BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BAB33177.1 508 aa
(508 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233840 UP|MATK_SOYBN (Q9TKS6) Maturase K (Intron maturase), co... 738 0.0
TC233756 similar to UP|Q93ZI1 (Q93ZI1) AT3g12300/F28J15_117, par... 33 0.30
BQ081719 33 0.39
TC213373 similar to UP|Q9FIL7 (Q9FIL7) Similarity to protein kin... 31 1.1
AW597712 weakly similar to PIR|T06458|T064 nucleolin homolog - g... 30 2.0
TC223054 30 3.3
TC228817 similar to UP|Q9SHQ7 (Q9SHQ7) F1K23.5, partial (75%) 30 3.3
TC218314 30 3.3
TC233763 30 3.3
CO982607 30 3.3
AW153129 30 3.3
TC209789 homologue to UP|Q75T80 (Q75T80) Starch synthase I precu... 30 3.3
TC226707 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter... 29 4.4
TC219203 similar to UP|Q6JCR5 (Q6JCR5) Cytochrome b (Fragment), ... 29 4.4
TC211146 similar to UP|Q9ZVN9 (Q9ZVN9) T7A14.8 protein (P44/SSL1... 29 4.4
CA802337 29 4.4
AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica cu... 29 4.4
TC222677 similar to UP|FUT1_PEA (Q9M5Q1) Galactoside 2-alpha-L-f... 29 4.4
TC220138 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {A... 29 4.4
>TC233840 UP|MATK_SOYBN (Q9TKS6) Maturase K (Intron maturase), complete
Length = 1518
Score = 738 bits (1904), Expect = 0.0
Identities = 373/509 (73%), Positives = 414/509 (81%), Gaps = 2/509 (0%)
Frame = +1
Query: 1 MEEYQLYLELDRSRQQDFLYPLVFHEYIYGLAYSHDLNRSIFVENFGYDNKYSLLIVKRL 60
MEE + YLEL RSR QD LYPL F E IYGLA H SIFVEN GY+NK+SLLIVKRL
Sbjct: 1 MEESRAYLELHRSRHQDTLYPLFFRESIYGLACGHG---SIFVENVGYNNKFSLLIVKRL 171
Query: 61 ITRMYQQNHLIISANDSNKNRFLRYNKNFYSQIISEGFAIIVEILFSLQLS-SSLEEAEI 119
ITRMYQQ H II NDSNKN F+ YN +FYSQII EGF ++VEILFSLQ SSL E EI
Sbjct: 172 ITRMYQQTHFIIFTNDSNKNPFMGYNNHFYSQIILEGFVVVVEILFSLQFCISSLREFEI 351
Query: 120 IKSYKNLRSIHSIFPFFEDKVTYLNYISDIRVPYPIHLEILVQILRYWVKDAPLFHLLRL 179
+KSY NLRSIHSIFPFFEDK+ YLN+ SDIR+PYPIHLEILVQILRYW+KD FHLLR
Sbjct: 352 VKSYNNLRSIHSIFPFFEDKLIYLNHESDIRIPYPIHLEILVQILRYWIKDVSFFHLLRF 531
Query: 180 FLYDYCNWNSIFIPQKSIYTF-SKKNPRFFFFLYNFYVCEYESIFFFLRTKSFHLRLKSF 238
F Y NWNSIF P+K I TF SK NPRFF FLYN YV EYESIF FLR KS LRLK F
Sbjct: 532 FFSYYYNWNSIFTPKKWISTFFSKSNPRFFLFLYNLYVWEYESIFLFLRNKSSKLRLKYF 711
Query: 239 RVFFERIFFYAKKGHLVEVFVKDFFSTLTFFKDPFIHYVRYQGKSILASKNLPILMNKWK 298
RVFFERIFFY K HLVEV VKD TL+FFKD F+HYVRYQGKSIL SKN P+L+NKWK
Sbjct: 712 RVFFERIFFYEKIEHLVEVSVKDCSYTLSFFKDTFMHYVRYQGKSILVSKNTPLLINKWK 891
Query: 299 YYFIHLWQCYFDVWSQPRTIRINQLSEYSFHFLGYFLKVGLKHSVVRGQMLQNGFLIKII 358
