BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33185.1 126 aa
(126 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79065 homologue to SP|P12204|YCF3_TOBAC Photosystem I assembly... 160 9e-41
TC77416 similar to GP|18139887|gb|AAL60196.1 O-linked N-acetyl g... 36 0.003
TC87394 similar to GP|3582779|gb|AAC69180.1| peroxisomal targeti... 33 0.022
TC92121 weakly similar to GP|10177302|dbj|BAB10563. gene_id:MDC1... 30 0.24
TC88971 similar to SP|P92792|OM20_SOLTU Mitochondrial import rec... 28 0.93
TC86012 homologue to PIR|T00795|T00795 26S proteasome regulatory... 27 2.1
TC87373 homologue to PIR|A43350|A43350 formate--tetrahydrofolate... 27 2.7
TC82845 similar to GP|18376387|emb|CAD21276. putative protein {N... 26 3.5
TC90262 similar to GP|18252241|gb|AAL61953.1 unknown protein {Ar... 26 4.6
AL385301 similar to OMNI|PG0405 hypothetical protein {Porphyromo... 25 6.0
TC90394 similar to GP|1403522|emb|CAA40474.1 chitinase {Phaseolu... 25 6.0
TC87053 similar to PIR|T52454|T52454 ATP-dependent Clp proteinas... 25 7.8
TC76532 weakly similar to SP|Q9BBN6|YCF1_LOTJA Hypothetical 214.... 25 7.8
CA990933 homologue to PIR|A71410|A714 hypothetical protein - Ara... 25 7.8
TC82766 similar to GP|3128183|gb|AAC16087.1| unknown protein {Ar... 25 7.8
>TC79065 homologue to SP|P12204|YCF3_TOBAC Photosystem I assembly protein
ycf3. [Common tobacco] {Nicotiana tabacum}, partial (70%)
Length = 1301
Score = 160 bits (406), Expect = 9e-41
Identities = 75/76 (98%), Positives = 76/76 (99%)
Frame = +3
Query: 1 MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60
MSAQSEGNYAEALQNYYEAMRLE+DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 1053 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 1232
Query: 61 PFLPQAFNNMAVICHY 76
PFLPQAFNNMAVICHY
Sbjct: 1233 PFLPQAFNNMAVICHY 1280
>TC77416 similar to GP|18139887|gb|AAL60196.1 O-linked N-acetyl glucosamine
transferase {Arabidopsis thaliana}, partial (94%)
Length = 3465
Score = 36.2 bits (82), Expect = 0.003
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 4 QSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFL 63
+ +GNYA+A+ Y E +R++ D L N G + G + A++ Y RA+ P +
Sbjct: 1442 KQQGNYADAISCYNEVLRIDPLAADG---LVNRGNTYKEIGRVSDAIQDYIRAITVRPTM 1612
Query: 64 PQAFNNMA 71
+A N+A
Sbjct: 1613 AEAHANLA 1636
Score = 30.0 bits (66), Expect = 0.24
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +2
Query: 7 GNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 66
G EA+Q Y + + L+ + L N+G I+ A YY L L
Sbjct: 1247 GRVEEAIQCYNQCLSLQPN---HPQALTNLGNIYMEWNMVAAAASYYKATLNVTTGLSAP 1417
Query: 67 FNNMAVICHYRGEQA 81
+NN+A+I +G A
Sbjct: 1418 YNNLAIIYKQQGNYA 1462
Score = 25.0 bits (53), Expect = 7.8
Identities = 25/93 (26%), Positives = 38/93 (39%), Gaps = 20/93 (21%)
Frame = +2
Query: 43 NGEHTKALEYYFRALERNPFLPQAFNNMAVI---------CHYRGEQAIR------QGDS 87
+G + KALE+ ERNP + I C + E+A+R +
Sbjct: 428 SGSYKKALEHSNTVYERNPLRTDNLLLLGAIYYQLHDFDMCVAKNEEALRIEPHFAECYG 607
Query: 88 EIAESW-----FDQAAEYWKQAIALTPGNYIEA 115
+A +W D A Y+ AI L P N+ +A
Sbjct: 608 NMANAWKEKGNIDLAIRYYLIAIELRP-NFADA 703
>TC87394 similar to GP|3582779|gb|AAC69180.1| peroxisomal targeting sequence
1 receptor {Nicotiana tabacum}, partial (65%)
Length = 1656
Score = 33.5 bits (75), Expect = 0.022
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +3
Query: 10 AEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 69
A+A+ Y +A+ L+ + Y R++ N+G+ + + G + +++ YY RAL NP A+
Sbjct: 927 ADAIAAYQQALDLKPN-YVRAWA--NMGISYANQGMYDESIRYYVRALAMNPKAENAWQY 1097
Query: 70 MAV 72
+ +
Sbjct: 1098LRI 1106
>TC92121 weakly similar to GP|10177302|dbj|BAB10563.
