BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33188.1 100 aa
(100 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203702 weakly similar to GB|AAP68215.1|31711718|BT008776 At1g5... 29 0.32
NP004994 G/HBF-1 29 0.42
AW395238 weakly similar to GP|10176939|dbj DNAJ-like protein {Ar... 29 0.42
TC217376 similar to UP|Q6ZXK5 (Q6ZXK5) Membrane related protein,... 28 0.94
TC208403 similar to UP|O49449 (O49449) Protein phosphatase 2C-li... 27 1.2
TC208365 weakly similar to UP|Q9YGG2 (Q9YGG2) Melanoma receptor ... 27 1.2
TC213399 27 1.6
BG236898 27 2.1
TC217377 26 2.7
TC206614 UP|Q40214 (Q40214) RAB7D, complete 26 2.7
CK606126 26 3.6
TC224925 homologue to UP|Q43453 (Q43453) G.max mRNA from stress-... 26 3.6
TC218386 26 3.6
TC214572 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alp... 26 3.6
BI969714 26 3.6
TC224923 emb|X02623.1|GMRN18S Soybean (Glycine max) 18S ribosoma... 26 3.6
TC224300 weakly similar to UP|O23027 (O23027) Aldehyde oxidase, ... 26 3.6
TC224991 homologue to UP|S25K_SOYBN (P10742) Stem 31 kDa glycopr... 26 3.6
TC217681 similar to PIR|E96809|E96809 protein F28K19.24 [importe... 25 4.7
TC212818 weakly similar to UP|Q9FNG2 (Q9FNG2) Emb|CAB81925.1, pa... 25 6.1
>TC203702 weakly similar to GB|AAP68215.1|31711718|BT008776 At1g51580
{Arabidopsis thaliana;} , partial (25%)
Length = 1642
Score = 29.3 bits (64), Expect = 0.32
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = -1
Query: 11 KKRQKLEQKYHLIRRSSKKEISKVPSLS--EKWKIHGKLESLPRNSAPTRLHRRCFSTGR 68
K RQ + HL+ + E S+ E W I + + P R H R TG
Sbjct: 1447 KARQMSRFRNHLLCALTNLEFLASSSVRPRESWVIRAPVTANPTRKGQLRFHSRLKKTGH 1268
Query: 69 PRANYRDFGLSGHTLREMVHE 89
+N+R F LS T + HE
Sbjct: 1267 -GSNFRIFLLSSLTSCRIRHE 1208
>NP004994 G/HBF-1
Length = 1137
Score = 28.9 bits (63), Expect = 0.42
Identities = 12/45 (26%), Positives = 24/45 (52%)
Frame = +3
Query: 46 KLESLPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLREMVHEC 90
++ S+P+ P L RRCF + R ++ G ++ R+ + +C
Sbjct: 162 RVSSIPQKPTPFGLRRRCFDS---RQEFKPSGFRLYSSRQRIRDC 287
>AW395238 weakly similar to GP|10176939|dbj DNAJ-like protein {Arabidopsis
thaliana}, partial (13%)
Length = 425
Score = 28.9 bits (63), Expect = 0.42
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 11 KKRQKLEQKYHLIRRSSKKEISKVPSL 37
+KRQ+L QK+H++ S+ I VP L
Sbjct: 97 QKRQELNQKHHIVMPPSRSSIEFVPML 17
>TC217376 similar to UP|Q6ZXK5 (Q6ZXK5) Membrane related protein, partial
(68%)
Length = 1652
Score = 27.7 bits (60), Expect = 0.94
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 16 LEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRR 62
LEQ + +S + S+ +KW HGKL+SL L RR
Sbjct: 908 LEQWNQIEVMAS*LPVKSCSSIMKKWAFHGKLQSLE*GKGCGELFRR 1048
>TC208403 similar to UP|O49449 (O49449) Protein phosphatase 2C-like protein,
partial (94%)
Length = 1106
Score = 27.3 bits (59), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 45 GKLESLPRNSAPTRLHR--RCFSTGRPRANYRDFGLSGHTL 83
GKL S PR + ++ H RCF G +++ GLSGH +
Sbjct: 366 GKLSS-PRFLSQSKSHALSRCFGKGGSANSWQHHGLSGHQI 247
>TC208365 weakly similar to UP|Q9YGG2 (Q9YGG2) Melanoma receptor tyrosine
kinase precursor (Fragment), partial (63%)
Length = 719
Score = 27.3 bits (59), Expect = 1.2
Identities = 21/92 (22%), Positives = 39/92 (41%), Gaps = 2/92 (2%)
Frame = +2
Query: 8 QREKKRQKL--EQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRRCFS 65
++E+K QKL E++ L+R+ +P + + S+PR S + +C+S
Sbjct: 365 KQEEKLQKLIEEEEVRLLRKEMVPRAQLMPYFDKPFFPQRSSRSIPRESCLHMMSSKCWS 544
Query: 66 TGRPRANYRDFGLSGHTLREMVHECLLPGATR 97
Y TL+ + + L GA +
Sbjct: 545 CSVGNEIYNLHHYGHQTLKPIK*KALREGACK 640
>TC213399
Length = 524
Score = 26.9 bits (58), Expect = 1.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +1
Query: 12 KRQKLEQKYHLIRRSSKKEISKVPSLSEKW--KIHGKL 47
KRQ+L + YH + S + K L E+W K HG L
Sbjct: 355 KRQQLYEYYHPLEFSPNIGLEKKTKLMEEWWGKAHGLL 468
>BG236898
Length = 343
Score = 26.6 bits (57), Expect = 2.1
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Frame = -2
Query: 32 SKVPSLSEKWKIHGKLESLPRN--SAPTRLHRRCFST 66
+K PSLSE ++ KL S+P + S P + +RC T
Sbjct: 276 AKSPSLSEALEVTVKLVSIPASTLSRPWKTAKRCAET 166
>TC217377
Length = 917
Score = 26.2 bits (56), Expect = 2.7