YYFI+LWQC+FD+WS+P TI INQLS++SFHFLGYFL + SVVR QMLQN FLIK++
Sbjct: 892 YYFIYLWQCHFDIWSRPGTIHINQLSQHSFHFLGYFLSIRPNLSVVRNQMLQNSFLIKMV 1071
Query: 359 IKKLDIIVPIIPIIRLLAKSKFCNVLGNPLSKPSWADLSDFEIIARFLRICRNLSHYYNG 418
+K+LD IVPIIP+IR LAK+KFCNV +P+SKP W +LSDF+II RFLRICRN SHYYNG
Sbjct: 1072MKRLDTIVPIIPLIRSLAKAKFCNVFAHPISKPVWPNLSDFDIIDRFLRICRNFSHYYNG 1251
Query: 419 SSKKKSLYRIKYILRLSCIKTLACKHKSTVRAFSKRLGSEELLEEFFTEEEEILSLIFPT 478
S+KKKSLY+I+YILRLSCIKTLA KHKST R F KRLGSE+LLEEFFTEEEE SLIFP
Sbjct: 1252SAKKKSLYQIRYILRLSCIKTLARKHKSTARTFLKRLGSEKLLEEFFTEEEETFSLIFPR 1431
Query: 479 TSSTLRRLHRNRIWYLDILFSNDNDLINH 507
TS TL+RL+ RIWYLDIL ND +NH
Sbjct: 1432TSFTLQRLYIGRIWYLDILVR--NDFVNH 1512
>TC233756 similar to UP|Q93ZI1 (Q93ZI1) AT3g12300/F28J15_117, partial (41%)
Length = 491
Score = 33.1 bits (74), Expect = 0.30
Identities = 22/63 (34%), Positives = 28/63 (43%)
Frame = -1
Query: 377 KSKFCNVLGNPLSKPSWADLSDFEIIARFLRICRNLSHYYNGSSKKKSLYRIKYILRLSC 436
K KFC + NPL +WADL + AR R+ S K + +KY R
Sbjct: 431 KLKFCKLWVNPLDTQTWADLHT*KFEARNRRL--------TFLSSKT*ISNVKYFFRFLT 276
Query: 437 IKT 439
IKT
Sbjct: 275 IKT 267
>BQ081719
Length = 271
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/89 (26%), Positives = 39/89 (42%), Gaps = 1/89 (1%)
Frame = -2
Query: 322 QLSEYSFHFLGYFLKVGLKHSVVRGQMLQNGFLIKIIIKKLDII-VPIIPIIRLLAKSKF 380
++SE FHFL FL G+++ + + L + VP++ + LL S F
Sbjct: 228 EISETKFHFLVIFL*-------------SQGYMVILFVYGLAALCVPLLSTVYLLLSSSF 88
Query: 381 CNVLGNPLSKPSWADLSDFEIIARFLRIC 409
CN++ N ++ S II F C
Sbjct: 87 CNLIQNGRNEVKAYKSSVIIIIFSFFPFC 1
>TC213373 similar to UP|Q9FIL7 (Q9FIL7) Similarity to protein kinase, partial
(17%)
Length = 832
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 272 PFIHYVRYQGKSILASKNLPILMNKWKYYFIHLWQ 306
PF Y Q + + ++ P LMN W Y IHLW+
Sbjct: 434 PFQAYY-LQCQMMQRNEKTPFLMNSWNYQMIHLWK 333
>AW597712 weakly similar to PIR|T06458|T064 nucleolin homolog - garden pea,
partial (8%)
Length = 411
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/59 (35%), Positives = 26/59 (43%), Gaps = 6/59 (10%)
Frame = -1
Query: 215 YVCEYESIFFFLRTKSFHLRLKSFRVFFERIF------FYAKKGHLVEVFVKDFFSTLT 267
Y C SI F F + L+SFRVFF F FY + HL+ FF +T
Sbjct: 279 YYCLRSSISFIWCR*HFRIFLRSFRVFFLNSFLTVL*TFYRQNLHLLLCSFTTFFRIIT 103
>TC223054
Length = 728
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = +1
Query: 415 YYNGSSKKKSLYRIKYILRLSCI 437
YY SSKK S RI YI+R+S I
Sbjct: 535 YYYASSKKMSCTRISYIMRVSSI 603
>TC228817 similar to UP|Q9SHQ7 (Q9SHQ7) F1K23.5, partial (75%)
Length = 1355
