BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33185.1 126 aa
(126 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12522 UP|YCF3_LOTJA (Q9BBT4) Photosystem I assembly protein yc... 259 7e-71
AV766219 148 2e-37
TC17270 UP|YCF3_LOTJA (Q9BBT4) Photosystem I assembly protein yc... 99 2e-22
AV423919 34 0.008
TC17592 similar to UP|OM20_SOLTU (P92792) Mitochondrial import r... 28 0.61
TC18047 similar to UP|Q9ZUZ9 (Q9ZUZ9) At2g39090 protein, partial... 27 0.79
TC11375 similar to UP|Q8L7B2 (Q8L7B2) Serine carboxypeptidase 1-... 27 0.79
TC14636 weakly similar to UP|Q9ZUS6 (Q9ZUS6) At2g37400 protein, ... 27 1.0
BP042902 27 1.0
TC17693 similar to UP|SFR2_HUMAN (Q01130) Splicing factor, argin... 26 1.8
TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial... 25 3.0
TC15126 similar to UP|Q84P19 (Q84P19) Acyl-activating enzyme 11,... 25 3.0
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 25 3.0
TC19499 similar to UP|Q9SC90 (Q9SC90) Pectin methyl-esterase PER... 25 5.1
TC10900 weakly similar to UP|Q9CB03 (Q9CB03) F17L21.25 (AT1G2746... 24 6.7
BP068636 24 8.7
TC13815 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol ... 24 8.7
TC8928 similar to UP|AAQ84307 (AAQ84307) Fiber protein Fb4 (Frag... 24 8.7
>TC12522 UP|YCF3_LOTJA (Q9BBT4) Photosystem I assembly protein ycf3, partial
(74%)
Length = 414
Score = 259 bits (663), Expect = 7e-71
Identities = 124/125 (99%), Positives = 124/125 (99%)
Frame = +1
Query: 1 MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60
MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 1 MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 180
Query: 61 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWLK 120
PFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWLK
Sbjct: 181 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWLK 360
Query: 121 ITRRF 125
I RRF
Sbjct: 361 IKRRF 375
>AV766219
Length = 436
Score = 148 bits (374), Expect = 2e-37
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = +2
Query: 8 NYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAF 67
NYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAF
Sbjct: 2 NYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAF 181
Query: 68 NNMAVICHY 76
NNMAVICHY
Sbjct: 182NNMAVICHY 208
>TC17270 UP|YCF3_LOTJA (Q9BBT4) Photosystem I assembly protein ycf3, partial
(27%)
Length = 587
Score = 99.4 bits (246), Expect = 2e-22
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +3
Query: 77 RGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWLKIT 122
RGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWLKIT
Sbjct: 417 RGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQNWLKIT 554
>AV423919
Length = 422
Score = 33.9 bits (76), Expect = 0.008
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 10 AEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 69
A+A+ Y +A+ L+ + Y R++ N+G+ + + G + +++ YY RAL NP A+
Sbjct: 68 ADAIMAYQQALDLKPN-YVRAWA--NMGISYANQGMYDESIRYYVRALAMNPKAENAWQY 238
Query: 70 MAV 72
+ +
Sbjct: 239 LRI 247
>TC17592 similar to UP|OM20_SOLTU (P92792) Mitochondrial import receptor
subunit TOM20 (Translocase of outer membrane 20 kDa
subunit), partial (58%)
Length = 482
Score = 27.7 bits (60), Expect = 0.61
Identities = 15/48 (31%), Positives = 26/48 (53%)
Frame = +1
Query: 64 PQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGN 111
P+ + + + + QA D E A+ +FD+AAEY++ A+ P N
Sbjct: 328 PKKHDTLWCLGNAHTSQAFLIPDLEEAKVYFDKAAEYFQLAVEEDPEN 471
>TC18047 similar to UP|Q9ZUZ9 (Q9ZUZ9) At2g39090 protein, partial (39%)
Length = 826
Score = 27.3 bits (59), Expect = 0.79
Identities = 16/54 (29%), Positives = 25/54 (45%)
Frame = +2
Query: 2 SAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFR 55
SA+ G +A + Y A+RLE + L + +I NG+ LE Y +
Sbjct: 5 SARDSGGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 166
>TC11375 similar to UP|Q8L7B2 (Q8L7B2) Serine carboxypeptidase 1-like
protein (Serine carboxypeptidase 1 precursor-like
protein), partial (35%)
Length = 874
Score = 27.3 bits (59), Expect = 0.79
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 43 NGEHTKALEYYFRALERNP 61
NGE+ K L YYF + ERNP
Sbjct: 255 NGENGKNLFYYFVSSERNP 311
>TC14636 weakly similar to UP|Q9ZUS6 (Q9ZUS6) At2g37400 protein, partial
(43%)
Length = 1316
Score = 26.9 bits (58), Expect = 1.0
Identities = 13/49 (26%), Positives = 28/49 (56%)
