TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33240.1	155 aa
         (155 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12922 ribosomal protein S7 [Lotus japonicus]                        303  1e-83
TC16742 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protein...    62  4e-11
TC16511 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protein...    60  2e-10
CB829587                                                               27  2.0
BP029513                                                               26  3.5
AV780663                                                               26  3.5

>TC12922 ribosomal protein S7 [Lotus japonicus]
          Length = 468

 Score =  303 bits (775), Expect = 1e-83
 Identities = 155/155 (100%), Positives = 155/155 (100%)
 Frame = +1

Query: 1   MSRRGTAEKKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEKKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEKKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 180

Query: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 181 VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 360

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 361 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 465


>TC16742 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protein S5
           (Fragment), partial (98%)
          Length = 934

 Score = 62.0 bits (149), Expect = 4e-11
 Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
 Frame = +1

Query: 21  RLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80
           RL N L+     +GKK +A +II  AM+ I   T+ NP+ V+  A+    P     A R+
Sbjct: 292 RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGP--REDATRI 465

Query: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 133
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 466 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 645

Query: 134 AIRKKEETHRMAEANR 149
           AI+KK+E  R+A+ANR
Sbjct: 646 AIKKKDEIERVAKANR 693


>TC16511 homologue to UP|RS5_CICAR (O65731) 40S ribosomal protein S5
           (Fragment), complete
          Length = 885

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
 Frame = +3

Query: 21  RLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80
           RL N L+     +GKK +A +II  AM+ I   T+ NP+ V+  A+    P     A R+
Sbjct: 249 RLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGP--REDATRI 422

Query: 81  G--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD-- 133
           G  G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  
Sbjct: 423 GSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSY 602

Query: 134 AIRKKEETHRMAEANR 149
           AI+KK+E  R+A+A+R
Sbjct: 603 AIKKKDEIERVAKAHR 650


>CB829587 
          Length = 548

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 15  DPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKI 50
           +P Y++RL   L  + L+  +KSL Y+I+Y   ++I
Sbjct: 278 EPEYKHRLWYQLFQKKLRLLQKSLLYRILYH*FQQI 171


>BP029513 
          Length = 233

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 62  LRQAIRGVTPDIAVKARRVGGSTHQVPIEI 91
           +R+  R ++ D A KA +VGGS+H + +E+
Sbjct: 166 MRERARALS-DAAKKAVQVGGSSHNIIVEL 80


>AV780663 
          Length = 568

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 23/81 (28%), Positives = 39/81 (47%)
 Frame = +1

Query: 7   AEKKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAI 66
           A   TA +  +  NRL N+ V   + HGK +L  +I+ +    I  +   +  S+ R+  
Sbjct: 121 AASATAPAGSLDPNRLRNVAVIAHVDHGKTTLMDRILRQCGADIPHERAMDSNSLERE-- 294

Query: 67  RGVTPDIAVKARRVGGSTHQV 87
           RG+T  IA K   V    +++
Sbjct: 295 RGIT--IASKVTTVSWKENEL 351


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,843,855
Number of Sequences: 28460
Number of extensions: 16606
Number of successful extensions: 76
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)