TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BAB33214.1	31 aa
         (31 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222570 homologue to UP|Q6QXZ8 (Q6QXZ8) Cytochrome b6/f complex...    47  2e-06

>TC222570 homologue to UP|Q6QXZ8 (Q6QXZ8) Cytochrome b6/f complex subunit
          V, partial (51%)
          Length = 652

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = +2

Query: 1  MPTITSYFGFLLAVLTITSGLFISLRKLRLI 31
          M TITSYFGFLL VL ITS LFI L K+RLI
Sbjct: 32 MLTITSYFGFLLVVLIITSSLFIGLSKIRLI 124


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.338    0.151    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,036,171
Number of Sequences: 63676
Number of extensions: 5053
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of query: 31
length of database: 12,639,632
effective HSP length: 7
effective length of query: 24
effective length of database: 12,193,900
effective search space: 292653600
effective search space used: 292653600
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (25.0 bits)