BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33177.1 508 aa
(508 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP459503 maturase for trnK intron [Lotus japonicus] 1033 0.0
TC14042 homologue to UP|Q9XEW9 (Q9XEW9) Elongation factor 1-alph... 32 0.32
TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting prote... 30 0.93
TC12048 weakly similar to UP|Q9LGA3 (Q9LGA3) ESTs D22655(C0749),... 30 0.93
TC18233 weakly similar to UP|Q9FNP1 (Q9FNP1) Similarity to ATPas... 30 1.2
AV406671 29 1.6
AV420254 28 2.7
BP033255 28 3.5
TC18345 similar to UP|Q84VU1 (Q84VU1) 65 kDa microtubule associa... 28 3.5
TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%) 28 4.6
TC14922 similar to UP|Q8H0S3 (Q8H0S3) At1g05520/T25N20_16, parti... 28 4.6
TC12233 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transpor... 28 4.6
TC10985 28 4.6
TC14041 homologue to UP|Q9XEW9 (Q9XEW9) Elongation factor 1-alph... 27 6.0
TC8060 UP|O49184 (O49184) Calmodulin (ESTS AU081349) (Auxin-regu... 27 6.0
AV407472 27 6.0
TC13127 weakly similar to UP|O49373 (O49373) Cytochrome P450 - l... 27 6.0
BP046094 27 7.9
AV765789 27 7.9
>NP459503 maturase for trnK intron [Lotus japonicus]
Length = 1527
Score = 1033 bits (2671), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Frame = +1
Query: 1 MEEYQLYLELDRSRQQDFLYPLVFHEYIYGLAYSHDLNRSIFVENFGYDNKYSLLIVKRL 60
MEEYQLYLELDRSRQQDFLYPLVFHEYIYGLAYSHDLNRSIFVENFGYDNKYSLLIVKRL
Sbjct: 1 MEEYQLYLELDRSRQQDFLYPLVFHEYIYGLAYSHDLNRSIFVENFGYDNKYSLLIVKRL 180
Query: 61 ITRMYQQNHLIISANDSNKNRFLRYNKNFYSQIISEGFAIIVEILFSLQLSSSLEEAEII 120
ITRMYQQNHLIISANDSNKNRFLRYNKNFYSQIISEGFAIIVEILFSLQLSSSLEEAEII
Sbjct: 181 ITRMYQQNHLIISANDSNKNRFLRYNKNFYSQIISEGFAIIVEILFSLQLSSSLEEAEII 360
Query: 121 KSYKNLRSIHSIFPFFEDKVTYLNYISDIRVPYPIHLEILVQILRYWVKDAPLFHLLRLF 180
KSYKNLRSIHSIFPFFEDKVTYLNYISDIRVPYPIHLEILVQILRYWVKDAPLFHLLRLF
Sbjct: 361 KSYKNLRSIHSIFPFFEDKVTYLNYISDIRVPYPIHLEILVQILRYWVKDAPLFHLLRLF 540
Query: 181 LYDYCNWNSIFIPQKSIYTFSKKNPRFFFFLYNFYVCEYESIFFFLRTKSFHLRLKSFRV 240
LYDYCNWNSIFIPQKSIYTFSKKNPRFFFFLYNFYVCEYESIFFFLRTKSFHLRLKSFRV
Sbjct: 541 LYDYCNWNSIFIPQKSIYTFSKKNPRFFFFLYNFYVCEYESIFFFLRTKSFHLRLKSFRV 720
Query: 241 FFERIFFYAKKGHLVEVFVKDFFSTLTFFKDPFIHYVRYQGKSILASKNLPILMNKWKYY 300
FFERIFFYAKKGHLVEVFVKDFFSTLTFFKDPFIHYVRYQGKSILASKNLPILMNKWKYY
Sbjct: 721 FFERIFFYAKKGHLVEVFVKDFFSTLTFFKDPFIHYVRYQGKSILASKNLPILMNKWKYY 900
Query: 301 FIHLWQCYFDVWSQPRTIRINQLSEYSFHFLGYFLKVGLKHSVVRGQMLQNGFLIKIIIK 360
FIHLWQCYFDVWSQPRTIRINQLSEYSFHFLGYFLKVGLKHSVVRGQMLQNGFLIKIIIK
Sbjct: 901 FIHLWQCYFDVWSQPRTIRINQLSEYSFHFLGYFLKVGLKHSVVRGQMLQNGFLIKIIIK 1080
