BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33196.1 1332 aa
(1332 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207638 UP|RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta... 1196 0.0
CB063796 GP|15778189|g rpoC2 {Glycine max}, partial (6%) 176 5e-44
TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragme... 51 4e-06
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragme... 50 7e-06
NP005385 DNA-directed RNA polymerase 50 7e-06
TC220780 weakly similar to UP|Q9LVH0 (Q9LVH0) DNA-directed RNA p... 47 7e-05
TC233527 weakly similar to UP|Q9LVH0 (Q9LVH0) DNA-directed RNA p... 45 2e-04
TC207571 weakly similar to UP|O65470 (O65470) Serine/threonine k... 42 0.002
CD398942 weakly similar to GP|21592666|gb| receptor-like protein... 33 1.1
BE806723 30 5.4
TC219981 similar to UP|Q8LBQ5 (Q8LBQ5) Receptor-like protein kin... 30 7.1
BE023539 30 9.2
TC233650 similar to UP|Q84JC9 (Q84JC9) BZIP transcription factor... 30 9.2
>TC207638 UP|RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain
(PEP) (Plastid-encoded RNA polymerase beta'' subunit)
(RNA polymerase beta'' subunit) , complete
Length = 4156
Score = 1196 bits (3095), Expect = 0.0
Identities = 604/759 (79%), Positives = 660/759 (86%), Gaps = 28/759 (3%)
Frame = +1
Query: 1 MAERANLVFHNKVIGGTAIKRIISRLIDHFGMAYTSHILDQVKTLGFRQATTTSISLGID 60
MAERANLVFHNKVIGGTAIKR+ISRLIDHFGMAYTSHILDQVKTLGFRQAT TSISLGID
Sbjct: 13 MAERANLVFHNKVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATDTSISLGID 192
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFS 120
DLLTIPSKGWLVQDAEQQS ILE+HHHYGNVHAVEKLRQSIEIWYATSEY RQEMNPNF
Sbjct: 193 DLLTIPSKGWLVQDAEQQSFILEQHHHYGNVHAVEKLRQSIEIWYATSEYFRQEMNPNFR 372
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 373 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 552
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVNTRNRMMSERIL 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT++ ISVNT+N MM ERI
Sbjct: 553 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIQRISVNTQNGMMPERIW 732
Query: 241 IQTLIGRVLADDIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRL 300
IQTLIGRVLADDIY GSRCI VRNQDIGIGLINRF QTQPI IRTPFTCRNTSWICRL
Sbjct: 733 IQTLIGRVLADDIYRGSRCIAVRNQDIGIGLINRFKTLQTQPISIRTPFTCRNTSWICRL 912
Query: 301 CYGRSPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKI 360
CYG+SP HG+LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE VR+P NGKI
Sbjct: 913 CYGQSPTHGHLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPYNGKI 1092
Query: 361 KFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQII 420
+FNE+ +PTRTRHGHPAFLCYIDLYVTIES DI+HNV IPPKSFLLVQN+QYVKSEQ+I
Sbjct: 1093QFNEDLVHPTRTRHGHPAFLCYIDLYVTIESGDIIHNVTIPPKSFLLVQNNQYVKSEQVI 1272
Query: 421 AEIRAGTYTLNLKEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGN 480
AEIRAGTYT NLKEKVRKH++SD EGEMHWST++YH SEF YSNVHILPKTSHLWILSG
Sbjct: 1273AEIRAGTYTFNLKEKVRKHVYSDLEGEMHWSTDVYHASEFRYSNVHILPKTSHLWILSGK 1452
Query: 481 SHKSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR------------------- 521
S++S +VS S+ KDQDQM+ H L T +R+ N L S +VR
Sbjct: 1453SYRSGSVSFSIRKDQDQMNIHYLSTGERDFCNLLASKKKVRHKLFRFNPSDKKERRISDY 1632
Query: 522 ------LCPDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVE 573
+ DHCHF HPTI DT++LLAK+RRNR IIPF F+SI+ER+ ELM IS+E
Sbjct: 1633SIFNQIISIDHCHFTHPTIFHDTTDLLAKRRRNRLIIPFQFQSIQERDKELMLASSISIE 1812
Query: 574 IPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKED-LIEYRGIREFKPKYQ 632