Score = 29.6 bits (65), Expect = 3.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 289 NLPILMNKWKYYFIHLWQCY 308
NL + KWK Y +HLW+C+
Sbjct: 569 NLF*IQLKWKQYLMHLWKCF 628
>TC218314
Length = 1137
Score = 29.6 bits (65), Expect = 3.3
Identities = 15/54 (27%), Positives = 27/54 (49%)
Frame = +2
Query: 263 FSTLTFFKDPFIHYVRYQGKSILASKNLPILMNKWKYYFIHLWQCYFDVWSQPR 316
F +F + F HY Y+ + ++ +L ++N WKY F+ + Y +S R
Sbjct: 125 FFIFSFERCMFFHYKHYKIR*LIFLYSLISMINWWKYVFVRCYWPYILQFSAER 286
>TC233763
Length = 821
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 168 VKDAPLFHLLRLFLYDYCNWNSIFIPQKSIYTFSKKNPRFFFF-LYNFYVCE--YESIFF 224
+K+ LF+L +FLY++C+ F +T+S FFF L+ YV S+F
Sbjct: 433 IKNTSLFYLTFIFLYNFCHLLFSF----KTFTYSLSFIAFFFI*LFYLYVLRKILSSLFL 266
Query: 225 F 225
F
Sbjct: 265 F 263
>CO982607
Length = 842
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 406 LRICRNLS--HYYNGSSKKKSLYRIKYILRLSCIKTLACKHKSTVRAFSKRLGSE 458
L IC +L HY+N K + I SC +TL C KST+ LG E
Sbjct: 206 LDICNSLRILHYFNYK*KICMSNTLPEISTSSCFQTLHCSSKSTLPQCHSPLGDE 370
>AW153129
Length = 132
Score = 29.6 bits (65), Expect = 3.3
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 7/29 (24%)
Frame = +3
Query: 207 FFFFLYNFYVCEYE-------SIFFFLRT 228
FFFFL NF VC Y+ IFFF+ T
Sbjct: 24 FFFFLLNFIVCIYKYLLWHVHGIFFFIYT 110
>TC209789 homologue to UP|Q75T80 (Q75T80) Starch synthase I precursor ,
partial (25%)
Length = 846
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -3
Query: 391 PSWADLSDFEIIARFLRICRNLSHYYNGSSKKKSLYRIKYILRLSCIKTLACK 443
PSW + E IA FL +LSH Y + K + +YI R SC+ L CK
Sbjct: 649 PSWETQATKEKIASFLL---SLSHDYEHDNLLK---QPEYIERKSCVDHLLCK 509
>TC226707 similar to UP|Q7XA50 (Q7XA50) Sorbitol-like transporter, partial
(62%)
Length = 2338
Score = 29.3 bits (64), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 378 SKFCNVLGNPLSKPSWADLSDFEIIA 403
++ C+ LGN L +PSW + DF + A
Sbjct: 1771 AELCDQLGNVLGRPSWLPVPDFALKA 1694
>TC219203 similar to UP|Q6JCR5 (Q6JCR5) Cytochrome b (Fragment), partial (9%)
Length = 623
Score = 29.3 bits (64), Expect = 4.4
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +2
Query: 207 FFFFLYNFYVCEYESIFFFLRTKSFHLRLKSFRVFFERIFFY 248
FF Y F++C S FF + FH SF FF +F++
Sbjct: 152 FFLSFYWFFLCFLLSFFFLCLLRLFHC---SFSSFFMCLFYF 268
>TC211146 similar to UP|Q9ZVN9 (Q9ZVN9) T7A14.8 protein (P44/SSL1-like
protein), partial (33%)
Length = 558
Score = 29.3 bits (64), Expect = 4.4
Identities = 13/46 (28%), Positives = 24/46 (51%)
Frame = -1
Query: 372 IRLLAKSKFCNVLGNPLSKPSWADLSDFEIIARFLRICRNLSHYYN 417
