BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0520.5
(262 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 239 5e-62
UniRef100_O23410 STRONG homology to reverse transcriptase [Arabi... 213 3e-54
UniRef100_O80790 Putative non-LTR retroelement reverse transcrip... 199 8e-50
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 186 5e-46
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha... 182 6e-45
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 182 6e-45
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 181 1e-44
UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana] 181 1e-44
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 175 9e-43
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 175 9e-43
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 175 1e-42
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 174 3e-42
UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa] 173 5e-42
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri... 171 2e-41
UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sat... 168 1e-40
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 167 2e-40
UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcrip... 165 1e-39
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 162 8e-39
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi... 161 1e-38
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 160 4e-38
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 239 bits (610), Expect = 5e-62
Identities = 117/249 (46%), Positives = 166/249 (65%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI+L QE +H++ +K +G + +K+DLEKAYDRV WDFL+ TL G IM
Sbjct: 412 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMA 471
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
GV P +S+LWN + SF P RGLRQGDPLSPYLFVLC+ERL I+ V + WKP+
Sbjct: 472 GVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIA 531
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
++ G +SH+ FADD++LF +AS Q++++ L+ FCEASG KV+L+KS++ FS V
Sbjct: 532 VSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVS 591
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+ +S +GI +LGKYLG+P+L+ R+ K F ++ ++S+RL WK L+ AG
Sbjct: 592 REMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAG 651
Query: 243 RVCLAKSVL 251
R+ L K+VL
Sbjct: 652 RITLTKAVL 660
>UniRef100_O23410 STRONG homology to reverse transcriptase [Arabidopsis thaliana]
Length = 929
Score = 213 bits (543), Expect = 3e-54
Identities = 110/250 (44%), Positives = 159/250 (63%), Gaps = 17/250 (6%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI++ QE +H++ +K +G + +K+DLEKAYDR+ WDFL TL G + IM
Sbjct: 364 DNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIME 423
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
V P++S+LWN K SF P+RGLRQGDP+SPYLFVLC+ERL QI+ V +G WK +
Sbjct: 424 CVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSIS 483
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
I++ G +SH+ FADD++LF +AS Q KV+L+KS++ FS V
Sbjct: 484 ISQGGPKVSHVCFADDLILFAEASVAQ-----------------KVSLEKSKIFFSNNVS 526
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+ ++ GI +LGKYLG+P+L+ R+ K F ++ ++SSRL+ WK+ L+ AG
Sbjct: 527 RDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAG 586
Query: 243 RVCLAKSVLM 252
R+ L K+VLM
Sbjct: 587 RITLTKAVLM 596
>UniRef100_O80790 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 199 bits (505), Expect = 8e-50
Identities = 105/249 (42%), Positives = 150/249 (60%), Gaps = 18/249 (7%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI+L QE +H++ +K +G + +K+DLEKAYDR+ W+FL+ TL G IM
Sbjct: 262 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWNFLQETLVATGLSEVWTHRIMA 321
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
GV P +S+LWN K SF P RGLRQGDPLSPYLFVLC+ERL I+ V WKP+
Sbjct: 322 GVTDPSMSVLWNGGKTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGTWDWKPMA 381
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
++ C+AS Q+ ++ L++FCEASG V+L+KS+++FS V
Sbjct: 382 LS------------------CEASVAQILIIRRVLEQFCEASGQNVSLEKSKIVFSNNVS 423
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+ +S +GI +LGKYLG+P+L+ R+ K ++ +SS L WK+ L+ A
