TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33192.1	34 aa
         (34 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP459518 PSII low MW protein [Lotus japonicus]                         66  2e-12
TC19078 similar to UP|Q85FM6 (Q85FM6) Photosystem II protein M (...    30  0.15

>NP459518 PSII low MW protein [Lotus japonicus]
          Length = 105

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +1

Query: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
          MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD
Sbjct: 1  MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 102


>TC19078 similar to UP|Q85FM6 (Q85FM6) Photosystem II protein M (Fragment),
           partial (37%)
          Length = 603

 Score = 29.6 bits (65), Expect = 0.15
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 1   MEVNILAFIATALFILVPTAFLLIIYVKTVSQ 32
           M V   A++A  L  L+P AFL+I+Y++  S+
Sbjct: 203 MTVTFPAYLAIFLGTLIPVAFLIILYIQAESR 298


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.334    0.144    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 349,469
Number of Sequences: 28460
Number of extensions: 1495
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 34
length of database: 4,897,600
effective HSP length: 10
effective length of query: 24
effective length of database: 4,613,000
effective search space: 110712000
effective search space used: 110712000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 49 (23.5 bits)