IPI+GI +NSILAYFDDPQYRTQSSGI KY+TIGI+SIF+KED LIEY+G++EFK KYQ
Sbjct: 1813IPINGIFRRNSILAYFDDPQYRTQSSGITKYRTIGINSIFKKEDFLIEYQGVKEFKTKYQ 1992
Query: 633 IKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELK 692
IKVD+FFFIP+EVHIL ESSSIMVRNNSI+ V+T ITLN +SRV GLVR+EK KKKIELK
Sbjct: 1993IKVDQFFFIPEEVHILPESSSIMVRNNSIVEVDTLITLNIRSRVRGLVRLEKKKKKIELK 2172
Query: 693 IFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKK 731
IFSGDI+FPGE+DKIS+H + + KKK ++ +K
Sbjct: 2173IFSGDIYFPGEMDKISRHXCRVDTTKNGKKKFKRKKNEK 2289
Score = 949 bits (2453), Expect = 0.0
Identities = 492/650 (75%), Positives = 551/650 (84%), Gaps = 3/650 (0%)
Frame = +2
Query: 684 KNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKTNWRYIQWITTT 743
+ KK++ K F G FP + + SA+LIPP VKK NSKE K K NW Y+QWIT T
Sbjct: 2147 RKKKRLN*KYFPGISIFPEKWIRYPDTSAVLIPPRTVKK-NSKEKKMK-NWIYVQWITIT 2320
Query: 744 KKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTS 803
KKKYFVLVRPVILY+IAD INLVKLFPQD+F+E DNLELKV+N+IL GNGKSIRGI DTS
Sbjct: 2321 KKKYFVLVRPVILYEIADRINLVKLFPQDMFQERDNLELKVINYILSGNGKSIRGISDTS 2500
Query: 804 IQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPS 863
IQLVRTCLVLNW++D+K SSIE A ASFVE+S GL+RYFLRIDLVKSHISYI KRNDPS
Sbjct: 2501 IQLVRTCLVLNWDQDKKFSSIENAHASFVEISIKGLVRYFLRIDLVKSHISYISKRNDPS 2680
Query: 864 SSGLISYNESDRININPFFSIY---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSN 920
S SD N+NPF+SIY K +Q+S +Q GT+R LL NKE + F+ILSSSN
Sbjct: 2681 SE---KKEGSDHTNMNPFYSIYIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSN 2851
Query: 921 CFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKIS 980
CFQ+ FN+ KY+NGIKE INQ +R+ IPIK SLGPLG+APQ+A+F FY LITHN+IS
Sbjct: 2852 CFQIRSFNHGKYYNGIKEGINQIQRDAMIPIKNSLGPLGIAPQVAHF-DFYRLITHNQIS 3028
Query: 981 SIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFP 1040
IK N QL+K KETFQV +YY +DENERIYKPDL +NIILNPF+LNW F+H NYCEKTF
Sbjct: 3029 IIK-NGQLDKLKETFQVFQYYFLDENERIYKPDLCSNIILNPFYLNWHFLHHNYCEKTFT 3205
Query: 1041 IISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEML 1100
I+SLGQFICENVCIVQTKN P+LKSGQ++TVQMD VGIR ANPYLATPGAT+HGHYGE+L
Sbjct: 3206 IMSLGQFICENVCIVQTKNAPHLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEIL 3385
Query: 1101 YEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIP 1160
EGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKR+D WN RIT ILGIP
Sbjct: 3386 SEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDTWNGRITKILGIP 3565
Query: 1161 WRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF 1220
W FLIGAELTIAQSRISLVNKIQ+VYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF
Sbjct: 3566 WGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVF 3745
Query: 1221 SPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALR 1280
PGELIGLLRA+R GR+LEE+ICYR LLLGITKTSLNTQSFISEASFQETARVL+KAALR
Sbjct: 3746 LPGELIGLLRAERAGRSLEEAICYRVLLLGITKTSLNTQSFISEASFQETARVLSKAALR 3925
Query: 1281 GRIDWLKGLKENLVLGGIIPVGTGFKKIGDRSSARQDTKITLETIKIIRG 1330
GRIDWLKGLKEN+VLGG+IPVGTGFK+I +RS RQ K+T + + G
Sbjct: 3926 GRIDWLKGLKENVVLGGMIPVGTGFKRIMNRSKQRQYNKMTRKKKNLFEG 4075
>CB063796 GP|15778189|g rpoC2 {Glycine max}, partial (6%)
Length = 422
Score = 176 bits (447), Expect = 5e-44
Identities = 96/142 (67%), Positives = 112/142 (78%), Gaps = 1/142 (0%)
Frame = +3
Query: 861 DPSSSGLISYNESDRININPFFSI-YKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSS 919
+P S I NESDR INPFFSI +E IQQSLS+ HGTIRMLLNRN++ RS IILSSS