Sbjct: 424 RDMERLISGESGIGCTRELGKYLGMPILQKRMNKETSGEVLEHVSSSLAGWKSRSLSLAW 483
Query: 243 RVCLAKSVL 251
R+ L K+VL
Sbjct: 484 RITLTKAVL 492
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 186 bits (472), Expect = 5e-46
Identities = 95/249 (38%), Positives = 147/249 (58%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI++A E++H++HT+K + VA K+D+ KA+D++ W F+ A + GF + + IM
Sbjct: 4 DNILIAHELIHSLHTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMT 63
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
+ SIL N + P+RG+RQGDP+SPYL++LC E L+ IQ + +
Sbjct: 64 CITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFK 123
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
+++G ISHL FA D L+FC+A+ E+ + N LK + +ASG VN KS +LF K +D
Sbjct: 124 ASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLD 183
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
R LS + GI + G+YLG+P GR F+ + M ++ +W N LL+ AG
Sbjct: 184 FRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAG 243
Query: 243 RVCLAKSVL 251
+ L KS++
Sbjct: 244 KEVLIKSIV 252
>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
Length = 1294
Score = 182 bits (463), Expect = 6e-45
Identities = 100/251 (39%), Positives = 144/251 (56%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A E+MH++ T+K+ + +A+K D+ KAYDRV W+FL T+ FGF + IM
Sbjct: 910 DNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIM 969
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N + PQRG+RQGDPLSPYLF+LC + L I+N V +G + +
Sbjct: 970 GAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGI 1029
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI G++HL FADD L FCQ++ Q + + + SG K+N+ KS + F V
Sbjct: 1030 RIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRV 1089
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L +I GI GKYLG+P GR + F +I ++ R +SW L+ A
Sbjct: 1090 HGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPA 1149
Query: 242 GRVCLAKSVLM 252
G+ + KSV M
Sbjct: 1150 GKEIMLKSVAM 1160
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 182 bits (463), Expect = 6e-45
Identities = 100/251 (39%), Positives = 144/251 (56%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A E+MH++ T+K+ + +A+K D+ KAYDRV W+FL T+ FGF + IM
Sbjct: 930 DNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIM 989
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N + PQRG+RQGDPLSPYLF+LC + L I+N V +G + +
Sbjct: 990 GAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGI 1049
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI G++HL FADD L FCQ++ Q + + + SG K+N+ KS + F V
Sbjct: 1050 RIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRV 1109
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L +I GI GKYLG+P GR + F +I ++ R +SW L+ A
Sbjct: 1110 HGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPA 1169
Query: 242 GRVCLAKSVLM 252
G+ + KSV M
Sbjct: 1170 GKEIMLKSVAM 1180
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 181 bits (460), Expect = 1e-44
Identities = 96/251 (38%), Positives = 144/251 (57%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A E++H++ ++++ + G VA+K D+ KAYDRV W+FL + GF PR V IM
Sbjct: 910 DNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIM 969
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V +L N S P RG+RQGDPLSPYLF+ C E L+ ++ +
Sbjct: 970 TCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGM 1029
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
+ITKD + ISHL FADD L FC+AS + ++ + K++ EASG K+N KS ++F + +
Sbjct: 1030 KITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKI 1089
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
R+ L + GI GKYLG+P GR F ++ K+ R W N L+ A
Sbjct: 1090 PTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPA 1149
Query: 242 GRVCLAKSVLM 252
G+ + K++ M
Sbjct: 1150 GKEIVIKAIAM 1160
>UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 181 bits (460), Expect = 1e-44
Identities = 105/235 (44%), Positives = 138/235 (58%), Gaps = 15/235 (6%)
Query: 18 QKKG-RGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMWGVKCPKLSILWNCS 76
+KKG +G + +K+DLEKAYDR+ WDFL TL GF V IM V P +S+LWN
Sbjct: 3 RKKGSKGWMLLKLDLEKAYDRIRWDFLSDTLVAAGFSEVWVTWIMQCVSGPDMSLLWNGE 62
Query: 77 KLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVRITKDGVGISHLFFA 136
K F P RGLRQGD LSPYLFVLCMERL I+ + WKP+ +++ G +SH+ FA
Sbjct: 63 KTTPFKPLRGLRQGDLLSPYLFVLCMERLCHLIERSINAKQWKPINLSRGGPKLSHICFA 122
Query: 137 DDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVDHRRQINLSHIAGIS 196
DD++LF +AS EQ+Q+V L+ FC ASG KV+L+KS++ FSK V +S +GI
Sbjct: 123 DDLILFAEASVEQVQIVRRVLEAFCTASGQKVSLEKSKIFFSKNVSRELGKLISDESGIQ 182
Query: 197 RASDLGKYLGIPLLKG--------------RVTKAHFASLIGKMSSRLTSWKNNL 237
D GK L+K R K+ +LI K+ RL KN+L
Sbjct: 183 STCDWGKKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 237
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 175 bits (444), Expect = 9e-43
Identities = 99/251 (39%), Positives = 138/251 (54%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 930 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 989
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 990 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 1049
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 1050 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 1109
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 1110 YGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 1169
Query: 242 GRVCLAKSVLM 252
G+ + KSV +
Sbjct: 1170 GKEIMLKSVAL 1180
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 175 bits (444), Expect = 9e-43
Identities = 99/251 (39%), Positives = 138/251 (54%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A EVMH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 704 DNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIM 763
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N S P RG+RQGDPLSPYLF+LC + L+ I + G + V
Sbjct: 764 AAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGV 823
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 824 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRV 883
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L I I GKYLG+P GR K F +I ++ R ++W L+ A
Sbjct: 884 YGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPA 943
Query: 242 GRVCLAKSVLM 252
G+ + KSV +
Sbjct: 944 GKEIMLKSVAL 954
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 175 bits (443), Expect = 1e-42
Identities = 99/251 (39%), Positives = 139/251 (54%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++A E+MH++ +K+ + +A+K D+ KAYDRV WDFL T+ FGF + + IM
Sbjct: 169 DNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIM 228
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK S+L N S +P RG+RQGDPLSPYLF+LC + L+ I+ + G + V
Sbjct: 229 AAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGV 288
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI I+HL FADD L FCQA+ Q + + + SG K+N+ KS + F V
Sbjct: 289 RIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRV 348
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
Q L + I GKYLG+P GR K F +I ++ R SW L+ A
Sbjct: 349 YGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPA 408
Query: 242 GRVCLAKSVLM 252
G+ L KSV +
Sbjct: 409 GKEILLKSVAL 419
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 174 bits (440), Expect = 3e-42
Identities = 90/249 (36%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Query: 3 DNIILAQEVMHTIHTQKKGRG-LVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++AQE+ H + T + +AIK D+ KAYD+V W+F+ A L GF + + IM
Sbjct: 332 DNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIM 391
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
W + + +L N P+RGLRQGDPLSPYLF+LC E L I+ Q +
Sbjct: 392 WCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGI 451
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
++ +SHL FADD L FC+A+KEQ ++ LK++ SG ++N KS + F V
Sbjct: 452 KVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKV 511
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
+ + ++ I GI +G YLG+P G F+ + ++ SR+ W L++
Sbjct: 512 EDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKG 571
Query: 242 GRVCLAKSV 250
G+ + KSV
Sbjct: 572 GKEVMIKSV 580
>UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]
Length = 1936
Score = 173 bits (438), Expect = 5e-42
Identities = 95/250 (38%), Positives = 141/250 (56%), Gaps = 1/250 (0%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLV-AIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN +LA E H+I KK A K+DL KAYDRV W FL L GF R V IM