Query: 361 KLDIIVPIIPIIRLLAKSKFCNVLGNPLSKPSWADLSDFEIIARFLRICRNLSHYYNGSS 420
KLDIIVPIIPIIRLLAKSKFCNVLGNPLSKPSWADLSDFEIIARFLRICRNLSHYYNGSS
Sbjct: 1081KLDIIVPIIPIIRLLAKSKFCNVLGNPLSKPSWADLSDFEIIARFLRICRNLSHYYNGSS 1260
Query: 421 KKKSLYRIKYILRLSCIKTLACKHKSTVRAFSKRLGSEELLEEFFTEEEEILSLIFPTTS 480
KKKSLYRIKYILRLSCIKTLACKHKSTVRAFSKRLGSEELLEEFFTEEEEILSLIFPTTS
Sbjct: 1261KKKSLYRIKYILRLSCIKTLACKHKSTVRAFSKRLGSEELLEEFFTEEEEILSLIFPTTS 1440
Query: 481 STLRRLHRNRIWYLDILFSNDNDLINHD 508
STLRRLHRNRIWYLDILFSNDNDLINHD
Sbjct: 1441STLRRLHRNRIWYLDILFSNDNDLINHD 1524
>TC14042 homologue to UP|Q9XEW9 (Q9XEW9) Elongation factor 1-alpha 1,
partial (38%)
Length = 800
Score = 31.6 bits (70), Expect = 0.32
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 180 FLYDYCNWNSIFIPQKSIY---TFSKKNPRFFFFLYNFYVCEYESIFFFL 226
FL+ Y N N + +K ++ +FS ++PRF F+ Y F+ + ++FF L
Sbjct: 537 FLFVYVNHNH-HVSRKLLFLYCSFSVESPRFLFYPYIFHSSLFITVFFLL 683
>TC17991 similar to UP|RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4,
partial (14%)
Length = 598
Score = 30.0 bits (66), Expect = 0.93
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +2
Query: 313 SQPRTIRINQLSEYSFHFLGYFLKVGLK-HSVVRGQMLQNGFLIKII 358
S P+ ++ + L ++SFHFLG F K+ K H+V+ Q L G ++KI+
Sbjct: 50 SDPKKLK-SFLEKFSFHFLGVFQKLRTKWHNVLMYQSLAIG-MVKIM 184
>TC12048 weakly similar to UP|Q9LGA3 (Q9LGA3) ESTs D22655(C0749), partial
(20%)
Length = 697
Score = 30.0 bits (66), Expect = 0.93
Identities = 29/113 (25%), Positives = 51/113 (44%), Gaps = 10/113 (8%)
Frame = -1
Query: 274 IHYVRYQGKSILASKNLPILMNKWKYYFIHLWQCYFDVWSQPRTIRI-------NQLSEY 326
I YVR + S L+ + LP ++ WK H + + +P + I ++E
Sbjct: 673 IRYVRKRHISNLSHRRLPEQLHPWKLRSFHSRKSTSKIIRKPHHLNILLILERSRYINEK 494
Query: 327 SFHFLGYFLKVGLKHSVVRGQMLQNGFLIKII---IKKLDIIVPIIPIIRLLA 376
L+ L+HS +R L + L+ ++ + +IV IIPII L++
Sbjct: 493 CLQIRSINLRRRLRHSHLRLLRLLHLHLLHLLHLPVLSHILIVIIIPIIILIS 335
>TC18233 weakly similar to UP|Q9FNP1 (Q9FNP1) Similarity to ATPase, partial
(3%)
Length = 616
Score = 29.6 bits (65), Expect = 1.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Frame = +2
Query: 169 KDAPLFHLLRLFLYDYCNW-NSIFIPQKSIYTFS---------KKNPRFFFFLYNFYVCE 218
K P+F L LY W NS F+ + + K NPRFFF Y F+ CE
Sbjct: 233 KRPPMFIYTSLILYRSLTWFNSSFVVFRKCNIYKNVTNKIDKKKVNPRFFFSFY-FWSCE 409
>AV406671
Length = 416
Score = 29.3 bits (64), Expect = 1.6
Identities = 12/39 (30%), Positives = 25/39 (63%)
Frame = -1
Query: 351 NGFLIKIIIKKLDIIVPIIPIIRLLAKSKFCNVLGNPLS 389
+G I ++++ +D++V ++P+ LLA S F + P+S
Sbjct: 263 DGERICLLVRTIDLLVSVVPVTILLASSAFAILALGPVS 147
