BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33188.1 100 aa
(100 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC16135 UP|PSAB_LOTJA (P58385) Photosystem I P700 chlorophyll A ... 204 2e-54
AV420567 35 0.002
AV409008 29 0.11
TC9818 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, ... 28 0.25
BP060710 28 0.33
TC9077 27 0.43
BP042054 27 0.43
TC13619 similar to UP|Q9LFQ3 (Q9LFQ3) Transcriptional regulatory... 27 0.73
TC11948 26 1.3
TC14978 weakly similar to UP|Q7S392 (Q7S392) Predicted protein, ... 26 1.3
AV768278 26 1.3
TC11387 25 1.6
BP066303 25 2.1
TC15226 UP|O82459 (O82459) Rac GTPase activating protein 2 (Frag... 25 2.1
AV409152 25 2.1
AV780961 25 2.8
TC9902 similar to UP|BAD07483 (BAD07483) PDR-type ABC transporte... 25 2.8
TC11773 similar to UP|Q8LL12 (Q8LL12) EDS1, partial (11%) 25 2.8
AV764807 25 2.8
TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana ... 24 3.6
>TC16135 UP|PSAB_LOTJA (P58385) Photosystem I P700 chlorophyll A apoprotein A2
(PsaB) (PSI-B), complete
Length = 2647
Score = 204 bits (520), Expect = 2e-54
Identities = 99/100 (99%), Positives = 99/100 (99%)
Frame = +3
Query: 1 MARKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLH 60
MARKSLIQREKKRQKLEQKYHLIRRS KKEISKVPSLSEKWKIHGKLESLPRNSAPTRLH
Sbjct: 2334 MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLH 2513
Query: 61 RRCFSTGRPRANYRDFGLSGHTLREMVHECLLPGATRSSW 100
RRCFSTGRPRANYRDFGLSGHTLREMVHECLLPGATRSSW
Sbjct: 2514 RRCFSTGRPRANYRDFGLSGHTLREMVHECLLPGATRSSW 2633
>AV420567
Length = 285
Score = 35.4 bits (80), Expect = 0.002
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 9 REKKRQKLEQKYHLIRRSSKK--EISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFST 66
R+ KR+ L KY L R+ K + S +PS + K+ KL LPRNS+ R+ RC T
Sbjct: 109 RDHKRRLLAAKYELRRKLYKAFCKDSDLPS-DMRDKLRYKLSKLPRNSSFARVRNRCIFT 285
>AV409008
Length = 418
Score = 29.3 bits (64), Expect = 0.11
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = +1
Query: 23 IRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGR 68
+RRSS++ + K + + PR +P+R HRRC TGR
Sbjct: 64 LRRSSQQRLRKTSRIGLQ----------PRAISPSRHHRRCSRTGR 171
>TC9818 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, partial
(62%)
Length = 1162
Score = 28.1 bits (61), Expect = 0.25
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = -3
Query: 45 GKLESLPRNSAPTRLHRRCFS 65
G L L R AP+RL RRCFS
Sbjct: 1004 GGLPGLGRGRAPSRLPRRCFS 942
>BP060710
Length = 534
Score = 27.7 bits (60), Expect = 0.33
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 32 SKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPRANYRDF 76
S V + + L + +A RLH R FS+ P+ NY +F
Sbjct: 327 SSVGAARSSGSLLSNLAAFKSVAANPRLHHRLFSSEAPKKNYENF 193
>TC9077
Length = 745
Score = 27.3 bits (59), Expect = 0.43
Identities = 25/78 (32%), Positives = 32/78 (40%), Gaps = 23/78 (29%)
Frame = +2
Query: 36 SLSEKWKIHGKLESLPRN---SAPTRLH---------RRCFSTGRPRAN---------YR 74
S +WKIH + E+LPRN P R H R T RPR + +
Sbjct: 425 SRQARWKIHLR*EALPRNLDLHRPERHHLRRQLRETARESVCTYRPRRSGE*GYGVPQWL 604
Query: 75 DFGLSG--HTLREMVHEC 90
D+G G LR + EC
Sbjct: 605 DYGWEGG*RLLRAVSSEC 658
>BP042054
Length = 421
Score = 27.3 bits (59), Expect = 0.43
Identities = 16/56 (28%), Positives = 27/56 (47%), Gaps = 7/56 (12%)
Frame = -1
Query: 12 KRQKLEQKYHLIRRSSKKEISKVPSLS-------EKWKIHGKLESLPRNSAPTRLH 60
K Q+ Q + R S S+V S +W +HG +ES+ ++S+ +R H
Sbjct: 385 KAQESAQNEMIYRSPSGSASSRVHEFSPAKILPKNEWPVHGSVESVGKSSSVSRPH 218
>TC13619 similar to UP|Q9LFQ3 (Q9LFQ3) Transcriptional regulatory-like
protein, partial (6%)
Length = 537
Score = 26.6 bits (57), Expect = 0.73
Identities = 14/47 (29%), Positives = 20/47 (41%), Gaps = 9/47 (19%)
Frame = -1
Query: 26 SSKKEISKVPSLSE---------KWKIHGKLESLPRNSAPTRLHRRC 63
S+ +S +PS S WK +SLP S+P + H C
Sbjct: 141 SASPSLSALPSTSSCSISSSSCSSWKHSSPADSLPETSSPAQTHFHC 1
>TC11948
Length = 591
Score = 25.8 bits (55), Expect = 1.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 43 IHGKLESLPRNSAPTRLHRRC 63
