TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33183.1	158 aa
         (158 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10153 UP|NUKC_LOTJA (Q9BBT7) NAD(P)H-quinone oxidoreductase ch...   340  5e-95
AV423335                                                               26  3.6
AV778794                                                               26  3.6
TC16146 weakly similar to UP|VIL4_ARATH (O65570) Villin 4, parti...    26  3.6
TC16415 similar to UP|Q9SAF0 (Q9SAF0) F3F19.19 protein (At1g1317...    25  6.2
TC14292 similar to UP|O24323 (O24323) Cysteine proteinase precur...    25  6.2
TC13994 similar to UP|AAQ65183 (AAQ65183) At5g58020, partial (19%)     25  8.1
TC17882                                                                25  8.1

>TC10153 UP|NUKC_LOTJA (Q9BBT7) NAD(P)H-quinone oxidoreductase chain K,
           chloroplast  (NAD(P)H dehydrogenase, chain K)
           (NADH-plastoquinone oxidoreductase subunit K) , complete
          Length = 1317

 Score =  340 bits (873), Expect = 5e-95
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 1   MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 60
           MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS
Sbjct: 841 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVS 1020

Query: 61  PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 120
           PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI
Sbjct: 1021PGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGI 1200

Query: 121 SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
           SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH
Sbjct: 1201SYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 1314


>AV423335 
          Length = 466

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 36  WHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHL 71
           W+  A +LY+ G    RS+C+  VS   LL S++ +
Sbjct: 117 WNCFACVLYIQGNREQRSRCSE*VS--SLLGSLWFI 218


>AV778794 
          Length = 545

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 17/59 (28%), Positives = 26/59 (43%)
 Frame = -3

Query: 36  WHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNN 94
           WH IA +     +NYL  +C   +S  G L   Y    + C I+    + I  F+  +N
Sbjct: 186 WHYIATMQLDTNFNYLPLECIKCLSSSGSLLVKY----MPCLIFLTTVLHICSFISSHN 22


>TC16146 weakly similar to UP|VIL4_ARATH (O65570) Villin 4, partial (6%)
          Length = 689

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 17/59 (28%), Positives = 26/59 (43%)
 Frame = +3

Query: 36  WHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNN 94
           WH IA +     +NYL  +C   +S  G L   Y    + C I+    + I  F+  +N
Sbjct: 417 WHYIATMQLDTNFNYLPLECIKCLSSSGSLLVKY----MPCLIFLTTVLHICSFISSHN 581


>TC16415 similar to UP|Q9SAF0 (Q9SAF0) F3F19.19 protein
           (At1g13170/F3F19_19), partial (12%)
          Length = 502

 Score = 25.0 bits (53), Expect = 6.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 61  PGGLLASVYHLTRIECGIYQPEEVCIKIFV 90
           P GL +S +HL+ +   +++ + +CI  F+
Sbjct: 236 PSGLASSFWHLSGLSLQLFKSQFLCIWQFI 147


>TC14292 similar to UP|O24323 (O24323) Cysteine proteinase precursor ,
           partial (95%)
          Length = 1792

 Score = 25.0 bits (53), Expect = 6.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 8   WLVKHGLVHRSLG 20
           WLVKHG V+ +LG
Sbjct: 189 WLVKHGKVYNALG 227


>TC13994 similar to UP|AAQ65183 (AAQ65183) At5g58020, partial (19%)
          Length = 602

 Score = 24.6 bits (52), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (49%), Gaps = 6/34 (17%)
 Frame = +2

Query: 52  RSQCAYDVSPGGL------LASVYHLTRIECGIY 79
           +S   Y + P  L      LA +YHL   +CG+Y
Sbjct: 272 KSMPPYSLHPENLILKKHTLADLYHLEETDCGMY 373


>TC17882 
          Length = 399

 Score = 24.6 bits (52), Expect = 8.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 10  VKHGLVHRSLGFDYQGIETLQIKPEDWHSIAV 41
           V HG     LG +    +T+++KP  W+++ +
Sbjct: 110 VSHGTYAVRLGNEASISQTIKVKPGQWYALII 205


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.143    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,650,415
Number of Sequences: 28460
Number of extensions: 56334
Number of successful extensions: 233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of query: 158
length of database: 4,897,600
effective HSP length: 83
effective length of query: 75
effective length of database: 2,535,420
effective search space: 190156500
effective search space used: 190156500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)