Sbjct: 1188 DNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWIM 1247
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V + S+ +N + L SFAP RGLRQG+PLSP+LF+ + L++ ++ V Q + P+
Sbjct: 1248 LCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTPL 1307
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
+I + GIS+L FADD LLF +A K++ ++V L + + +G +N K +LF +A
Sbjct: 1308 KICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEAS 1367
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
++ + + R + +YLG P +GR+ K F SL K++ R+ W N L+
Sbjct: 1368 PSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSSG 1427
Query: 242 GRVCLAKSVL 251
G+ L K+V+
Sbjct: 1428 GKEILIKAVI 1437
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 171 bits (432), Expect = 2e-41
Identities = 89/249 (35%), Positives = 142/249 (56%), Gaps = 35/249 (14%)
Query: 3 DNIILAQEVMHTIHTQKKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
DNI++ QE +H++ +K +G + +K+DLEKAYDR+ W+FL TL P + + IM
Sbjct: 109 DNIVIMQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRWEFLEDTLRAVRLPEKWIVWIMQ 168
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
V P +S+LWN ++ + + WKP+
Sbjct: 169 CVTEPSMSLLWN-----------------------------------EHSIARKDWKPIS 193
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
+++ G +SH+ FADD++LF +AS Q++++ L+ FC ASG KV+L+KS++ FS+ V
Sbjct: 194 LSQGGPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVS 253
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
+S +GIS +LGKYLG+P+L+ R+ K F ++ K+++RL WK L+ AG
Sbjct: 254 RDLGKLISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAG 313
Query: 243 RVCLAKSVL 251
RV L K+VL
Sbjct: 314 RVTLTKAVL 322
>UniRef100_Q6I5L7 Hypothetical protein OSJNBb0088F07.2 [Oryza sativa]
Length = 1264
Score = 168 bits (426), Expect = 1e-40
Identities = 93/248 (37%), Positives = 143/248 (57%), Gaps = 1/248 (0%)
Query: 4 NIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIMW 62
N++LA E+ H ++ +KKG+ G+ AIK+D+ KAYDRV WDFLR + GF + V+L+M
Sbjct: 897 NVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMMLRLGFHDQWVNLVMK 956
Query: 63 GVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPVR 122
V I N PQRGLRQGDPLSPYLF++C E L+ +Q G + ++
Sbjct: 957 CVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQKAQADGKIEGIK 1016
Query: 123 ITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAVD 182
+ +D I+HLFFADD L+ +A + Q + L + ASG +N DKS +LFS
Sbjct: 1017 VCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKDKSSVLFSPNTL 1076
Query: 183 HRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRAG 242
++ + I++ + +YLG+P+ G+ + F + K+ R+ W+ LL++AG
Sbjct: 1077 QSDRMEVRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWLRIQGWQEKLLSKAG 1136
Query: 243 RVCLAKSV 250
+ L K+V
Sbjct: 1137 KEILVKAV 1144
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 167 bits (424), Expect = 2e-40
Identities = 94/249 (37%), Positives = 137/249 (54%), Gaps = 1/249 (0%)
Query: 3 DNIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++A E+ H + ++ G+ G A K+D+ KAYDRV W FL + GF V+LIM
Sbjct: 749 DNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIM 808
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V I N SF+P+RGLRQGDPLSPYLF+LC E + + +G +
Sbjct: 809 KCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGI 868
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
RI + +SHL FADD L+ C+A+ + Q + L+ + E SG +N DKS ++FS
Sbjct: 869 RICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNT 928
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
+ + + R + KYLG+P+ GR F+ L ++ R+ WK LL+RA
Sbjct: 929 SSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRA 988
Query: 242 GRVCLAKSV 250
G+ L K+V
Sbjct: 989 GKEILIKAV 997
>UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 165 bits (418), Expect = 1e-39
Identities = 84/252 (33%), Positives = 139/252 (54%), Gaps = 1/252 (0%)
Query: 1 TRDNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDL 59
+ DN+++ E +H + + + R +A+K ++ KAYDR+ WDF++ + + GF +
Sbjct: 372 SNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISW 431
Query: 60 IMWGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWK 119