Identities = 15/47 (31%), Positives = 22/47 (45%)
Frame = +1
Query: 16 LEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRR 62
LEQ + +S + S+ +KW HG+L+SL L RR
Sbjct: 82 LEQWNQIEVMAS*LPVKSCSSIMKKWAFHGRLQSLE*GKECGELFRR 222
>TC206614 UP|Q40214 (Q40214) RAB7D, complete
Length = 1075
Score = 26.2 bits (56), Expect = 2.7
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Frame = +1
Query: 6 LIQREKKRQKLEQK--YHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRL 59
L R K+R + Q+ YH +R KK++ S K+H ++ + + PT+L
Sbjct: 520 LFLRRKQRHGVLQRETYHTLRPQQKKDLMLKLLSSA*QKMHSRMNLKKKCTCPTQL 687
>CK606126
Length = 592
Score = 25.8 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 52 RNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLR 84
R PT HRR PR+NY F + +R
Sbjct: 60 RRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIR 158
>TC224925 homologue to UP|Q43453 (Q43453) G.max mRNA from stress-induced
gene (H4), complete
Length = 1041
Score = 25.8 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 52 RNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLR 84
R PT HRR PR+NY F + +R
Sbjct: 60 RRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIR 158
>TC218386
Length = 802
Score = 25.8 bits (55), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +3
Query: 1 MARKSLIQREKKRQKLEQKYHLIRRSSKKE 30
+A S ++EKK+++LE H ++ KKE
Sbjct: 135 LASSSYKRKEKKKRRLELDTHTSQKEKKKE 224
>TC214572 homologue to UP|TBA3_ARATH (P20363) Tubulin alpha-3/alpha-5 chain,
partial (57%)
Length = 961
Score = 25.8 bits (55), Expect = 3.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 38 SEKWKIHGKLESLPRNSAPTRLHRRCF 64
S+ WK+HG L + R R CF
Sbjct: 345 SKTWKVHGMLPDVSRRRCSQRCKCSCF 425
>BI969714
Length = 587
Score = 25.8 bits (55), Expect = 3.6
Identities = 13/61 (21%), Positives = 30/61 (48%)
Frame = -3
Query: 3 RKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSEKWKIHGKLESLPRNSAPTRLHRR 62
R L +++KK++ YH ++++E + + +G+ + LP++ TR +
Sbjct: 354 RAPLHKKKKKKRCPTTSYHRKNNNNEREYVRTKYVDVSHNDNGRKKRLPKHLHSTRYNIE 175
Query: 63 C 63
C
Sbjct: 174 C 172
>TC224923 emb|X02623.1|GMRN18S Soybean (Glycine max) 18S ribosomal RNA,
complete
Length = 3227
Score = 25.8 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 52 RNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLR 84
R PT HRR PR+NY F + +R
Sbjct: 1458 RRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIR 1360
>TC224300 weakly similar to UP|O23027 (O23027) Aldehyde oxidase, partial (9%)
Length = 409
Score = 25.8 bits (55), Expect = 3.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 12 KRQKLEQKYHLIRRSSKKEISKVPSLSE 39
+R KL QK++ I K+ IS+VP++ E
Sbjct: 321 QRTKLVQKFNRINTWKKRGISRVPAVIE 404
>TC224991 homologue to UP|S25K_SOYBN (P10742) Stem 31 kDa glycoprotein
precursor (Vegetative storage protein VSP25)
(Fragment), partial (16%)
Length = 904
Score = 25.8 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 52 RNSAPTRLHRRCFSTGRPRANYRDFGLSGHTLR 84
R PT HRR PR+NY F + +R
Sbjct: 58 RRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIR 156
>TC217681 similar to PIR|E96809|E96809 protein F28K19.24 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(36%)
Length = 1065
Score = 25.4 bits (54), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 52 RNSAPTRLHRRCFSTGRPRANYRDFGLS 79
R PT + RC+S G R++Y D G++
Sbjct: 236 RRRRPTEI--RCWSLGSSRSDYEDVGIT 313
>TC212818 weakly similar to UP|Q9FNG2 (Q9FNG2) Emb|CAB81925.1, partial (42%)
Length = 854
Score = 25.0 bits (53), Expect = 6.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 14 QKLEQKYHLIRRSSKKEISKVPSLSEK-WKIHGKLESLPR 52
+KL + HL++ + S VPSL EK W+ H + P+
Sbjct: 339 KKLPKPPHLMQPNHFISSSNVPSLDEKLWRNHFPSQDFPQ 220
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,935,661
Number of Sequences: 63676
Number of extensions: 66079
Number of successful extensions: 405
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of query: 100
length of database: 12,639,632
effective HSP length: 76
effective length of query: 24
effective length of database: 7,800,256
effective search space: 187206144
effective search space used: 187206144
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Description of BAB33188.1