BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0490.9
(157 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa] 145 2e-34
UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa] 143 1e-33
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo... 134 7e-31
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense] 131 6e-30
UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Or... 124 6e-28
UniRef100_Q7XUF5 OJ991113_30.13 protein [Oryza sativa] 102 3e-21
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas] 94 8e-19
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa] 86 4e-16
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa] 84 9e-16
UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa] 84 9e-16
UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum] 83 3e-15
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa] 82 6e-15
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa] 81 7e-15
UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza... 81 1e-14
UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sa... 80 2e-14
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana] 74 9e-13
UniRef100_Q69FA7 Retrovirus-related pol polyprotein [Phaseolus v... 69 4e-11
UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana] 69 5e-11
UniRef100_Q5TRX5 ENSANGP00000021031 [Anopheles gambiae str. PEST] 68 6e-11
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop... 67 2e-10
>UniRef100_Q7XEC4 Putative polyprotein [Oryza sativa]
Length = 382
Score = 145 bits (367), Expect = 2e-34
Identities = 75/147 (51%), Positives = 105/147 (71%), Gaps = 2/147 (1%)
Query: 7 AKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAIVD-WNEMKKKAAGLIKL 65
+KFEV + +GT NF LWQMR+KDLLAQQG+ KAL++ + D WNEMK +AA I+L
Sbjct: 7 SKFEVVKFDGTGNFVLWQMRLKDLLAQQGISKALQETMPEKIDADKWNEMKAQAAATIRL 66
Query: 66 CVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAF 125
+SD VM +D + ++WD L S +MSK+L KL +KQ+ Y L++QE DL+ HV+ F
Sbjct: 67 SLSDSVMYQVMDEKSPKEIWDKLASLHMSKSLTSKLYLKQQLYGLQVQEESDLRKHVDVF 126
Query: 126 NNILADLTRLGVKVDDENKAII-FCAL 151
N ++ DL++L VK+DDE+KAII C+L
Sbjct: 127 NQLVVDLSKLDVKLDDEDKAIILLCSL 153
>UniRef100_Q7XLX8 OSJNBa0042I15.12 protein [Oryza sativa]
Length = 432
Score = 143 bits (361), Expect = 1e-33
Identities = 74/152 (48%), Positives = 104/152 (67%), Gaps = 2/152 (1%)
Query: 2 LNPGGAKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRD-KSLDIAIVDWNEMKKKAA 60
L P KF++ + +G NFGLWQ RVKDLLAQQ + KAL+ K + D EM+ +AA
Sbjct: 37 LAPTCMKFDLVKFDGFGNFGLWQTRVKDLLAQQEVSKALKGVKPAKMEDDDCEEMQLQAA 96
Query: 61 GLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQD 120
I+ C+SD +M H ++ T+ +W+ LE+Q+MSKTL +K +KQ+ Y LKMQEG DL
Sbjct: 97 ATIRRCLSDQIMYHVMEETSPKIIWEKLEAQFMSKTLTNKRYLKQKLYGLKMQEGADLTA 156
Query: 121 HVNAFNNILADLTRLGVKVDDENKAII-FCAL 151
HVN FN ++ DL ++ V+VDDE+KAI+ C+L
Sbjct: 157 HVNVFNQLVTDLVKMDVEVDDEDKAIVLLCSL 188
>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Contains: Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
Length = 1328
Score = 134 bits (337), Expect = 7e-31
Identities = 65/145 (44%), Positives = 94/145 (64%), Gaps = 3/145 (2%)
Query: 6 GAKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKAL---RDKSLDIAIVDWNEMKKKAAGL 62