I+ + S L N S + P+RGLRQGDPLSP+LF++C E L+ + G+
Sbjct: 432 ILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLL 491
Query: 120 PVRITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSK 179
+R++K ++HL FADD + FC++ + + LK++ EASG +N KS + FS+
Sbjct: 492 GLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSR 551
Query: 180 AVDHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLN 239
+ I GI LGKYLG+P + GR + F ++ ++ R SW + L+
Sbjct: 552 KTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLS 611
Query: 240 RAGRVCLAKSVL 251
AG+ + KSVL
Sbjct: 612 TAGKTTMLKSVL 623
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 162 bits (410), Expect = 8e-39
Identities = 89/251 (35%), Positives = 134/251 (52%), Gaps = 1/251 (0%)
Query: 3 DNIILAQEVMHTIHTQKK-GRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DNI++A E++H + + K +AIK D+ KAYDRV W FL + GF + LIM
Sbjct: 548 DNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIM 607
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
VK + +L N + P RGLRQGDPLSPYLFV+C E L +Q+ + +
Sbjct: 608 ECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGL 667
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
++ + ISHL FADD + +C+ + E L + ++E+ ASG +VN KS + F K +
Sbjct: 668 KVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHI 727
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
R+ + GI R G YLG+P A + L ++ ++ W++N L+
Sbjct: 728 SEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPG 787
Query: 242 GRVCLAKSVLM 252
G+ L K+V M
Sbjct: 788 GKEILLKAVAM 798
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 161 bits (408), Expect = 1e-38
Identities = 93/252 (36%), Positives = 139/252 (54%), Gaps = 5/252 (1%)
Query: 3 DNIILAQEVMHTIHTQ-KKGRGLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN+++ E++H + K +AIK D+ KAYDR+ W+FL+ L GF + + +M
Sbjct: 489 DNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVM 548
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V S L N S S P RGLRQGDPLSPYLF+LC E L+ + +G +
Sbjct: 549 QCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGI 608
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
R+ + ++HL FADD + FC+ + ++N LK++ ASG +NL KS + FS
Sbjct: 609 RVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKT 668
Query: 182 --DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLN 239
D +R++ LS I +GKYLG+P GR + F+S++ ++ R SW L+
Sbjct: 669 PQDIKRRVKLS--LRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLS 726
Query: 240 RAGRVCLAKSVL 251
AG+ L K+VL
Sbjct: 727 SAGKQILLKAVL 738
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 160 bits (404), Expect = 4e-38
Identities = 92/250 (36%), Positives = 132/250 (52%), Gaps = 1/250 (0%)
Query: 3 DNIILAQEVMHTIHTQKKGR-GLVAIKIDLEKAYDRVSWDFLRATLYDFGFPPRIVDLIM 61
DN +LA E H + KK A K+DL KAYDRV W FL + GF R V+ IM
Sbjct: 1282 DNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIM 1341
Query: 62 WGVKCPKLSILWNCSKLPSFAPQRGLRQGDPLSPYLFVLCMERLAIQIQNLVTQGTWKPV 121
V + + +N + L SFAP RGLRQGDPL P+LF+ + L++ ++ V Q + P
Sbjct: 1342 KCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTPF 1401
Query: 122 RITKDGVGISHLFFADDVLLFCQASKEQLQLVNNTLKEFCEASGMKVNLDKSRMLFSKAV 181
++ + GISHL FADD LLF +A + + ++V L + +G +N K +L A
Sbjct: 1402 KVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGAS 1461
Query: 182 DHRRQINLSHIAGISRASDLGKYLGIPLLKGRVTKAHFASLIGKMSSRLTSWKNNLLNRA 241
+S I + R +YLG P +GR+ K F SL K+ R+ W N L+
Sbjct: 1462 TPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTG 1521
Query: 242 GRVCLAKSVL 251
G+ L K+V+
Sbjct: 1522 GKEVLIKAVI 1531
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.327 0.141 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,189,101
Number of Sequences: 2790947
Number of extensions: 16611843
Number of successful extensions: 45265
Number of sequences better than 10.0: 820
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 43917
Number of HSP's gapped (non-prelim): 891
length of query: 262
length of database: 848,049,833
effective HSP length: 125
effective length of query: 137
effective length of database: 499,181,458
effective search space: 68387859746
effective search space used: 68387859746
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0520.5