>AV420254
Length = 156
Score = 28.5 bits (62), Expect = 2.7
Identities = 11/26 (42%), Positives = 19/26 (72%)
Frame = +3
Query: 472 LSLIFPTTSSTLRRLHRNRIWYLDIL 497
+ L F T+ S+LRRL R ++W +++L
Sbjct: 60 MKLRFQTSRSSLRRLLRKQVWMMELL 137
>BP033255
Length = 526
Score = 28.1 bits (61), Expect = 3.5
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = +2
Query: 293 LMNKWKYYFIHLWQCYFDVWSQPRTIRINQLSEYSFHFLGYFLKVGLKHSV 343
L+++W+ ++ W F +W RTI L F+ FL G++ SV
Sbjct: 335 LVDEWERGYVFAWCRLFSLWKGDRTILNLPLRVLLFNICQEFLI*GVQQSV 487
>TC18345 similar to UP|Q84VU1 (Q84VU1) 65 kDa microtubule associated
protein, partial (8%)
Length = 521
Score = 28.1 bits (61), Expect = 3.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Frame = -3
Query: 143 LNYISDIRVPYPIHLEILVQILRYWVKDAP-----------LFHLLRLFLYD 183
L+ ++ I P PI+L L +L W+ D P L+HLL LFL++
Sbjct: 156 LHVLTFIYQPCPIYLFGLKLMLLLWLSDCPC*LESMNXPSYLWHLLDLFLHE 1
>TC16241 weakly similar to UP|Q91TH4 (Q91TH4) T122, partial (7%)
Length = 799
Score = 27.7 bits (60), Expect = 4.6
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 125 NLRSIHSIFPFFEDKVTYLNYISDIRVPYPIHLEILVQILRYWVKDAPLFHLLRLFLYDY 184
N + IH+I +E+ ++Y+ YP+ + +I+ Y+ L+L Y Y
Sbjct: 744 NRKLIHTIM--YENNISYI---------YPLKNRNVYKIIHYY--------FLKLQNYTY 622
Query: 185 CNWNSIFIPQKSIYTFSKKN 204
N N+ F+P + S KN
Sbjct: 621 *NLNTHFLPNNRSESDSNKN 562
>TC14922 similar to UP|Q8H0S3 (Q8H0S3) At1g05520/T25N20_16, partial (53%)
Length = 1817
Score = 27.7 bits (60), Expect = 4.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 429 KYILRLSCIKTLACKHKSTVRAFSKRLGSEELL 461
K + LSC+K LA + T+ + S R+GS L+
Sbjct: 78 KLVALLSCLKVLAIQSSRTLLSVSSRMGSXLLV 176
>TC12233 similar to UP|Q9FLT8 (Q9FLT8) Similarity to ABC transporter,
partial (9%)
Length = 581
Score = 27.7 bits (60), Expect = 4.6
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Frame = -1
Query: 301 FIHLWQCYFDVWSQPRTIRINQLSEYSF-HFLGYFLK------VGLKHSVVRGQMLQNGF 353
+ H C F T+ + QL SF HFL Y+ + + +VV +M+ N
Sbjct: 530 YTHKSLCIFS-----HTLFLKQLH*ISFDHFLSYYYSFFYYTHIYIDVNVVSKKMIMNRL 366
Query: 354 LIKIIIKKLDIIVPI-IPIIRLLAKSKFCNVLGNPLSKP 391
+ ++ K D + L+ S C V NP+ KP
Sbjct: 365 AVYLVTKIKDRVSNA*ASRATLMKTSSTCGVQLNPMQKP 249
>TC10985
Length = 736
Score = 27.7 bits (60), Expect = 4.6
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -3
Query: 144 NYISDIRVPYPIHLEILVQILRYW-VKDAPLFHLLRLFLYDYCNWNS 189
N+ +D RV + +H++I +Q Y + ++ +FH+L FL +CN S
Sbjct: 515 NWSAD-RVLFKVHIQIQLQ*NSYMDINNSLIFHVLVWFLQ*FCNVTS 378
>TC14041 homologue to UP|Q9XEW9 (Q9XEW9) Elongation factor 1-alpha 1,
partial (34%)
Length = 777
