BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33185.1 126 aa
(126 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218737 homologue to UP|YCF3_TOBAC (P12204) Photosystem I assem... 160 1e-40
TC205633 similar to UP|O81280 (O81280) Peroxisomal targeting sig... 34 0.020
TC205632 similar to UP|O82444 (O82444) Peroxisomal targeting seq... 33 0.026
TC207489 weakly similar to UP|Q94AA8 (Q94AA8) AT5g63200/MDC12_17... 33 0.026
AW707097 similar to EGAD|168613|CPn Lon ATP-dependent protease {... 30 0.22
BF425630 30 0.22
TC215778 similar to UP|OM20_SOLTU (P92792) Mitochondrial import ... 30 0.22
TC215777 similar to UP|OM20_SOLTU (P92792) Mitochondrial import ... 29 0.65
AW395021 28 0.84
TC211124 weakly similar to UP|Q94C27 (Q94C27) At1g70590/F5A18_23... 28 1.1
AW459102 28 1.4
TC222203 homologue to UP|Q6XBM5 (Q6XBM5) 26S proteasome subunit ... 27 2.5
NP005041 sti (stress inducible protein) 27 3.2
TC226160 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90,... 26 5.5
AW278601 25 7.1
TC228037 25 9.3
TC226161 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90,... 25 9.3
TC215956 similar to UP|Q9SI76 (Q9SI76) F23N19.10, partial (25%) 25 9.3
AW472148 25 9.3
>TC218737 homologue to UP|YCF3_TOBAC (P12204) Photosystem I assembly protein
ycf3, partial (70%)
Length = 1258
Score = 160 bits (406), Expect = 1e-40
Identities = 75/76 (98%), Positives = 76/76 (99%)
Frame = +2
Query: 1 MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60
MSAQSEGNYAEALQNYYEAMRLE+DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN
Sbjct: 1001 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 1180
Query: 61 PFLPQAFNNMAVICHY 76
PFLPQAFNNMAVICHY
Sbjct: 1181 PFLPQAFNNMAVICHY 1228
>TC205633 similar to UP|O81280 (O81280) Peroxisomal targeting signal-1
receptor, partial (64%)
Length = 1643
Score = 33.9 bits (76), Expect = 0.020
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +1
Query: 10 AEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 69
A+A+ Y +A+ L+ + Y R++ N+G+ + + G + +++ YY RAL NP A+
Sbjct: 1075 ADAIMAYQQALDLKPN-YVRAWA--NMGISYANQGMYDESIRYYVRALAMNPKAENAWQY 1245
Query: 70 MAV 72
+ +
Sbjct: 1246 LRI 1254
>TC205632 similar to UP|O82444 (O82444) Peroxisomal targeting sequence 1
receptor (Fragment), partial (24%)
Length = 707
Score = 33.5 bits (75), Expect = 0.026
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 10 AEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 69
A+A+ Y +A+ L+ + Y R++ N+G+ + + G + +++ YY RAL NP A+
Sbjct: 134 ADAIMAYQQALDLKPN-YVRAWA--NMGISYANQGMYDESVRYYVRALAMNPKAENAWQY 304
Query: 70 MAV 72
+ +
Sbjct: 305 LRI 313
>TC207489 weakly similar to UP|Q94AA8 (Q94AA8) AT5g63200/MDC12_17, partial
(40%)
Length = 800
Score = 33.5 bits (75), Expect = 0.026
Identities = 24/99 (24%), Positives = 48/99 (48%)
Frame = +1
Query: 1 MSAQSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60
+S Q ++A + Y +A+ L IL N+G+++ ++ +A + ++LE
Sbjct: 268 VSLQLSEEPSQAEEVYKQALSLATTK-QAHVILSNLGILYRHQKQYQRAKAMFTKSLELQ 444
Query: 61 PFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAE 99
P AFNN+ ++ + +G E A+ FD+A +
Sbjct: 445 PGYAPAFNNLGLV-------FVAEGLLEEAKYCFDKALQ 540
>AW707097 similar to EGAD|168613|CPn Lon ATP-dependent protease {Chlamydia
pneumoniae}, partial (2%)
Length = 379
Score = 30.4 bits (67), Expect = 0.22
Identities = 17/58 (29%), Positives = 29/58 (49%)
Frame = +2
Query: 54 FRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGN 111
F+A P+ N + + + QA D+ + +FD+AA+Y++QAI P N
Sbjct: 185 FKARRTLTINPKXHNTL*YLENTHTSQAFLIPDANKTKVYFDKAAKYFQQAINKNPSN 358
>BF425630
Length = 421
Score = 30.4 bits (67), Expect = 0.22
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 7 GNYAEALQNYYEAMRLEVD-----PYDRSYILYNIGLIHTSNGEHTKALEYYFRALE 58
GNY A + E +R+ ++ +D + + NIGL + +++K++EY+ +ALE
Sbjct: 44 GNYELAYTYFCEPLRVCIELQGEEHFDTAKLFNNIGLSLYNLHDYSKSMEYFQKALE 214
>TC215778 similar to UP|OM20_SOLTU (P92792) Mitochondrial import receptor
subunit TOM20 (Translocase of outer membrane 20 kDa
subunit), partial (72%)
Length = 657
Score = 30.4 bits (67), Expect = 0.22
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 64 PQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGN 111
P+ + + + + QA D + A+ +FD+AAEY++QA+ P N
Sbjct: 79 PKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSN 222
