BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33244.1 323 aa
(323 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI787692 31 0.87
TC232970 similar to PIR|T48473|T48473 amino acid transport-like ... 30 1.5
TC221014 homologue to UP|Q6JCU4 (Q6JCU4) ATP synthase F0 subunit... 30 1.5
TC229178 homologue to UP|Q70I37 (Q70I37) Vacuolar proton-ATPase ... 30 1.5
TC206932 29 2.5
TC234124 29 3.3
TC215488 weakly similar to GB|AAS76736.1|45773864|BT012249 At3g5... 28 4.3
TC217620 similar to GB|AAO39914.1|28372864|BT003686 At1g71430 {A... 28 5.6
BI701180 28 5.6
TC232820 similar to UP|Q6HFY8 (Q6HFY8) Possible transcriptional ... 28 7.3
TC221023 similar to UP|Q9LNN8 (Q9LNN8) F8L10.1 protein, partial ... 28 7.3
TC208337 28 7.3
AW200740 27 9.6
TC204893 27 9.6
TC215622 similar to UP|IN37_SPIOL (P23525) 37 kDa inner envelope... 27 9.6
TC219622 similar to UP|Q6I664 (Q6I664) HD-ZIP protein (Fragment)... 27 9.6
AW567752 27 9.6
>BI787692
Length = 465
Score = 30.8 bits (68), Expect = 0.87
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 59 RWFFSGHLPFSDLYESLIFLSWGFSIFYMVPRFK 92
+WF+ G PF+ + S IFL + FSIF P FK
Sbjct: 107 KWFYVGPTPFTLYFNSNIFLLFLFSIF---PSFK 15
>TC232970 similar to PIR|T48473|T48473 amino acid transport-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(9%)
Length = 888
Score = 30.0 bits (66), Expect = 1.5
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = +3
Query: 27 ITLFVNQIVGFYDSSKKGMIITFLCITGLLITRWFFSGHLPFSDLYESLIFLSWGFSIFY 86
ITLF + S +++ ++ L+ R+ + H P + L LS F
Sbjct: 9 ITLFTELDIIIELISIGTLLVFYMVANALIYRRYVITSHAPPTHTLVFLFLLSLSALCFS 188
Query: 87 MVPRFKKQKNDL----STIIAPSVIFTQGFATSGLLTEMHQSVILVPALQSHWLMMHVSM 142
+ +FK+Q L +IA + F +T+ T +H SV +P + + ++V +
Sbjct: 189 LAWKFKQQWWVLVLFGGFMIAITAFFQHVVSTTTTTTTIHWSVPFMPWPPAMSIFLNVFL 368
Query: 143 M 143
M
Sbjct: 369 M 371
>TC221014 homologue to UP|Q6JCU4 (Q6JCU4) ATP synthase F0 subunit 8, partial
(31%)
Length = 700
Score = 30.0 bits (66), Expect = 1.5
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 15/58 (25%)
Frame = +2
Query: 37 FYDSSKKGMIITFLCITGLLITRWFFSGHLP---------------FSDLYESLIFLS 79
FY KK I + LC+ + T +FF LP FS LY +F+S
Sbjct: 53 FYKKKKKTQIFSHLCLLHFICTHFFFLYLLPRLLFFFFFYFLSCSFFSSLYSPFLFMS 226
>TC229178 homologue to UP|Q70I37 (Q70I37) Vacuolar proton-ATPase subunit-like
protein, partial (14%)
Length = 664
Score = 30.0 bits (66), Expect = 1.5
Identities = 18/68 (26%), Positives = 32/68 (46%)
Frame = +3
Query: 69 SDLYESLIFLSWGFSIFYMVPRFKKQKNDLSTIIAPSVIFTQGFATSGLLTEMHQSVILV 128
S YE ++ ++WG+ N++ +I ++F FAT G+L M +
Sbjct: 132 SVFYEKVLMMAWGY-------------NNVIILIVGLIVFI--FATVGVLLVMETLSAFL 266
Query: 129 PALQSHWL 136
AL+ HW+
Sbjct: 267 HALRLHWV 290
>TC206932
Length = 490
Score = 29.3 bits (64), Expect = 2.5
Identities = 14/57 (24%), Positives = 24/57 (41%)
Frame = +2
Query: 247 WANEAWGSYWNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNSSIVASIGFLIIWIC 303
W + WNW + TW F+ +F +S++ + GFL I++C
Sbjct: 248 WTRDL*YVAWNWKERMTWKFLIEEVFPHI-------------ASLIWTSGFLCIYVC 379
>TC234124
Length = 541
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 256 WNWDPKETWAFITWTIFAIYLHSRKNKKLEGLNSSIVASIGFLIIWIC 303
WNW + TW F+ +F +S++ + GFL I++C
Sbjct: 338 WNWKERMTWKFLIEEVFPHI-------------ASLIWTSGFLCIYVC 442
>TC215488 weakly similar to GB|AAS76736.1|45773864|BT012249 At3g51100
{Arabidopsis thaliana;} , partial (35%)
Length = 980
Score = 28.5 bits (62), Expect = 4.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 240 GILSGAVWANEAWGSYWNWDPKETWA--FITWTIF 272
G+L+G +W N+ +W W P E I +TIF