G K+EV + NG F WQ R++DLL QQGLHK L K + DW ++ ++AA
Sbjct: 3 GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62
Query: 63 IKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHV 122
I+L +SDDV+N+ +D T +W LES YMSKTL +KL +K++ Y+L M EG + H+
Sbjct: 63 IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122
Query: 123 NAFNNILADLTRLGVKVDDENKAII 147
N FN ++ L LGVK+++E+KAI+
Sbjct: 123 NVFNGLITQLANLGVKIEEEDKAIL 147
>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
Length = 1328
Score = 131 bits (329), Expect = 6e-30
Identities = 65/146 (44%), Positives = 97/146 (65%), Gaps = 4/146 (2%)
Query: 6 GAKFEVTRLNGTRN-FGLWQMRVKDLLAQQGLHKALRDKSL---DIAIVDWNEMKKKAAG 61
G K+EV + NG + F +WQ R+KDLL QQGLHKAL KS + + DW E+ +KAA
Sbjct: 3 GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62
Query: 62 LIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDH 121
I+L ++DDV+N+ +D + +W LE+ YMSKTL +KL +K++ Y+L M EG + H
Sbjct: 63 AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122
Query: 122 VNAFNNILADLTRLGVKVDDENKAII 147
+N N ++ L LGVK+++E+K I+
Sbjct: 123 LNVLNGLITQLANLGVKIEEEDKRIV 148
>UniRef100_Q8H023 Putative retrovirus-related pol polyprotein [Oryza sativa]
Length = 556
Score = 124 bits (312), Expect = 6e-28
Identities = 68/138 (49%), Positives = 94/138 (67%), Gaps = 6/138 (4%)
Query: 18 RNFGLWQMRVKDLLAQQGLHKALRD---KSLDIAIVDWNEMKKKAAGLIKLCVSDDVMNH 74
R G QMR+KDLLAQQG+ KAL + + +D+ W EMK +A +I+L +SD VM
Sbjct: 149 RRDGSSQMRLKDLLAQQGISKALEETMPEKMDVG--KWVEMKAQATAIIRLSLSDFVMYQ 206
Query: 75 TLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAFNNILADLTR 134
+D T ++WD L S YMSK+L KL +KQ+ Y L+MQE DL+ HV+ FN ++ DL++
Sbjct: 207 VMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQLYGLQMQEESDLRKHVDVFNQLVVDLSK 266
Query: 135 LGVKVDDENKAII-FCAL 151
L VK+DDE+KAII C+L
Sbjct: 267 LDVKLDDEDKAIILLCSL 284
>UniRef100_Q7XUF5 OJ991113_30.13 protein [Oryza sativa]
Length = 353
Score = 102 bits (254), Expect = 3e-21
Identities = 51/101 (50%), Positives = 70/101 (68%), Gaps = 1/101 (0%)
Query: 52 WNEMKKKAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLK 111
W+EMK +AA I+L + D VM +D T ++WD L S YMSK+L KL +KQ+ Y L+
Sbjct: 6 WDEMKAQAAATIRLSLLDSVMYQVMDEKTPKEIWDKLASLYMSKSLTSKLYLKQQSYGLQ 65
Query: 112 MQEGGDLQDHVNAFNNILADLTRLGVKVDDENKAII-FCAL 151
MQE DL+ HV+ FN ++ DL +L VK+DDE+KAII C+L
Sbjct: 66 MQEESDLRKHVDIFNQLVVDLRKLDVKLDDEDKAIILLCSL 106
>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 94.4 bits (233), Expect = 8e-19
Identities = 44/140 (31%), Positives = 84/140 (59%), Gaps = 2/140 (1%)
Query: 7 AKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAI-VDWNEMKKKAAGLIKL 65
AKFE+ + NG +NF LW+++VK +L + A+ ++ +D W+EM + A + L
Sbjct: 3 AKFEIEKFNG-KNFSLWKLKVKAILRKDNCLAAISERPVDFTDDKKWSEMNEDAMADLYL 61
Query: 66 CVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAF 125
++D V++ + T N++WD L Y +K+L +K+ +K++ Y+L+M E + +H+N
Sbjct: 62 SIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTL 121
Query: 126 NNILADLTRLGVKVDDENKA 145
N + + LT L K++ + +A
Sbjct: 122 NTLFSQLTSLSCKIEPQERA 141
>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
Length = 1181
Score = 85.5 bits (210), Expect = 4e-16