+H ++ P+NS P + RRC
Sbjct: 159 VHNHIKKAPKNSLPFEIKRRC 97
>TC14978 weakly similar to UP|Q7S392 (Q7S392) Predicted protein, partial
(3%)
Length = 573
Score = 25.8 bits (55), Expect = 1.3
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Frame = -1
Query: 4 KSLIQREK-KRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLP 51
+SL +R K K+Q+ +Q H S IS + SLS KI SLP
Sbjct: 306 RSLTERAK*KQQQKKQA*HSYPTLSLSSISSLSSLSSPNKISQNSSSLP 160
>AV768278
Length = 438
Score = 25.8 bits (55), Expect = 1.3
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 4 KSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRN 53
+ L R+KK + H+ RR + ++ L ++W K ++ PRN
Sbjct: 250 QDLKARKKKNARTHTGTHIHRRQPCGKSTEARGLPDEWNQQQKHQARPRN 399
>TC11387
Length = 563
Score = 25.4 bits (54), Expect = 1.6
Identities = 8/34 (23%), Positives = 23/34 (67%)
Frame = +3
Query: 8 QREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKW 41
++ KKRQ ++ + +I++ + +++ +PS+ K+
Sbjct: 231 RKSKKRQSQDKVHQIIKKKTMDKMALLPSMKNKF 332
>BP066303
Length = 539
Score = 25.0 bits (53), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 33 KVPSLSEKWKIHGKLESLPRNS 54
+V S S KW IHG+ +P NS
Sbjct: 292 QVLSCSCKWTIHGQTTKIPINS 357
>TC15226 UP|O82459 (O82459) Rac GTPase activating protein 2 (Fragment),
partial (92%)
Length = 1436
Score = 25.0 bits (53), Expect = 2.1
Identities = 19/52 (36%), Positives = 25/52 (47%)
Frame = +3
Query: 33 KVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLR 84
KV S EK G LES+ S+P+R + +G + YR S H LR
Sbjct: 912 KVWSSEEKGTGGGALESVSGGSSPSR-----YESGPLESRYRGIYDSEHWLR 1052
>AV409152
Length = 411
Score = 25.0 bits (53), Expect = 2.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 8 QREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWK 42
+R KKR+ E K RR+S++ + L WK
Sbjct: 131 RRSKKRRDKETKGRGCRRASRRPPKQTLDLESSWK 27
>AV780961
Length = 543
Score = 24.6 bits (52), Expect = 2.8
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -3
Query: 35 PSLSEKWKIHGKLESLPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLREMVHECLLP 93
PS+++K+ +L + AP+ CF + +A ++++ L+ L EMV+EC LP
Sbjct: 190 PSVADKYDCSSDSITLSKEYAPSI----CFFSSW-QAIFKNWCLASR-LDEMVYECFLP 32
>TC9902 similar to UP|BAD07483 (BAD07483) PDR-type ABC transporter 1,
partial (19%)
Length = 1207
Score = 24.6 bits (52), Expect = 2.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 40 KWKIHGKLESLPRNSAPTRLHRRCFST--GRPRANYRDFGLSGHTLR 84
+WK HG L SLP S+ HRR +T R N + L + +R
Sbjct: 616 QWKQHGDLVSLPHPSS----HRR*STTM*ST*RTNTKRISLQSNQIR 488
>TC11773 similar to UP|Q8LL12 (Q8LL12) EDS1, partial (11%)
Length = 602
Score = 24.6 bits (52), Expect = 2.8
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 23 IRRSSKKEISKVPSLSEKWKIHGKLESLPRN 53
IRR ++++S+ + +W+I G + + RN
Sbjct: 167 IRRGERRKLSRSLASGLRWRIFGTWQQVTRN 259
>AV764807
Length = 529
Score = 24.6 bits (52), Expect = 2.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 14 QKLEQKYHL--IRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHR 61
++ E + HL +R + + K+P LS++ +HG + LPR P L R
Sbjct: 366 RRAENRSHLQPSKRGAHSQ-DKLPQLSQREALHGHPQRLPR---PRHLQR 503
>TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
subunit 26S ribosomal RNA gene, partial sequence,
complete
Length = 6006
Score = 24.3 bits (51), Expect = 3.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 52 RNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLR 84
R PT H+R PR+NY F + +R
Sbjct: 861 RRDEPTGAHQRRTDRPNPRSNYELFNCNNLNIR 763
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,908,318
Number of Sequences: 28460
Number of extensions: 25046
Number of successful extensions: 166
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of query: 100
length of database: 4,897,600
effective HSP length: 76
effective length of query: 24
effective length of database: 2,734,640
effective search space: 65631360
effective search space used: 65631360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)
Description of BAB33188.1