Sbjct: 3 NPPGSRFILDNESDRTTINPFFSIDLREKIQQSLSKNHGTIRMLLNRNEKCRSLIILSSS 182
Query: 920 NCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKI 979
NCFQ+ FN+ KY+NGIKE INQ +R+ IPIK SLGPLG+APQ+A+ F FY LITHN+I
Sbjct: 183 NCFQIRSFNHGKYYNGIKEGINQIQRDAMIPIKNSLGPLGIAPQVAH-FDFYRLITHNQI 359
Query: 980 SSIKKNLQLNKFKETFQVIKYY 1001
S I KN QL+K KETFQV +YY
Sbjct: 360 SII-KNGQLDKLKETFQVFQYY 422
>TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragment) , partial
(96%)
Length = 2604
Score = 50.8 bits (120), Expect = 4e-06
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Frame = +1
Query: 1098 EMLYEG--DILVTFIYE-KSRSGDITQGL-PKVEQVLEVRSIDSISMNLEKRIDAWNERI 1153
EM G DI FI K + D+ QG P E +L+ ++ +++ + +D
Sbjct: 349 EMTLRGIPDINKVFIKNTKVQKFDVNQGFKPNEEWMLDTEGVNLLAVMCHEDVDVTRTTS 528
Query: 1154 TGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSE 1213
++ + L I R +L+++++ V G +++ RH+ I+ +T
Sbjct: 529 NHLIEVI------EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMT------- 669
Query: 1214 DGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSF--ISEASFQETA 1271
YR L+ IT+ +N + SF+ET
Sbjct: 670 ------------------------------YRGHLMAITRHGINRNDTGPMMRCSFEETV 759
Query: 1272 RVLAKAALRGRIDWLKGLKENLVLGGIIPVGTG 1304
+L AA+ D+L+G+ EN++LG + P+GTG
Sbjct: 760 DILLDAAVYAETDYLRGVTENIMLGQLAPIGTG 858
>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragment) , complete
Length = 1826
Score = 50.1 bits (118), Expect = 7e-06
Identities = 24/67 (35%), Positives = 41/67 (60%), Gaps = 2/67 (2%)
Frame = +3
Query: 1240 ESICYRTLLLGITKTSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENLVLGG 1297
+++ YR L+ IT+ +N + SF+ET +L AA+ D+L+G+ EN++LG
Sbjct: 180 DTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQ 359
Query: 1298 IIPVGTG 1304
+ P+GTG
Sbjct: 360 LAPIGTG 380
>NP005385 DNA-directed RNA polymerase
Length = 2934
Score = 50.1 bits (118), Expect = 7e-06
Identities = 23/60 (38%), Positives = 41/60 (68%)
Frame = +1
Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVR 224
++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+++ GTVR
Sbjct: 28 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMLKYD--GTVR 201
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/67 (37%), Positives = 39/67 (57%), Gaps = 2/67 (2%)
Frame = +1
Query: 1240 ESICYRTLLLGITKTSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENLVLGG 1297
E++ YR L+ IT+ +N + SF+ET +L AA D L+G+ EN++LG
Sbjct: 1753 ETMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAAYAETDSLRGVTENIILGQ 1932
Query: 1298 IIPVGTG 1304
+ P+GTG
Sbjct: 1933 LAPIGTG 1953
Score = 47.8 bits (112), Expect = 3e-05
Identities = 21/34 (61%), Positives = 26/34 (75%)
Frame = +1
Query: 310 NLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 343
+LV GE +G++A QSIGEP TQ+TL TFH GV
Sbjct: 799 SLVVPGEMIGVVAAQSIGEPATQMTLNTFHFAGV 900
>TC220780 weakly similar to UP|Q9LVH0 (Q9LVH0) DNA-directed RNA polymerase II
largest chain, partial (12%)
Length = 1049
Score = 46.6 bits (109), Expect = 7e-05
Identities = 47/201 (23%), Positives = 91/201 (44%), Gaps = 8/201 (3%)
Frame = +3
Query: 1119 ITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAE-------LTI 1171
+ +G+ V++V+ + + L + E + G+ GI R + L I
Sbjct: 99 VVKGIKTVDRVVISKDTKAEKFRLLVEGTGFRE-VMGVEGIDGRKTVSNHIHEVRDTLGI 275
Query: 1172 AQSRISLVNKIQ-RVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLR 1230
+R S+V +I+ + + G++I RH+ ++ +T+ G ++G+ R
Sbjct: 276 EAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTAT--------------GHILGINR 413
