TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33231.1	134 aa
         (134 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14603 UP|RR8_LOTJA (Q9BBQ1) Chloroplast 30S ribosomal protein ...   267  4e-73
TC18536 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protei...    43  2e-05
TC11790 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protei...    42  3e-05
TC10950 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protei...    42  3e-05
TC9874 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, partia...    27  1.2
AV768209                                                               26  2.0
TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alph...    25  4.5
TC8536 weakly similar to UP|AAR92224 (AAR92224) Cystatin, partia...    24  10.0
BP061060                                                               24  10.0

>TC14603 UP|RR8_LOTJA (Q9BBQ1) Chloroplast 30S ribosomal protein S8,
           complete
          Length = 609

 Score =  267 bits (683), Expect = 4e-73
 Identities = 134/134 (100%), Positives = 134/134 (100%)
 Frame = +3

Query: 1   MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSFLV 60
           MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSFLV
Sbjct: 84  MGKDTIADIITSIRNADMNRKRTVQIPFTNITENTVKILLREGFIENVRKHRESDKSFLV 263

Query: 61  LTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREA 120
           LTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREA
Sbjct: 264 LTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREA 443

Query: 121 RLEKIGGEVLCYIW 134
           RLEKIGGEVLCYIW
Sbjct: 444 RLEKIGGEVLCYIW 485


>TC18536 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protein S15A,
           complete
          Length = 556

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 39/133 (29%), Positives = 64/133 (47%), Gaps = 6/133 (4%)
 Frame = +2

Query: 8   DIITSIRNADMNRKRTVQI-PFTNITENTVKILLREGFI---ENVRKHRESDKSFLVLTL 63
           D + S+ NA+   KR V I P + +    + ++ + G+I   E V  HR      +V+ L
Sbjct: 62  DALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGK---IVVEL 232

Query: 64  RYRRNTKG--SYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREAR 121
             R N  G  S +  + +K I     R+  + Q         G ++L+TS GIM   EAR
Sbjct: 233 NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--------FGYIVLTTSAGIMDHEEAR 388

Query: 122 LEKIGGEVLCYIW 134
            + +GG+VL + +
Sbjct: 389 RKNVGGKVLGFFY 427


>TC11790 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protein S15A,
           complete
          Length = 474

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 39/133 (29%), Positives = 64/133 (47%), Gaps = 6/133 (4%)
 Frame = +1

Query: 8   DIITSIRNADMNRKRTVQI-PFTNITENTVKILLREGFI---ENVRKHRESDKSFLVLTL 63
           D + S+ NA+   KR V I P + +    + ++ + G+I   E V  HR      +V+ L
Sbjct: 109 DALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRAGK---IVVEL 279

Query: 64  RYRRNTKG--SYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREAR 121
             R N  G  S +  + +K I     R+  + Q         G ++L+TS GIM   EAR
Sbjct: 280 NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--------FGYIVLTTSAGIMDHEEAR 435

Query: 122 LEKIGGEVLCYIW 134
            + +GG+VL + +
Sbjct: 436 RKNVGGKVLGFFY 474


>TC10950 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protein S15A,
           complete
          Length = 569

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
 Frame = +2

Query: 8   DIITSIRNADMNRKRTVQI-PFTNITENTVKILLREGFI---ENVRKHRESDKSFLVLTL 63
           D + S+ NA+   KR V I P + +    + ++   G+I   E V  HR      +V+ L
Sbjct: 80  DALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQHHGYIGEFEYVDDHRAGK---IVVEL 250

Query: 64  RYRRNTKG--SYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREAR 121
             R N  G  S +  + +K I     R+  + Q         G ++L+TS GIM   EAR
Sbjct: 251 NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQ--------FGYIVLTTSAGIMDHEEAR 406

Query: 122 LEKIGGEVLCYIW 134
            + +GG+VL + +
Sbjct: 407 RKNVGGKVLGFFY 445


>TC9874 similar to UP|Q8VZJ1 (Q8VZJ1) AT5g09790/F17I14_20, partial (22%)
          Length = 546

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
 Frame = +3

Query: 44  FIENVRKH-RESDKSFLVLTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNY 93
           FI  +  H +E  K     ++RY  N  G  + FL   R    G R+YY+Y
Sbjct: 57  FINGIHNHTQEGKKKQNCKSVRY--NVDGQSRVFLVATRDIAKGERLYYDY 203


>AV768209 
          Length = 422

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 20/75 (26%), Positives = 37/75 (48%)
 Frame = -3

Query: 58  FLVLTLRYRRNTKGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTD 117
           F+ +TL     +K S +T ++L ++STP      +   +  +LGG+ + +  T R   + 
Sbjct: 261 FISVTL----GSKESQETPMHLIKVSTPSKDTQCSDAVLMNLLGGVSLTVFYTGRS**S- 97

Query: 118 REARLEKIGGEVLCY 132
             ARL+     V+ Y
Sbjct: 96  -SARLQPWSSAVIVY 55


>TC18284 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alpha-5
          chain, partial (44%)
          Length = 739

 Score = 25.0 bits (53), Expect = 4.5
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 59 LVLTLRYRRNTKGSYKTF 76
          LV  LRYR N KGSY  F
Sbjct: 19 LVXRLRYRINIKGSYFLF 72


>TC8536 weakly similar to UP|AAR92224 (AAR92224) Cystatin, partial (69%)
          Length = 543

 Score = 23.9 bits (50), Expect = 10.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 85  PGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREARLEKIGGE 128
           P L I   +++I  +L    + +L   RGI TD+ + L + GGE
Sbjct: 234 P*LLIILGHREIGDLLNVRVVEVLD--RGIATDKSSLLPESGGE 109


>BP061060 
          Length = 311

 Score = 23.9 bits (50), Expect = 10.0
 Identities = 16/63 (25%), Positives = 31/63 (48%)
 Frame = -1

Query: 70  KGSYKTFLNLKRISTPGLRIYYNYQKIPRILGGMGIVILSTSRGIMTDREARLEKIGGEV 129
           K + +T ++L ++STP      +   +  +LGG+ + +  T R   +   ARL+     V
Sbjct: 212 KKATETPMHLIKVSTPSKDTQCSDAVLMNLLGGVSLTVFYTGRS**S--SARLQPWSSAV 39

Query: 130 LCY 132
           + Y
Sbjct: 38  IVY 30


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.141    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,756,671
Number of Sequences: 28460
Number of extensions: 18041
Number of successful extensions: 84
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of query: 134
length of database: 4,897,600
effective HSP length: 81
effective length of query: 53
effective length of database: 2,592,340
effective search space: 137394020
effective search space used: 137394020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)