Frame = +3
Query: 22 LEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNM 70
+E++P + ++ L ++ NGEH A + L+R+PF +A++ +
Sbjct: 441 IELEPEEVELLVLKAHL-YSHNGEHELARNGFEEVLKRDPFDAEAYHGL 584
>BP042902
Length = 464
Score = 26.9 bits (58), Expect = 1.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 26 PYDRSYILYNIGLIHTSNGEHTK 48
PY LY +GLIH ++GE K
Sbjct: 380 PYSEGGALYALGLIHANHGEGIK 448
>TC17693 similar to UP|SFR2_HUMAN (Q01130) Splicing factor,
arginine/serine-rich 2 (Splicing factor SC35) (SC-35)
(Splicing component, 35 kDa) (PR264 protein), partial
(8%)
Length = 751
Score = 26.2 bits (56), Expect = 1.8
Identities = 25/110 (22%), Positives = 44/110 (39%), Gaps = 4/110 (3%)
Frame = +2
Query: 6 EGNYAEALQNYYEAMRLEVDPYD----RSYILYNIGLIHTSNGEHTKALEYYFRALERNP 61
EG Y EAL Y A+++ D RS N + G++ ++ +ALE NP
Sbjct: 377 EGKYEEALVQYELALQVAPDMPSSVEIRSIFHSNSAVCFLKLGKYENTIKECTKALELNP 556
Query: 62 FLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGN 111
+A +R+G++ ++A K+ + + P N
Sbjct: 557 TYVKAL--------------VRRGEAHEKLEHNEEALADLKKILEIDPSN 664
>TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial (25%)
Length = 489
Score = 25.4 bits (54), Expect = 3.0
Identities = 17/76 (22%), Positives = 29/76 (37%)
Frame = +1
Query: 41 TSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEY 100
T + +H Y+F + F++ +C + GE ES + +Y
Sbjct: 187 TEHSQHRAGFGYHFTW-----DIVSIFHHFFCVCFFGGE-----------ESRLQKLFDY 318
Query: 101 WKQAIALTPGNYIEAQ 116
W + + PG EAQ
Sbjct: 319 WHNWLLIVPGCKFEAQ 366
>TC15126 similar to UP|Q84P19 (Q84P19) Acyl-activating enzyme 11, partial
(25%)
Length = 749
Score = 25.4 bits (54), Expect = 3.0
Identities = 14/46 (30%), Positives = 19/46 (40%)
Frame = -1
Query: 57 LERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWK 102
L R+PF PQAF + C + S W AE+W+
Sbjct: 509 LVRHPFEPQAF*GLLAPCSHT--------HSPQRRLWLPSGAEWWR 396
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 25.4 bits (54), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 103 QAIALTPGNYIEAQNWLKIT 122
+A A TPG++I NWL T
Sbjct: 239 EAQAFTPGSFIAGSNWLGST 298
>TC19499 similar to UP|Q9SC90 (Q9SC90) Pectin methyl-esterase PER precursor
, partial (4%)
Length = 480
Score = 24.6 bits (52), Expect = 5.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +3
Query: 104 AIALTPGNYIEAQNWLKITR 123
AI+ +P + +W+K+TR
Sbjct: 171 AISFSPSRFFRGDDWIKVTR 230
>TC10900 weakly similar to UP|Q9CB03 (Q9CB03) F17L21.25
(AT1G27460/F17L21_26), partial (5%)
Length = 609
Score = 24.3 bits (51), Expect = 6.7
Identities = 19/84 (22%), Positives = 34/84 (39%), Gaps = 33/84 (39%)
Frame = +2
Query: 1 MSAQSEGNYAEALQNYYEAMRLEVD--------------------PYDRSYIL------- 33
M +++G Y EAL + EA+ ++ D P RS+++
Sbjct: 35 MMYEAKGLYKEALTAFREALDIDPDHVPSLISTALVLKRCTNPSNPAVRSFLMDALRHDR 214
Query: 34 ------YNIGLIHTSNGEHTKALE 51
YN+GL+H + G + +E
Sbjct: 215 LNASAWYNLGLLHKAEGTASSVVE 286
>BP068636
Length = 463
Score = 23.9 bits (50), Expect = 8.7
Identities = 7/22 (31%), Positives = 12/22 (53%)
Frame = -2
Query: 61 PFLPQAFNNMAVICHYRGEQAI 82
PF+P + + +CH G +I
Sbjct: 282 PFIPYIYQSRGQVCHLEGTDSI 217
>TC13815 weakly similar to UP|AAQ04052 (AAQ04052) Diacylglycerol sterol
acyltransferase-like protein, partial (8%)
Length = 462
Score = 23.9 bits (50), Expect = 8.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -2
Query: 64 PQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYW 101
P+ N A HYRGEQ + WF A W
Sbjct: 287 PRHSNEHAAYPHYRGEQ*Q*HEPQTKIDYWFLHAKPIW 174
>TC8928 similar to UP|AAQ84307 (AAQ84307) Fiber protein Fb4 (Fragment),
partial (72%)
Length = 1278
Score = 23.9 bits (50), Expect = 8.7
Identities = 13/47 (27%), Positives = 20/47 (41%)
Frame = +3
Query: 39 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQG 85
I +S +T + Y RNP+ N C + GE+ R+G
Sbjct: 417 IFSSCSVYTVWIAYPSVYTSRNPYQTAGSNQSQEACFFMGEEVWRRG 557
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,120,802
Number of Sequences: 28460
Number of extensions: 24415
Number of successful extensions: 115
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of query: 126
length of database: 4,897,600
effective HSP length: 80
effective length of query: 46
effective length of database: 2,620,800
effective search space: 120556800
effective search space used: 120556800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)
Description of BAB33185.1