Score = 27.3 bits (59), Expect = 6.0
Identities = 22/63 (34%), Positives = 33/63 (51%), Gaps = 3/63 (4%)
Frame = +2
Query: 180 FLYDYCNWNSIFIPQKSIY---TFSKKNPRFFFFLYNFYVCEYESIFFFLRTKSFHLRLK 236
FL+ Y N N + +K +Y +FS ++PRF FF+ VC + FF + LR+
Sbjct: 479 FLFVYVNHNH-HVSRKLLYLYCSFSVESPRFLFFI---PVC---LLLFFNF*EETELRIS 637
Query: 237 SFR 239
FR
Sbjct: 638 IFR 646
>TC8060 UP|O49184 (O49184) Calmodulin (ESTS AU081349) (Auxin-regulated
calmodulin) (Calmodulin TACAM1-1) (Calmodulin TACAM1-2)
(Calmodulin TACAM1-3) (Calmodulin TACAM3-1) (Calmodulin
TACAM3-2) (Calmodulin TACAM3-3) (Calmodulin TACAM4-1)
(CaM protein), complete
Length = 615
Score = 27.3 bits (59), Expect = 6.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 296 KWKYYFIHLWQCYFDVWSQP 315
+W YY+ W C+ W++P
Sbjct: 140 RWLYYYQGTWDCHAVTWAKP 199
>AV407472
Length = 386
Score = 27.3 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 189 SIFIPQKSIYTFSKKNPRFFFFLY 212
S FI + I+TFS PR F F+Y
Sbjct: 105 STFISFRFIFTFSLTTPRTFIFIY 176
>TC13127 weakly similar to UP|O49373 (O49373) Cytochrome P450 - like protein
(Cytochrome P450-like protein), partial (13%)
Length = 495
Score = 27.3 bits (59), Expect = 6.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 471 ILSLIFPTTSSTLRRLHRNRIWYLDILFSNDNDLINHD 508
ILSL +P + L + H ++W + F N +++ +
Sbjct: 296 ILSLGYPNLQTILHKKHNRKVWNSSMTFHRMNTIVSQN 183
>BP046094
Length = 547
Score = 26.9 bits (58), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = -1
Query: 467 EEEEILSLIFPTTSSTLRRLHRNRIWYLDILF 498
EEEE+L L P+T R+ + +W L ++F
Sbjct: 334 EEEEMLFLEIPSTRVGNERIAFDLVWILSVIF 239
>AV765789
Length = 549
Score = 26.9 bits (58), Expect = 7.9
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 84 RYNKNFYSQIISEGFAIIVEILFSLQLSSSLEEAEIIKSYKNLRSIHSIFPFFEDKVTYL 143
R NKN Y + LF ++ S + I N +I F + YL
Sbjct: 242 RTNKNKYQM---HNYTTSARSLFLIKCSPQIPSKVAIWPRYNYTTIGHDSITFSKLILYL 412
Query: 144 -NYISDIRVPYPIHLEILVQILRY 166
N + + P+P+H EIL + R+
Sbjct: 413 YNTRTRVHHPFPLHTEILSPLKRF 484
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.330 0.145 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,915,712
Number of Sequences: 28460
Number of extensions: 160788
Number of successful extensions: 1385
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of query: 508
length of database: 4,897,600
effective HSP length: 94
effective length of query: 414
effective length of database: 2,222,360
effective search space: 920057040
effective search space used: 920057040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Description of BAB33177.1