BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476a.7
         (109 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q8GWH5 Hypothetical protein At1g78895/F9K20.31 [Arabid...    57  8e-08
UniRef100_Q6Z916 Pentatricopeptide (PPR) repeat-containing prote...    56  2e-07

>UniRef100_Q8GWH5 Hypothetical protein At1g78895/F9K20.31 [Arabidopsis thaliana]
          Length = 164

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 31/44 (70%), Positives = 33/44 (74%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY 56
           I QDT   IVA LANTV +AE VLRVAATGHDKRL+ KV   LY
Sbjct: 66  ISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVKVVICLY 109


>UniRef100_Q6Z916 Pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa]
          Length = 135

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 2/50 (4%)

Query: 13  IYQDTVKAIVACLANTVDSAESVLRVAATGHDKRLYFKVSPSLY*ILTHF 62
           I Q+   +IVA LANT+ +AESVLRVAATGHDK+L+FK  P L+ ++  F
Sbjct: 84  ISQEMANSIVASLANTIGAAESVLRVAATGHDKKLFFK--PELFDMIAIF 131


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.366    0.161    0.597 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,151,768
Number of Sequences: 2790947
Number of extensions: 3704110
Number of successful extensions: 27627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27625
Number of HSP's gapped (non-prelim): 2
length of query: 109
length of database: 848,049,833
effective HSP length: 85
effective length of query: 24
effective length of database: 610,819,338
effective search space: 14659664112
effective search space used: 14659664112
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 68 (30.8 bits)