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 8 KFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAIVDW-NEMKK---KAAGLI 63
K+++ L+ F LWQ++++ +LAQQ L AL D DW N+ KK KA I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQELDDAL--SGFDKRTQDWSNDEKKRDRKAMSYI 62
Query: 64 KLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVN 123
L +S++++ L T +W LE M+K L K+ +KQ+ + K+Q+ G + DH++
Sbjct: 63 HLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLS 122
Query: 124 AFNNILADLTRLGVKVDDENKA-IIFCAL 151
AF I+ADL + VK D+++ A I+ C+L
Sbjct: 123 AFKEIVADLESMEVKYDEKDLALILLCSL 151
>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
Length = 1280
Score = 84.3 bits (207), Expect = 9e-16
Identities = 52/149 (34%), Positives = 84/149 (55%), Gaps = 7/149 (4%)
Query: 8 KFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAIVDW-NEMKKK---AAGLI 63
K+++ L+ F LWQ++++ +LAQQ L AL D DW N+ KKK A I
Sbjct: 40 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAL--SGFDKRTQDWSNDEKKKDRKAMSYI 97
Query: 64 KLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVN 123
L +S++++ L T +W LE M+K L K+ +KQ+ + K+Q+ G + DH++
Sbjct: 98 HLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLS 157
Query: 124 AFNNILADLTRLGVKVDDENKA-IIFCAL 151
F I+ADL + VK D+E+ I+ C+L
Sbjct: 158 TFKEIVADLESIEVKYDEEDLGLILLCSL 186
>UniRef100_Q6L4X8 Putative polyprotein [Oryza sativa]
Length = 1211
Score = 84.3 bits (207), Expect = 9e-16
Identities = 52/149 (34%), Positives = 84/149 (55%), Gaps = 7/149 (4%)
Query: 8 KFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAIVDW-NEMKK---KAAGLI 63
K+++ L+ F LWQ++++ +LAQQ L AL D DW N+ KK K I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAL--SGFDKRTQDWSNDEKKRDRKTMSYI 62
Query: 64 KLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVN 123
L +S++++ L T +W LE M+K L K+ +KQ+ + K+Q+ G + DH++
Sbjct: 63 HLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLS 122
Query: 124 AFNNILADLTRLGVKVDDENKA-IIFCAL 151
AF I+ADL + VK D+E+ I+ C+L
Sbjct: 123 AFKKIVADLESMEVKYDEEDLCLILLCSL 151
>UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum]
Length = 1338
Score = 82.8 bits (203), Expect = 3e-15
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Query: 10 EVTRLNGTRNFGLWQMRVKDLLAQQGLHKAL--RDKSLDIAIVDWNEMKKKAAGLIKLCV 67
++ LNGT N+ LW+ ++KDLL +H + K D + DW + G I+ V
Sbjct: 7 KMVNLNGT-NYHLWRNKMKDLLFVTKMHLPVFSSQKPEDKSDEDWEFEHNQVCGYIRQFV 65
Query: 68 SDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAFNN 127
D+V NH +T +WD LE Y SKT +KL + +K EG + DH+N
Sbjct: 66 EDNVYNHISGVTHARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQG 125
Query: 128 ILADLTRLGVKVDDENKAIIFCA 150
I+ L+ +G+K DDE A++ A
Sbjct: 126 IVDQLSGMGIKFDDEVLALMVLA 148
>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
Length = 1243
Score = 81.6 bits (200), Expect = 6e-15
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 8 KFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAIVDW-NEMKK---KAAGLI 63
K+++ L+ F LWQ++++ +LAQQ L AL D DW N+ KK KA I
Sbjct: 5 KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDAL--SGFDKRTQDWSNDEKKRDRKAISYI 62
Query: 64 KLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVN 123
L +S++++ L T +W LE M+K L K+ +KQ+ + K+Q+ + DH++
Sbjct: 63 HLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHLS 122
