BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33188.1 100 aa
(100 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC92446 similar to SP|Q9BBT3|RR14_LOTJA Chloroplast 30S ribosoma... 121 4e-29
TC87009 homologue to SP|P58385|PSAB_LOTJA Photosystem I P700 chl... 50 1e-07
TC78674 similar to PIR|T46057|T46057 60S RIBOSOMAL PROTEIN-like ... 30 0.12
TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown prot... 28 0.57
BQ144380 similar to GP|1185397|gb|A SH3 domain binding protein {... 28 0.57
TC81192 similar to PIR|E96841|E96841 hypothetical protein F23A5.... 28 0.75
TC81690 similar to PIR|G96711|G96711 unknown protein 92941-8866... 27 1.3
TC84335 weakly similar to GP|21741678|emb|CAD40580. oj000126_13.... 27 1.3
AW690294 similar to PIR|C84752|C84 hypothetical protein At2g3409... 27 1.7
AW257424 similar to GP|14334440|gb unknown protein {Arabidopsis ... 26 2.2
TC76631 homologue to GP|18033654|gb|AAL57201.1 putative nodule m... 26 2.2
TC76630 homologue to GP|18033654|gb|AAL57201.1 putative nodule m... 26 2.2
TC93386 similar to GP|21555769|gb|AAM63930.1 unknown {Arabidopsi... 25 3.7
TC88253 weakly similar to GP|15810597|gb|AAL07186.1 unknown prot... 25 3.7
TC93797 similar to PIR|A84808|A84808 hypothetical protein At2g38... 25 3.7
TC77809 similar to GP|6136832|dbj|BAA85821.1 CS-IAA2 {Cucumis sa... 25 3.7
TC81489 weakly similar to GP|15982866|gb|AAL09780.1 At1g27210/T7... 25 4.9
TC88034 25 6.3
TC81638 homologue to GP|10177686|dbj|BAB11012. emb|CAB62594.1~ge... 25 6.3
TC77607 similar to GP|15450721|gb|AAK96632.1 AT3g57890/T10K17_10... 25 6.3
>TC92446 similar to SP|Q9BBT3|RR14_LOTJA Chloroplast 30S ribosomal protein
S14. {Lotus japonicus}, partial (64%)
Length = 202
Score = 121 bits (304), Expect = 4e-29
Identities = 57/65 (87%), Positives = 60/65 (91%)
Frame = +1
Query: 36 SLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLREMVHECLLPGA 95
+LSEKW+I GKLE+LPRNSAPTRL RRCFSTGRPRANYRDFGLS H LREMVHE LLPGA
Sbjct: 7 ALSEKWEIQGKLEALPRNSAPTRLRRRCFSTGRPRANYRDFGLSRHILREMVHEGLLPGA 186
Query: 96 TRSSW 100
TRSSW
Sbjct: 187 TRSSW 201
>TC87009 homologue to SP|P58385|PSAB_LOTJA Photosystem I P700 chlorophyll A
apoprotein A2 (PsaB) (PSI-B). {Lotus japonicus}, partial
(56%)
Length = 1445
Score = 50.1 bits (118), Expect = 1e-07
Identities = 24/26 (92%), Positives = 25/26 (95%)
Frame = +1
Query: 1 MARKSLIQREKKRQKLEQKYHLIRRS 26
MA KSLI+REKKRQKLEQKYHLIRRS
Sbjct: 1366 MATKSLIEREKKRQKLEQKYHLIRRS 1443
>TC78674 similar to PIR|T46057|T46057 60S RIBOSOMAL PROTEIN-like -
Arabidopsis thaliana, complete
Length = 620
Score = 30.4 bits (67), Expect = 0.12
Identities = 20/63 (31%), Positives = 31/63 (48%)
Frame = +3
Query: 7 IQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFST 66
IQRE R++ E++ + +S K+ P K HG ++S P ++ T LHR
Sbjct: 12 IQRECVRERGEEEDEVQSKSFKQ-----PPKESKGAFHGPIKSPPCDNERTTLHRSPIQI 176
Query: 67 GRP 69
RP
Sbjct: 177QRP 185
>TC91923 weakly similar to GP|1946369|gb|AAB63087.1| unknown protein
{Arabidopsis thaliana}, partial (14%)
Length = 1129
Score = 28.1 bits (61), Expect = 0.57
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = -1
Query: 23 IRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHT 82