>TC215777 similar to UP|OM20_SOLTU (P92792) Mitochondrial import receptor
subunit TOM20 (Translocase of outer membrane 20 kDa
subunit), partial (95%)
Length = 1035
Score = 28.9 bits (63), Expect = 0.65
Identities = 15/48 (31%), Positives = 26/48 (53%)
Frame = +3
Query: 64 PQAFNNMAVICHYRGEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGN 111
P+ + + + + QA D E A+ +FD+AA Y++QA+ P N
Sbjct: 381 PKKHDTLWCLGNAHTSQAFLIPDQEEAKVYFDKAAVYFQQAVDEDPSN 524
>AW395021
Length = 441
Score = 28.5 bits (62), Expect = 0.84
Identities = 15/51 (29%), Positives = 25/51 (48%)
Frame = +2
Query: 23 EVDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 73
E++P + Y L L H GEH A + L R+PF +A+ + ++
Sbjct: 161 ELEPEESEYPLLKAHL-HMRYGEHELAANVFEELLHRDPFHVEAYRGLLML 310
>TC211124 weakly similar to UP|Q94C27 (Q94C27) At1g70590/F5A18_23, partial
(52%)
Length = 781
Score = 28.1 bits (61), Expect = 1.1
Identities = 19/66 (28%), Positives = 34/66 (50%)
Frame = +2
Query: 33 LYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAES 92
+ + GLI+ GE KA+E+Y +A E P A N+ + + + E ++E+A
Sbjct: 461 MVDAGLIYWERGEKPKAMEFYHKAAELGN--PSAQCNLG-LSYLQAEPP----NTELAVK 619
Query: 93 WFDQAA 98
W +A+
Sbjct: 620 WLHKAS 637
>AW459102
Length = 428
Score = 27.7 bits (60), Expect = 1.4
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = +3
Query: 80 QAIRQGDSEIAESWFDQAAEYWKQAIALTPGN 111
QA D + A+ +FD+AA Y++QA+ P N
Sbjct: 27 QAFLIPDQDEAKVYFDKAAXYFQQAVDEDPSN 122
>TC222203 homologue to UP|Q6XBM5 (Q6XBM5) 26S proteasome subunit RPN2b
(Fragment), partial (15%)
Length = 466
Score = 26.9 bits (58), Expect = 2.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 26 PYDRSYILYNIGLIHTSNGEHTK 48
PY LY +GLIH ++GE K
Sbjct: 117 PYSEGGALYALGLIHANHGEGIK 185
>NP005041 sti (stress inducible protein)
Length = 1710
Score = 26.6 bits (57), Expect = 3.2
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = +1
Query: 79 EQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQN 117
E+A +G++ + F A ++ AIAL+P N++ N
Sbjct: 7 EEAKAKGNAAFSAGDFAAAVRHFSDAIALSPSNHVLYSN 123
>TC226160 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90, partial
(24%)
Length = 635
Score = 25.8 bits (55), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (61%)
Frame = +1
Query: 94 FDQAAEYWKQAIALTPGNYIEAQNWLKIT 122
FD +A YW + A+TPG+ +E ++ T
Sbjct: 229 FDPSAIYWLFSWAVTPGSELEEFSFFSCT 315
>AW278601
Length = 254
Score = 25.4 bits (54), Expect = 7.1
Identities = 20/77 (25%), Positives = 30/77 (37%), Gaps = 2/77 (2%)
Frame = +2
Query: 33 LYNIGLIHTSNGEHTKALEYYFRALERNP--FLPQAFNNMAVICHYRGEQAIRQGDSEIA 90
+YN+ IH K L + + +NP +LP M V + + G
Sbjct: 29 MYNLYFIHCDT--RLKGLIVEGKTVWKNPSSYLPGRMAPMKVFYQFMSFAYVLLGIF--- 193
Query: 91 ESWFDQAAEYWKQAIAL 107
WF Q A +WK+ L
Sbjct: 194 --WFSQYARFWKEVFPL 238
>TC228037
Length = 1459
Score = 25.0 bits (53), Expect = 9.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 26 PYDRSYILYNIGLIHTSNGEHTKALEY 52
PYDR + + N+ + +HTKA Y
Sbjct: 1312 PYDRGHAMNNLKMSFKLPSKHTKASTY 1232
>TC226161 weakly similar to UP|Q93Z16 (Q93Z16) AT4g21150/F7J7_90, partial
(42%)
Length = 1097
Score = 25.0 bits (53), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +1
Query: 94 FDQAAEYWKQAIALTPGNYIEAQNWLKIT 122
FD +A YW A+TPG+ +E ++ T
Sbjct: 628 FDPSAIYWLFGWAVTPGSELEEFSFFSST 714
>TC215956 similar to UP|Q9SI76 (Q9SI76) F23N19.10, partial (25%)
Length = 753
Score = 25.0 bits (53), Expect = 9.3
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 78 GEQAIRQGDSEIAESWFDQAAEYWKQAIALTPGNYIEAQN 117
G++A +G++ + + A ++ IAL P N++ N
Sbjct: 131 GDEAKAKGNAAFSSGDYPAAIHHFSDTIALAPSNHVLYSN 250
>AW472148
Length = 391
Score = 25.0 bits (53), Expect = 9.3
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = -3
Query: 4 QSEGNYAEALQNYYEAMRLEVDPYDRSYILYNIGLIH 40
++ G Y E Y + E D YDR++IL + L+H
Sbjct: 359 ENSGVYIELYVLY*HSNHNEDDIYDRAHILIFVCLLH 249
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,481,018
Number of Sequences: 63676
Number of extensions: 63678
Number of successful extensions: 255
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of query: 126
length of database: 12,639,632
effective HSP length: 86
effective length of query: 40
effective length of database: 7,163,496
effective search space: 286539840
effective search space used: 286539840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Description of BAB33185.1