Query: 124 AFNNILADLTRLGVKVDDENKA-IIFCAL 151
AF I+ADL + VK D+++ I+ C+L
Sbjct: 123 AFKEIVADLESMEVKYDEDDLGLILLCSL 151
>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
Length = 1322
Score = 81.3 bits (199), Expect = 7e-15
Identities = 49/150 (32%), Positives = 84/150 (55%), Gaps = 7/150 (4%)
Query: 8 KFEVTRLNGTRNFGLWQMRVKDLLAQQG-LHKALRDKSLDIAIVDWNEMKK----KAAGL 62
K+++ L+ F LWQ++++ +LAQ L +AL +W +K KA L
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKK-KTTEWTAEEKRKDRKALSL 63
Query: 63 IKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHV 122
I+L +S+D++ L T ++W LES MSK L K+ +K + +S K+ E G + +H+
Sbjct: 64 IQLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHI 123
Query: 123 NAFNNILADLTRLGVKVDDENKA-IIFCAL 151
+ F I+ADL + V+ DDE+ ++ C+L
Sbjct: 124 SVFKEIVADLVSMEVQFDDEDLGLLLLCSL 153
>UniRef100_Q8W5D4 Putative retrotransposon-related protein [Oryza sativa]
Length = 1229
Score = 80.9 bits (198), Expect = 1e-14
Identities = 49/150 (32%), Positives = 84/150 (55%), Gaps = 7/150 (4%)
Query: 8 KFEVTRLNGTRNFGLWQMRVKDLLAQQG-LHKALRDKSLDIAIVDWNEMKK----KAAGL 62
K+++ + F LWQ++++ +LAQ L +AL +W +K KA L
Sbjct: 2 KYDLPLQDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKK-KTTEWTAEEKRKDRKALSL 60
Query: 63 IKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHV 122
I+L +S+D++ L T ++W LES MSK L K+ +K + +S K+QE G + +H+
Sbjct: 61 IQLHLSNDILQKVLQEKTAAELWFKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHI 120
Query: 123 NAFNNILADLTRLGVKVDDENKA-IIFCAL 151
+ F I+ADL + V+ DDE+ ++ C+L
Sbjct: 121 SVFKEIIADLVSMEVQFDDEDLGLLLLCSL 150
>UniRef100_Q94LG0 Putative retroelement pol polyprotein [Oryza sativa]
Length = 1326
Score = 80.1 bits (196), Expect = 2e-14
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 8 KFEVTRLNGTRNFGLWQMRVKDLLAQQG-LHKALRDKSLDIAIVDWNEMKK----KAAGL 62
K+++ L+ F LWQ++++ +LAQ L +AL + +W +K KA L
Sbjct: 5 KYDLPLLDYKTRFSLWQVKMRAILAQTSDLDEALESFGKKKS-TEWTAEEKRKDRKALLL 63
Query: 63 IKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHV 122
I+L +S+D++ L T ++W LES MSK L K+ +K + +S K+QE G + +H+
Sbjct: 64 IQLHLSNDILQEVLQEKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLQESGSVLNHI 123
Query: 123 NAFNNILADLTRLGVKVDDENKA-IIFCAL 151
+ F I+ DL + V+ DDE+ ++ C+L
Sbjct: 124 SVFKEIVVDLVSIEVQFDDEDLGLLLLCSL 153
>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 74.3 bits (181), Expect = 9e-13
Identities = 46/160 (28%), Positives = 81/160 (49%), Gaps = 18/160 (11%)
Query: 6 GAKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIA----------------- 48
GA+ EV + +G ++ +W+ ++ + GL LR+ +
Sbjct: 3 GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62
Query: 49 -IVDWNEMKKKAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRR 107
+ + E K+KA I L VSD V+ T+ + + L+ YMSK L +++ +KQ+
Sbjct: 63 KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122
Query: 108 YSLKMQEGGDLQDHVNAFNNILADLTRLGVKVDDENKAII 147
YS KM E ++ +++ F +I+ADL L V V DE++AI+
Sbjct: 123 YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAIL 162
>UniRef100_Q69FA7 Retrovirus-related pol polyprotein [Phaseolus vulgaris]
Length = 324
Score = 68.9 bits (167), Expect = 4e-11
Identities = 37/116 (31%), Positives = 64/116 (54%), Gaps = 10/116 (8%)