+ SSK+EIS S+ + +K +L LP + L T R ++ F LS T
Sbjct: 427 LHASSKEEISCTCSICKSFKWRSRLPILPSLEFTSSLSE---PTSTLRLSFSSFKLSRLT 257
Query: 83 LREMVHECLLPGATRSSW 100
LR + L + S+W
Sbjct: 256 LRSFMLFSLCSISAFSNW 203
>BQ144380 similar to GP|1185397|gb|A SH3 domain binding protein {Rattus
norvegicus}, partial (12%)
Length = 1269
Score = 28.1 bits (61), Expect = 0.57
Identities = 17/51 (33%), Positives = 23/51 (44%)
Frame = -1
Query: 24 RRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPRANYR 74
RRS S++P LS H L +LP ++ RL C+S P R
Sbjct: 882 RRSPPLTASRLPLLSTSHHRHSLLPTLPSSAIHFRLLSICYSPHTPSTRAR 730
>TC81192 similar to PIR|E96841|E96841 hypothetical protein F23A5.23
[imported] - Arabidopsis thaliana, partial (28%)
Length = 1329
Score = 27.7 bits (60), Expect = 0.75
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 9 REKKRQKLEQ--KYHLIRRSSKKEISKVPSLSEKWK 42
++KK +K+++ K I SKK+ +K+ SL KWK
Sbjct: 252 KKKKNRKMQEWWKEEHIAELSKKKSNKLKSLQTKWK 359
>TC81690 similar to PIR|G96711|G96711 unknown protein 92941-88668 [imported]
- Arabidopsis thaliana, partial (15%)
Length = 1659
Score = 26.9 bits (58), Expect = 1.3
Identities = 9/42 (21%), Positives = 23/42 (54%)
Frame = +1
Query: 19 KYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLH 60
K + R + ++ P L+++W ++ KL+++ + +LH
Sbjct: 1024 KNYCKRMQLSRRVTGTPQLTQRWSVYEKLQNISTHGDYQKLH 1149
>TC84335 weakly similar to GP|21741678|emb|CAD40580. oj000126_13.2 {Oryza
sativa}, partial (39%)
Length = 678
Score = 26.9 bits (58), Expect = 1.3
Identities = 25/67 (37%), Positives = 33/67 (48%), Gaps = 1/67 (1%)
Frame = +1
Query: 11 KKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPR 70
KKRQ +K R SKK+ ++PS S G + S + T LH CFST P
Sbjct: 16 KKRQHENRKSQAGREVSKKD*IQIPSSSILMATLGGISSSLLSHYKT-LH-FCFSTSLPS 189
Query: 71 AN-YRDF 76
N ++DF
Sbjct: 190*NHFQDF 210
>AW690294 similar to PIR|C84752|C84 hypothetical protein At2g34090
[imported] - Arabidopsis thaliana, partial (34%)
Length = 696
Score = 26.6 bits (57), Expect = 1.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 47 LESLPRNSAPTRLHRRCFS 65
+ S+P S+P R HRRC+S
Sbjct: 6 MASIPIPSSPNRNHRRCYS 62
>AW257424 similar to GP|14334440|gb unknown protein {Arabidopsis thaliana},
partial (26%)
Length = 612
Score = 26.2 bits (56), Expect = 2.2
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = +3
Query: 34 VPSLSEKWKIHGKLESLPRNSAPTRLHR 61
+PSL+ ++ HG ++L RN +LH+
Sbjct: 381 LPSLNHFYQTHGSRQNLQRNCLQVQLHQ 464
>TC76631 homologue to GP|18033654|gb|AAL57201.1 putative nodule membrane
protein {Medicago sativa}, partial (43%)
Length = 948
Score = 26.2 bits (56), Expect = 2.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 36 SLSEKWKIHGKLESL 50
S+ +KW+ HGKL+SL
Sbjct: 584 SIMKKWEFHGKLQSL 628
>TC76630 homologue to GP|18033654|gb|AAL57201.1 putative nodule membrane
protein {Medicago sativa}, complete
Length = 2605
Score = 26.2 bits (56), Expect = 2.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 36 SLSEKWKIHGKLESL 50
S+ +KW+ HGKL+SL
Sbjct: 1560 SIMKKWEFHGKLQSL 1604
>TC93386 similar to GP|21555769|gb|AAM63930.1 unknown {Arabidopsis
thaliana}, partial (56%)
Length = 495
Score = 25.4 bits (54), Expect = 3.7
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = +1
