TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33192.1	34 aa
         (34 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC89431 SP|P34833|PSBM_PEA Photosystem II reaction center M prot...    64  1e-11

>TC89431 SP|P34833|PSBM_PEA Photosystem II reaction center M protein
           (PSII-M). {Lotus japonicus}, partial (97%)
          Length = 925

 Score = 63.9 bits (154), Expect = 1e-11
 Identities = 33/34 (97%), Positives = 34/34 (99%)
 Frame = +1

Query: 1   MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
           MEVNILAFIATALFILVPTAFLLIIYVKTVSQS+
Sbjct: 217 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSN 318


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.334    0.144    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 682,978
Number of Sequences: 36976
Number of extensions: 3182
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of query: 34
length of database: 9,014,727
effective HSP length: 10
effective length of query: 24
effective length of database: 8,644,967
effective search space: 207479208
effective search space used: 207479208
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.6 bits)