Sbjct: 329 GVLAGVLWRNQRMWGFWTW-PYEAMCSRCIPYTIF 228
>TC217620 similar to GB|AAO39914.1|28372864|BT003686 At1g71430 {Arabidopsis
thaliana;} , partial (40%)
Length = 1060
Score = 28.1 bits (61), Expect = 5.6
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 136 LMMHVSMMILGYAALLCGSLLSVAILVITFQELIP---ILGKSKRLSFLYESFDYAEIKY 192
LMM V MMIL ++ +V L + F+ L P I K+KR F+ ++ +
Sbjct: 637 LMMTVGMMILKAVMIITTMETTVKSLHLLFKNLFPVRIIFRKNKREMFIPKNVQ----E* 804
Query: 193 INMNERNNVLRKTSFSSYRNYYR 215
++ E N +LR S Y N R
Sbjct: 805 LSYPEHNKILRIRSL-CYNNLLR 870
>BI701180
Length = 407
Score = 28.1 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 280 KNKKLEGLNSSIVASIGFLIIWICYF 305
K K+ E LN S+G + W+CYF
Sbjct: 72 KLKQFEALNILFHISLGNYVFWLCYF 149
>TC232820 similar to UP|Q6HFY8 (Q6HFY8) Possible transcriptional regulator,
PadR family, partial (15%)
Length = 918
Score = 27.7 bits (60), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 281 NKKLEGLNSSIVASIGFLIIWICYFGVNLLGIGL 314
N+ + G+ V +G L+IW ++ N GIGL
Sbjct: 493 NRGVRGMRLFKVRGMGSLLIWFTFWDWNSFGIGL 594
>TC221023 similar to UP|Q9LNN8 (Q9LNN8) F8L10.1 protein, partial (4%)
Length = 450
Score = 27.7 bits (60), Expect = 7.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 227 YRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETW 264
YR++S IGI+S A W ++ G+ +W K++W
Sbjct: 220 YRVVS------HIGIMSLATWLSKN*GTLIHWHAKKSW 125
>TC208337
Length = 771
Score = 27.7 bits (60), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +1
Query: 141 SMMILGYAALLCGSLLSVAILVITFQELI 169
S L + ALLCGS+L +IL IT ++
Sbjct: 271 SHFFLDFYALLCGSMLQFSILEITIGRIL 357
>AW200740
Length = 342
Score = 27.3 bits (59), Expect = 9.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 229 IISLGFIFLT-IGILSGAVWA-NEAWGSYW 256
I +LGF L + L G +W NE WG YW
Sbjct: 107 INNLGFFLLWFLCFLGGFMWQ*NEVWGCYW 18
>TC204893
Length = 658
Score = 27.3 bits (59), Expect = 9.6
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = +2
Query: 68 FSDLYESLIFLSWGFSIFYMVPRFKKQKNDLS 99
FSD Y +L+ +SW S YM K K+DLS
Sbjct: 470 FSDAYINLMMMSWTQSFHYM-----KGKSDLS 550
>TC215622 similar to UP|IN37_SPIOL (P23525) 37 kDa inner envelope membrane
protein, chloroplast precursor (E37), partial (49%)
Length = 845
Score = 27.3 bits (59), Expect = 9.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 227 YRIISLGFIFLTIGILSGAVWANEAWGSYWNWDPKETWAFITW 269
YR++ +G I IG + W + + W PKE +I W
Sbjct: 89 YRVLRIGGIACVIGPVHPTFWLSRFFADVWMLFPKEE-EYIEW 214
>TC219622 similar to UP|Q6I664 (Q6I664) HD-ZIP protein (Fragment), partial
(64%)
Length = 1015
Score = 27.3 bits (59), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +3
Query: 50 LCITGLLITRWFFSGHLPFSDLYESLIF 77
L + +L +FFS HLPFS + L+F
Sbjct: 618 LMVWEILFASFFFSLHLPFSFTLQKLVF 701
>AW567752
Length = 433
Score = 27.3 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 140 VSMMILGYAALLCGSLLSVAILVITFQELI 169
++ L + ALLCGS+L +IL IT ++
Sbjct: 80 IADFFLDFYALLCGSMLQFSILEITIGRIL 169
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.329 0.142 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,660,205
Number of Sequences: 63676
Number of extensions: 263941
Number of successful extensions: 1996
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of query: 323
length of database: 12,639,632
effective HSP length: 97
effective length of query: 226
effective length of database: 6,463,060
effective search space: 1460651560
effective search space used: 1460651560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Description of BAB33244.1