Query: 1231 AQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 1290
GI+K +S + ASF+ TA +L +A++RGR D + G+
Sbjct: 414 ------------------FGISKMG---KSVLMLASFERTADILFQASVRGRDDSIGGVS 530
Query: 1291 ENLVLGGIIPVGTGFKKIGDR 1311
E++++G I +GTG K+ R
Sbjct: 531 ESIIMGIPIQIGTGMIKVKQR 593
>TC233527 weakly similar to UP|Q9LVH0 (Q9LVH0) DNA-directed RNA polymerase II
largest chain, partial (10%)
Length = 609
Score = 45.4 bits (106), Expect = 2e-04
Identities = 21/39 (53%), Positives = 24/39 (60%)
Frame = +1
Query: 305 SPIHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 343
S H +E G VG SIGEPGTQ+TL+TFH GV
Sbjct: 172 SRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAGV 288
>TC207571 weakly similar to UP|O65470 (O65470) Serine/threonine kinase-like
protein , partial (23%)
Length = 1117
Score = 42.0 bits (97), Expect = 0.002
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 325 SIGEPGTQLTLRTFHTGGVFTG 346
SIGEPGTQLTLRTF+ G VFTG
Sbjct: 1051 SIGEPGTQLTLRTFYIGKVFTG 1116
>CD398942 weakly similar to GP|21592666|gb| receptor-like protein kinase-like
protein {Arabidopsis thaliana}, partial (7%)
Length = 652
Score = 32.7 bits (73), Expect = 1.1
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 754 VILYDIADSINL--VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCL 811
++L I+ S+NL + P+D+F W L+ F+ YGN R L RTC
Sbjct: 250 ILLSPISCSLNLRCILKVPKDIFNGWSAP*LRRYTFVCYGNHN**R--------LFRTCS 405
Query: 812 VLNW--NEDEKSSSIEEALASFVE 833
+ NW N +IE L + VE
Sbjct: 406 LQNWVHNLFPTILTIERCLQNGVE 477
>BE806723
Length = 389
Score = 30.4 bits (67), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -3
Query: 630 KYQIKVDRFFFIPQEVHILSESSSIMVRNNSI 661
++++ + FFF QE H L S +RN +I
Sbjct: 96 RFEVSISHFFFFQQE*HTLCTQGSYFIRNQTI 1
>TC219981 similar to UP|Q8LBQ5 (Q8LBQ5) Receptor-like protein kinase-like
protein, partial (19%)
Length = 772
Score = 30.0 bits (66), Expect = 7.1
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 754 VILYDIADSINL--VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCL 811
++L I+ S+NL + P+D+F W L+ F+ YGN R L R C
Sbjct: 579 ILLSPISCSLNLRCILKVPKDIFNGWSAP*LRRYTFVCYGNHN**R--------LFRACS 424
Query: 812 VLNW 815
+ NW
Sbjct: 423 LHNW 412
>BE023539
Length = 324
Score = 29.6 bits (65), Expect = 9.2
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +2
Query: 724 NSKESKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELK 783
N K K + W W+TT +K + L+D+ S L L L KEW+++E+
Sbjct: 116 NGKRHKIASGWE--DWMTTEVRKAKL---NTYLFDLKSSFRLGDLSEVGLEKEWNHVEIS 280
Query: 784 VLNFI 788
I
Sbjct: 281 YAGLI 295
>TC233650 similar to UP|Q84JC9 (Q84JC9) BZIP transcription factor, partial
(17%)
Length = 792
Score = 29.6 bits (65), Expect = 9.2
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -1
Query: 765 LVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKS 821
L LF + +F W E ++L+F+LY +G + G S +L R C W + E+S
Sbjct: 420 LPSLFYKPVF*LWT--EPRILDFLLYAHGVDLAGWFS*SRRLRRKC----WRQKEES 268
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,481,040
Number of Sequences: 63676
Number of extensions: 852998
Number of successful extensions: 4696
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4668
length of query: 1332
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1223
effective length of database: 5,698,948
effective search space: 6969813404
effective search space used: 6969813404
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Description of BAB33196.1