BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33196.1 1332 aa
(1332 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15312 UP|RPOD_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'... 2248 0.0
TC11776 30 1.9
BP043034 30 2.5
TC10848 weakly similar to UP|C883_ARATH (O23051) Cytochrome P450... 29 4.3
TC9114 similar to UP|Q9SE85 (Q9SE85) Casein kinase I-like protei... 29 4.3
TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%) 29 5.6
BP041257 28 7.3
TC18902 weakly similar to GB|AAP37786.1|30725528|BT008427 At1g51... 28 7.3
BP048030 28 7.3
>TC15312 UP|RPOD_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain
(PEP) (Plastid-encoded RNA polymerase beta'' subunit)
(RNA polymerase beta'' subunit) , partial (84%)
Length = 3522
Score = 2248 bits (5825), Expect = 0.0
Identities = 1125/1125 (100%), Positives = 1125/1125 (100%)
Frame = +3
Query: 208 EVVQHIVVRRTDCGTVRGISVNTRNRMMSERILIQTLIGRVLADDIYIGSRCIVVRNQDI 267
EVVQHIVVRRTDCGTVRGISVNTRNRMMSERILIQTLIGRVLADDIYIGSRCIVVRNQDI
Sbjct: 3 EVVQHIVVRRTDCGTVRGISVNTRNRMMSERILIQTLIGRVLADDIYIGSRCIVVRNQDI 182
Query: 268 GIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLVELGEAVGIIAGQSIG 327
GIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLVELGEAVGIIAGQSIG
Sbjct: 183 GIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLVELGEAVGIIAGQSIG 362
Query: 328 EPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYV 387
EPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYV
Sbjct: 363 EPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYV 542
Query: 388 TIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNLKEKVRKHIFSDSEGE 447
TIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNLKEKVRKHIFSDSEGE
Sbjct: 543 TIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNLKEKVRKHIFSDSEGE 722
Query: 448 MHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLLKDQDQMSTHSLPTAK 507
MHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLLKDQDQMSTHSLPTAK
Sbjct: 723 MHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLLKDQDQMSTHSLPTAK 902
Query: 508 RNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM 567
RNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM
Sbjct: 903 RNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM 1082
Query: 568 PDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREF 627
PDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREF
Sbjct: 1083 PDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREF 1262
Query: 628 KPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKK 687
KPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKK
Sbjct: 1263 KPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKK 1442
Query: 688 KIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKY 747
KIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKY
Sbjct: 1443 KIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTTKKKY 1622
Query: 748 FVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLV 807
FVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLV
Sbjct: 1623 FVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLV 1802
Query: 808 RTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGL 867
RTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGL
Sbjct: 1803 RTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGL 1982
Query: 868 ISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPF 927
ISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPF
Sbjct: 1983 ISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPF 2162
Query: 928 NNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ 987
NNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ
Sbjct: 2163 NNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ 2342
Query: 988 LNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQF 1047
LNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQF
Sbjct: 2343 LNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQF 2522
Query: 1048 ICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILV 1107
ICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILV
Sbjct: 2523 ICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILV 2702
Query: 1108 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGA 1167
TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGA
Sbjct: 2703 TFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGA 2882
Query: 1168 ELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIG 1227
ELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIG
Sbjct: 2883 ELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIG 3062
Query: 1228 LLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLK 1287
LLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLK
Sbjct: 3063 LLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLK 3242
Query: 1288 GLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRGRN 1332
GLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRGRN
Sbjct: 3243 GLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRGRN 3377
>TC11776
Length = 612
Score = 30.4 bits (67), Expect = 1.9
Identities = 22/71 (30%), Positives = 35/71 (48%)
Frame = -3
Query: 819 EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 878
EK S + +++VEV T R FLR++ H+ Y+ K S + +YN + +
Sbjct: 607 EKISCMRVNRSTYVEVITV*ESRIFLRLESHSLHMEYVFKLKGNSRA---TYNSKRKQ*L 437
Query: 879 NPFFSIYKENI 889
N I K+NI
Sbjct: 436 NQNICILKQNI 404
>BP043034
Length = 537
Score = 30.0 bits (66), Expect = 2.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 698 IHFPGEIDKISQHSAILIPPEMVKKKNSKES 728
IH G+++K+ QHSA ++ ++ K+N K S
Sbjct: 210 IHEDGDVEKLLQHSARILLQKLSSKRNHKNS 118
>TC10848 weakly similar to UP|C883_ARATH (O23051) Cytochrome P450 88A3 ,
partial (16%)
Length = 889
Score = 29.3 bits (64), Expect = 4.3
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = -3
Query: 356 SNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVK 415
++ KI +S P + P+ + ++D+Y + S+ ++N +I S +L+ YVK
Sbjct: 194 TSSKICLQRHSMSPKWQQTPKPSIVPFLDVYRLLNSSLSLYNKLISDVSLMLISISLYVK 15
>TC9114 similar to UP|Q9SE85 (Q9SE85) Casein kinase I-like protein
(Fragment), partial (52%)
Length = 1292
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 4/46 (8%)
Frame = +3
Query: 71 LVQDAEQQSLILEK----HHHYGNVHAVEKLRQSIEIWYATSEYLR 112
LVQ +SL+L+K HH H +E+ + IW SE LR
Sbjct: 933 LVQQHSGKSLVLQKVQLSHHRSTTEHPLEETHPT*RIWSQLSEVLR 1070
>TC14439 similar to UP|Q9FIC1 (Q9FIC1) Gb|AAF19567.1, partial (49%)
Length = 2120
Score = 28.9 bits (63), Expect = 5.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 282 PIFIRTPFTCRNTSWICRL 300
P+F+R FTC+ W CR+
Sbjct: 1559 PLFVRANFTCKKRLWGCRM 1615
>BP041257
Length = 478
Score = 28.5 bits (62), Expect = 7.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 939 EINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISS 981
E+ +FK +H I SL P ++ + S H +TH I S
Sbjct: 420 ELGEFKTSHIFLIHFSLFPFPISHHLLELLSKPHSLTHRLIHS 292
>TC18902 weakly similar to GB|AAP37786.1|30725528|BT008427 At1g51560
{Arabidopsis thaliana;}, partial (11%)
Length = 575
Score = 28.5 bits (62), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (71%)
Frame = -2
Query: 443 DSEGEMHWSTNIYHVSEF 460
D+EG++HW N++H F
Sbjct: 574 DNEGDLHWYNNLFHFRNF 521
>BP048030
Length = 323
Score = 28.5 bits (62), Expect = 7.3
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 342 GVFTGGTAEYVRSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTI 389
GV +G A RSPSN F ++ T P F C I LY +I
Sbjct: 59 GVPSGLVASQTRSPSNPTTSFISSANSLIVTSFPLPTFKCSIPLYFSI 202
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,661,169
Number of Sequences: 28460
Number of extensions: 322071
Number of successful extensions: 1601
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of query: 1332
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1231
effective length of database: 2,023,140
effective search space: 2490485340
effective search space used: 2490485340
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Description of BAB33196.1