits (63), Expect = 2.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 181 LYESFDYAEIKYINMNERNNVLRKTSFSSYRNYYRYQFIQQ 221
+++ ++ K I E++ R+ S+SS+RN Y QF++Q
Sbjct: 335 IFQKVKFSNTKTITYGEQHQ-RRRESWSSFRNQYIIQFVEQ 454
>TC87452 similar to GP|11994287|dbj|BAB01470.
gb|AAD31369.1~gene_id:F16J14.11~similar to unknown
protein {Arabidopsis thaliana}, partial (24%)
Length = 1615
Score = 28.9 bits (63), Expect = 2.8
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Frame = -2
Query: 120 EMHQSVILVPALQSHWLMMHVSMMILGYAALLCGSLLSVAILVIT--FQELIPILGKSKR 177
+ H V A + H +HV + L L + A+ I ++ IPIL S+
Sbjct: 1332 QQHPLVTAFMAAKCHLTPVHVDVFTLLKILLAVKTYTQKALRGIAGRVRKTIPILFNSRA 1153
Query: 178 LSFLYESFDYAEIKYIN-------MNERNNVLRKTSFSS 209
+ + +YA IKY++ N + +LRK F+S
Sbjct: 1152 SNIKTTTLNYAIIKYMSCSWVWTMRNHTSIILRKLHFTS 1036
>TC86937 weakly similar to PIR|T04921|T04921 hypothetical protein T9A21.30 -
Arabidopsis thaliana, partial (37%)
Length = 1309
Score = 28.1 bits (61), Expect = 4.8
Identities = 29/118 (24%), Positives = 52/118 (43%), Gaps = 9/118 (7%)
Frame = +1
Query: 61 FFSGHLPFSDLYESLIFL-SWGF-----SIFYMVPRFKKQKNDLSTIIAPSVIFTQGFAT 114
FF+ +L F L E + + S+G S F ++ + N L + S FT
Sbjct: 439 FFALYLGFGLLVEGVYLMYSYGLVYLPLSTFSLICSTELAFNALFSFFLNSQRFTALIFN 618
Query: 115 SGLLTEMHQSVILVPALQSHWLMMHVSMMILGYAALLCGS---LLSVAILVITFQELI 169
S L + S++ V ++ +H ILG+ LC L +A++ +F+++I
Sbjct: 619 SVFLLTISTSLLAVDSISEDSTDLHREKYILGFLFTLCACAAFALYLALVQYSFEKII 792
>TC91196 weakly similar to PIR|T17461|T17461 disease resistance protein D
- tomato, partial (14%)
Length = 695
Score = 28.1 bits (61), Expect = 4.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 51 CITGLLITRWF---FSGHLPFSDLYESLIFLSWGFSIFYMV 88
C+ I +F F H PFS+ ++ +I SW FY +
Sbjct: 31 CVPWHFIHTYFSIVFHSHKPFSNTFQKIIIHSWHGCFFYCI 153
>AA660327 similar to GP|22296463|dbj putative tyrosine-specific transport
protein {Oryza sativa (japonica cultivar-group)},
partial (16%)
Length = 534
Score = 27.7 bits (60), Expect = 6.2
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 3 FSTLEHILTHISFSVVSIVISIH-LITLFV 31
FSTL ILT +SFS I++S ITLF+
Sbjct: 265 FSTLTSILTLVSFSATLILVSFSGAITLFL 176
>TC89190
Length = 722
Score = 27.7 bits (60), Expect = 6.2
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +3
Query: 252 WGSYWNWDPKETWAFITWT 270
W S+WNW+ K W +I T
Sbjct: 288 WKSWWNWNWKWNWCWILTT 344
>AW573898
Length = 333
Score = 27.3 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 75 LIFLSWGFSIFYMVPRFKKQKNDLSTIIAPSVIFTQGFATSGLLTEMHQ 123
++F +WG +FY V K D++ +I P I +L E HQ
Sbjct: 183 ILFKTWGV*LFYRVLLTSAPKKDVTNVINPLRITNLENLLLMVLKECHQ 37
>TC85323 similar to PIR|T06476|T06476 ppf-1 protein - garden pea, partial
(29%)
Length = 632
Score = 27.3 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -2
Query: 74 SLIFLSWGFSIFYMVPRFKKQKNDL----STIIAPSVIFTQGFATSGL 117
+ FLS F+ + P F +NDL + II P+ T GFA L
Sbjct: 202 NFFFLSSSFNCVNLSPSFSGLENDLLARPAVIIPPASSLTAGFAPPNL 59
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.329 0.142 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,850,396
Number of Sequences: 36976
Number of extensions: 192195
Number of successful extensions: 1527
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of query: 323
length of database: 9,014,727
effective HSP length: 96
effective length of query: 227
effective length of database: 5,465,031
effective search space: 1240562037
effective search space used: 1240562037
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)
Description of BAB33244.1