Query: 3 RKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKI 43
RK + REKK ++ IRRS+KK SE W++
Sbjct: 130 RKKKV*REKKNEEETSSCEKIRRSTKK-------CSEIWRV 231
>TC88253 weakly similar to GP|15810597|gb|AAL07186.1 unknown protein
{Arabidopsis thaliana}, partial (51%)
Length = 1122
Score = 25.4 bits (54), Expect = 3.7
Identities = 19/48 (39%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 KSLIQ--REKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLES 49
KS +Q R KKR+K +K R+ SKK+ K K K+ KL+S
Sbjct: 676 KSKLQL*RRKKRRKKRRKKKRKRKRSKKKRKKKVKKKTKEKMIIKLKS 819
>TC93797 similar to PIR|A84808|A84808 hypothetical protein At2g38680
[imported] - Arabidopsis thaliana, partial (25%)
Length = 630
Score = 25.4 bits (54), Expect = 3.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 10 EKKRQKLEQKYHLIRRSSKKEISKVPSLSEKW--KIHGKL 47
+ KRQ+L + YH + S + + L E+W K HG L
Sbjct: 389 DAKRQQLYEHYHPLEFSPTIGLEEKRKLMEEWWGKTHGLL 508
>TC77809 similar to GP|6136832|dbj|BAA85821.1 CS-IAA2 {Cucumis sativus},
partial (57%)
Length = 1500
Score = 25.4 bits (54), Expect = 3.7
Identities = 13/42 (30%), Positives = 18/42 (41%)
Frame = -3
Query: 9 REKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESL 50
R K+ K S + ISK+ + KWK +LE L
Sbjct: 193 RHHNEYKVSNKKKSFNLSIPRRISKIKRVKRKWKRRERLEIL 68
>TC81489 weakly similar to GP|15982866|gb|AAL09780.1 At1g27210/T7N9_27
{Arabidopsis thaliana}, partial (26%)
Length = 698
Score = 25.0 bits (53), Expect = 4.9
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Frame = -2
Query: 7 IQREKKRQKLEQKYHLIRRSSKKEISKVP-SLSEKWKI----HGKLESLPRNS----APT 57
++R +K+ K+++++ RS +++P ++SE++K GK+ L RNS PT
Sbjct: 640 LRRSRKQDKVQRQF---ARSVLAR*TELPITVSERYKTVAS*RGKI-MLKRNSHTRIGPT 473
Query: 58 -------RLHRRCFSTGRPRANYRDF 76
L R STG+ +A YR+F
Sbjct: 472 SRYHEAVELRWRGSSTGKEKACYREF 395
>TC88034
Length = 771
Score = 24.6 bits (52), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (64%)
Frame = +3
Query: 46 KLESLPRNSAPTRLHRRCFSTGR 68
++E+LP +PT +H STGR
Sbjct: 144 EVETLPATYSPTHIHMTLPSTGR 212
>TC81638 homologue to GP|10177686|dbj|BAB11012.
emb|CAB62594.1~gene_id:MUL8.6~similar to unknown protein
{Arabidopsis thaliana}, partial (6%)
Length = 1585
Score = 24.6 bits (52), Expect = 6.3
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +3
Query: 37 LSEKWKIHGKLESLPRNSAPTRLHRRC 63
LS++WKIH + LP+ P R C
Sbjct: 1032 LSKRWKIH--QDQLPKPKLPRRQELHC 1106
>TC77607 similar to GP|15450721|gb|AAK96632.1 AT3g57890/T10K17_100
{Arabidopsis thaliana}, partial (91%)
Length = 2153
Score = 24.6 bits (52), Expect = 6.3
Identities = 14/23 (60%), Positives = 15/23 (64%)
Frame = -3
Query: 31 ISKVPSLSEKWKIHGKLESLPRN 53
ISKV L KW+IHG LE RN
Sbjct: 1074 ISKV--LRCKWQIHGNLEP*QRN 1012
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,440,405
Number of Sequences: 36976
Number of extensions: 44800
Number of successful extensions: 273
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 100
length of database: 9,014,727
effective HSP length: 76
effective length of query: 24
effective length of database: 6,204,551
effective search space: 148909224
effective search space used: 148909224
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)
Description of BAB33188.1