+RL +KFC + NP+ +++ + +I F C NL ++N
Sbjct: 510 VRLRTATKFCYAMSNPIFYSHQTNMTKWILIKEFPDKCLNLFPHHN 373
>CA802337
Length = 381
Score = 29.3 bits (64), Expect = 4.4
Identities = 19/58 (32%), Positives = 25/58 (42%)
Frame = -3
Query: 191 FIPQKSIYTFSKKNPRFFFFLYNFYVCEYESIFFFLRTKSFHLRLKSFRVFFERIFFY 248
F P K+ + F P FFFF + F+ + FFF F F FF FF+
Sbjct: 244 FPPXKNFF-FLNPPPFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 74
>AW101589 GP|21104742|db OJ1117_G01.13 {Oryza sativa (japonica
cultivar-group)}, partial (24%)
Length = 235
Score = 29.3 bits (64), Expect = 4.4
Identities = 17/52 (32%), Positives = 23/52 (43%)
Frame = -1
Query: 197 IYTFSKKNPRFFFFLYNFYVCEYESIFFFLRTKSFHLRLKSFRVFFERIFFY 248
I +F + P FFFF + F+ + FFF F F FF FF+
Sbjct: 190 IGSFKRAPPFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 35
>TC222677 similar to UP|FUT1_PEA (Q9M5Q1) Galactoside
2-alpha-L-fucosyltransferase (Xyloglucan
alpha-(1,2)-fucosyltransferase) (PsFT1) , partial (41%)
Length = 737
Score = 29.3 bits (64), Expect = 4.4
Identities = 20/77 (25%), Positives = 34/77 (43%)
Frame = +1
Query: 349 LQNGFLIKIIIKKLDIIVPIIPIIRLLAKSKFCNVLGNPLSKPSWADLSDFEIIARFLRI 408
L + FL ++ ++ ++ P ++ L FC P SW SDF + A+F
Sbjct: 91 LASAFLYALLTNRVLLVDPGADMVDL-----FCE----PFPDSSWLLPSDFPLNAQFNNF 243
Query: 409 CRNLSHYYNGSSKKKSL 425
+N H Y K K++
Sbjct: 244 SQNSDHCYGKMLKSKAV 294
>TC220138 similar to GB|AAP37839.1|30725634|BT008480 At5g64750 {Arabidopsis
thaliana;} , partial (6%)
Length = 913
Score = 29.3 bits (64), Expect = 4.4
Identities = 22/82 (26%), Positives = 33/82 (39%), Gaps = 12/82 (14%)
Frame = +3
Query: 189 SIFIPQKS--IYTFSKKNP----------RFFFFLYNFYVCEYESIFFFLRTKSFHLRLK 236
S+F P KS I+ FS NP F + C Y F + K+ H+
Sbjct: 3 SLFTPHKSNHIFQFSHLNPLTHHHY*STSSMFCLQFA*STCWYHQSFVKHKVKAGHIAEG 182
Query: 237 SFRVFFERIFFYAKKGHLVEVF 258
+ R+F +F HL ++F
Sbjct: 183 ANRIFQNLFYFLLSLLHLFQIF 248
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.330 0.145 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,961,436
Number of Sequences: 63676
Number of extensions: 442901
Number of successful extensions: 5856
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 3993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4604
length of query: 508
length of database: 12,639,632
effective HSP length: 101
effective length of query: 407
effective length of database: 6,208,356
effective search space: 2526800892
effective search space used: 2526800892
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Description of BAB33177.1