gene_id:MDC12.18~pir||F69210~similar to unknown protein
{Arabidopsis thaliana}, partial (76%)
Length = 845
Score = 30.0 bits (66), Expect = 0.24
Identities = 24/99 (24%), Positives = 47/99 (47%)
Frame = +3
Query: 1 MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60
+S Q ++A + Y A+ L + IL N+G+++ ++ A + ++LE
Sbjct: 276 VSLQLSEEQSQAEEVYKWALSLATKQ-EAHAILSNMGILYRQQKKYELAKAMFTKSLELQ 452
Query: 61 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAE 99
P AFNN+ ++ I +G E A+ F++A +
Sbjct: 453 PGYAPAFNNLGLV-------FIAEGLLEEAKHCFEKALQ 548
>TC88971 similar to SP|P92792|OM20_SOLTU Mitochondrial import receptor
subunit TOM20 (Translocase of outer membrane 20 kDa
subunit). [Potato], partial (97%)
Length = 956
Score = 28.1 bits (61), Expect = 0.93
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = +3
Query: 80 QAIRQGDSEIAESWFDQAAEYWKQAIALTPGN 111
QA D + A+ +FD+AA Y++QAI P N
Sbjct: 333 QAFLNPDVDEAKVYFDKAAVYFQQAIDEDPSN 428
>TC86012 homologue to PIR|T00795|T00795 26S proteasome regulatory subunit
[imported] - Arabidopsis thaliana, partial (59%)
Length = 2134
Score = 26.9 bits (58), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 26 PYDRSYILYNIGLIHTSNGEHTK 48
PY LY +GLIH ++GE K
Sbjct: 1500 PYSEGGALYALGLIHANHGEGIK 1568
>TC87373 homologue to PIR|A43350|A43350 formate--tetrahydrofolate ligase (EC
6.3.4.3) - spinach, partial (67%)
Length = 1591
Score = 26.6 bits (57), Expect = 2.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 34 YNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIC 74
YN +IH N K Y FR L + P A N +IC
Sbjct: 1502 YNN*IIHIRNDNINKNYTYLFRYLFHSYRSPAAKENAEIIC 1380
>TC82845 similar to GP|18376387|emb|CAD21276. putative protein {Neurospora
crassa}, partial (17%)
Length = 959
Score = 26.2 bits (56), Expect = 3.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 69 NMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQN 117
N+++ H RG IR E W + WK+ + L P ++ +N
Sbjct: 851 NLSIPRHVRGRFFIR------LEPWLPRIFPLWKEMLGLAPSLSVDKRN 723
>TC90262 similar to GP|18252241|gb|AAL61953.1 unknown protein {Arabidopsis
thaliana}, partial (47%)
Length = 1236
Score = 25.8 bits (55), Expect = 4.6
Identities = 15/53 (28%), Positives = 24/53 (44%)
Frame = +3
Query: 3 AQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFR 55
A + G +A + Y A+RLE + L + +I NG+ LE Y +
Sbjct: 399 ASNSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 557
>AL385301 similar to OMNI|PG0405 hypothetical protein {Porphyromonas
gingivalis W83}, partial (32%)
Length = 475
Score = 25.4 bits (54), Expect = 6.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 32 ILYNIGLIHTSNGEHTKALEYYFRALERNPF 62
ILY IG++ N + L ++FR++E+N +
Sbjct: 274 ILYFIGIVALLNVAISVPLYFHFRSIEQNSY 366
>TC90394 similar to GP|1403522|emb|CAA40474.1 chitinase {Phaseolus
vulgaris}, partial (91%)
Length = 1066
Score = 25.4 bits (54), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 27 YDRSYILYNIGLIHTSNGEHT 47
Y ++ YNI L HT N EH+
Sbjct: 114 YHNIHVRYNISLPHTHNFEHS 52
>TC87053 similar to PIR|T52454|T52454 ATP-dependent Clp proteinase (EC
3.4.21.-) catalytic chain P2 [imported] - Arabidopsis
thaliana, partial (74%)
Length = 1135
Score = 25.0 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -3
Query: 24 VDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 76
++P S+ +IG +SNG H Y+F L P + N +C Y
Sbjct: 374 INPLPSSFTRCSIGDSRSSNGHHPNLCPYWF--LVSIPEIKNLVNFTKKLCVY 222
>TC76532 weakly similar to SP|Q9BBN6|YCF1_LOTJA Hypothetical 214.8 kDa
protein ycf1. {Lotus japonicus}, partial (21%)
Length = 4509
Score = 25.0 bits (53), Expect = 7.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 8 NYAEALQNYYEAMRLEVDPYDRSYILYNIG 37
NY E + Y ++D +DR ++L IG
Sbjct: 487 NYPEFDNSNYPEFEQKIDQFDRKFLLTEIG 576
>CA990933 homologue to PIR|A71410|A714 hypothetical protein - Arabidopsis
thaliana, partial (6%)
Length = 761
Score = 25.0 bits (53), Expect = 7.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 30 SYILYNIGLIHTSNG--EHTKALEYYFRALE 58
S ILY+ LIHTS G +T A+ +Y + E
Sbjct: 381 SNILYSTNLIHTSKGFLLYTTAIVHYSKTHE 289
>TC82766 similar to GP|3128183|gb|AAC16087.1| unknown protein {Arabidopsis
thaliana}, partial (10%)
Length = 690
Score = 25.0 bits (53), Expect = 7.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 45 EHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAESW 93
E K +E F+A + + Q +N I ++ GEQ + + E ESW
Sbjct: 290 EQMKRIEAIFKAKQNQKW--QQCHNPIQITNFDGEQLTKTDNVEDDESW 430
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,905,374
Number of Sequences: 36976
Number of extensions: 46858
Number of successful extensions: 227
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of query: 126
length of database: 9,014,727
effective HSP length: 85
effective length of query: 41
effective length of database: 5,871,767
effective search space: 240742447
effective search space used: 240742447
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)
Description of BAB33185.1