Query: 42 DKSLDIAIV----------DWNEMKKKAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQ 91
DK LDIAI DW+ + + A G I+ C+S + + T+ + +W LE +
Sbjct: 12 DKGLDIAIEGEKPKEVEEKDWSIINRLACGTIRSCLSREQKYVVKNETSAHKLWKALEDK 71
Query: 92 YMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAFNNILADLTRLGVKVDDENKAII 147
++ K+ +KLL+K+R + Q+G + H+ FN ++A L L VK +DE+ A++
Sbjct: 72 FLKKSGQNKLLMKKRLFRFDYQQGTTMNAHITMFNQLVAYLLNLDVKFEDEDLALM 127
>UniRef100_Q9SZY0 Putative retrotransposon [Arabidopsis thaliana]
Length = 1230
Score = 68.6 bits (166), Expect = 5e-11
Identities = 46/159 (28%), Positives = 82/159 (50%), Gaps = 20/159 (12%)
Query: 7 AKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRD------------------KSLDIA 48
A+ E+ + +G ++ LW+ ++ + GL ALR+ K A
Sbjct: 4 ARVEMEKFDGHGDYTLWKEKLMAHMDLLGLTVALRETQSVSDPLESEEEGKESEKGDKEA 63
Query: 49 IVDWNEMKKKAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRY 108
+++ E ++KA I L VSD V+ + T + + L+ YMSK L +++ +KQ+ Y
Sbjct: 64 LME--EKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNRIYLKQKLY 121
Query: 109 SLKMQEGGDLQDHVNAFNNILADLTRLGVKVDDENKAII 147
S KMQE ++ +++ F ++ADL V V DE++AI+
Sbjct: 122 SYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAIL 160
>UniRef100_Q5TRX5 ENSANGP00000021031 [Anopheles gambiae str. PEST]
Length = 370
Score = 68.2 bits (165), Expect = 6e-11
Identities = 44/142 (30%), Positives = 77/142 (53%), Gaps = 7/142 (4%)
Query: 14 LNGTRNFGLWQMRVKDLLAQQGLHKALRDKSLDIAIVDWNEMKKKAAGLIKLCVSDDVMN 73
LNGT NF W+ R+ LL ++GL + ++ + D + N+ K K L+ ++D +
Sbjct: 12 LNGT-NFASWKYRMLILLEEKGLSECIQKERKDGDDLSKNDKKCKL--LLISRIADSQLE 68
Query: 74 HTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRYSLKMQEGGDLQDHVNAFNNILADLT 133
+ D T ++WDTL S Y K+L ++ +K++ +LK Q G L++H F+ ++ D
Sbjct: 69 YVRDKHTPKEIWDTLHSIYERKSLASRMFLKKKLLALKHQ-SGSLREHFLEFDKLVRDYK 127
Query: 134 RLGVKVDDENKAIIFCALYRAL 155
G ++DDE+ + C L L
Sbjct: 128 ATGGQMDDED---VICHLLLTL 146
>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 66.6 bits (161), Expect = 2e-10
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 7 AKFEVTRLNGTRNFGLWQMRVKDLLAQQGLHKALRDKS--------LDIAIVDWNEM--- 55
A+ EV + +G ++ +W+ ++ + GL+ AL++ LD + D+ E
Sbjct: 4 ARIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEK 63
Query: 56 -------KKKAAGLIKLCVSDDVMNHTLDLTTLNDVWDTLESQYMSKTLMDKLLVKQRRY 108
KKKA I L V+D V+ +T + L+ YMSK L +++ KQ+ Y
Sbjct: 64 FEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLY 123
Query: 109 SLKMQEGGDLQDHVNAFNNILADLTRLGVKVDDENKAII 147
S KM E ++ +++ F I+ DL + V + DE++AI+
Sbjct: 124 SFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAIL 162
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,454,610
Number of Sequences: 2790947
Number of extensions: 9096266
Number of successful extensions: 24803
Number of sequences better than 10.0: 201
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 24646
Number of HSP's gapped (non-prelim): 223
length of query: 157
length of database: 848,049,833
effective HSP length: 116
effective length of query: 41
effective length of database: 524,299,981
effective search space: 21496299221
effective search space used: 21496299221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0490.9