BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0343.1
(338 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8S1E5 Putative gag/pol polyprotein [Oryza sativa] 456 e-127
UniRef100_Q6ATH4 Putative polyprotein [Oryza sativa] 454 e-126
UniRef100_Q8W5M3 Putative gag-pol polyprotein [Oryza sativa] 444 e-123
UniRef100_Q688L2 Putative polyprotein [Oryza sativa] 443 e-123
UniRef100_Q8S805 Putative copia-type polyprotein [Oryza sativa] 441 e-122
UniRef100_Q7X7W7 OSJNBa0061G20.2 protein [Oryza sativa] 437 e-121
UniRef100_Q7X7N0 OSJNBa0035I04.5 protein [Oryza sativa] 436 e-121
UniRef100_Q7XCM1 Putative gag-pol polyprotein [Oryza sativa] 404 e-111
UniRef100_Q9FRJ2 Putative copia-like retrotransposon polyprotein... 394 e-108
UniRef100_Q8SAU7 Putative polyprotein [Oryza sativa] 341 2e-92
UniRef100_Q9T0C5 Retrotransposon like protein [Arabidopsis thali... 330 4e-89
UniRef100_O82493 T12H20.12 protein [Arabidopsis thaliana] 330 4e-89
UniRef100_Q9SA17 F28K20.17 protein [Arabidopsis thaliana] 327 4e-88
UniRef100_O24438 Retrofit [Oryza longistaminata] 326 6e-88
UniRef100_Q8W0X9 Putative copia-like retrotransposon Hopscotch p... 325 1e-87
UniRef100_Q9SXF0 T3P18.3 [Arabidopsis thaliana] 323 3e-87
UniRef100_Q94IU9 Copia-like polyprotein [Arabidopsis thaliana] 323 3e-87
UniRef100_Q75LJ1 Putative copia-like retrotransposon protein [Or... 323 5e-87
UniRef100_Q7XE22 Putative gag-pol polyprotein [Oryza sativa] 320 3e-86
UniRef100_Q94KV0 Polyprotein [Arabidopsis thaliana] 320 3e-86
>UniRef100_Q8S1E5 Putative gag/pol polyprotein [Oryza sativa]
Length = 1090
Score = 456 bits (1174), Expect = e-127
Identities = 220/338 (65%), Positives = 268/338 (79%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+++ G IAY+LLYVDDIIL AS+ L + A L SEFAM DLG L +FLGI+V
Sbjct: 739 DTSLFVYKDGDRIAYLLLYVDDIILTASTTTLLQQLTARLHSEFAMTDLGDLHFFLGISV 798
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R GLFLSQ YA +++ RAGMA C+ ++TPVDT KLS++ G P D + YRS+AGA
Sbjct: 799 KRSPDGLFLSQRQYAVDLLQRAGMAECHSTSTPVDTHAKLSATDGLPVADPSAYRSIAGA 858
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPD++YAVQQVCL MH P H+ +KR+LRYV+G+L+ GLH+ PI L +
Sbjct: 859 LQYLTLTRPDLAYAVQQVCLFMHDPREPHLALVKRILRYVKGSLSIGLHIGSGPIQSLTA 918
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW GCP++RRSTSGYCV+LGDNL+SWSSKRQ T+SRSSAEAEYR VA+ V+E CW+
Sbjct: 919 YSDADWAGCPNSRRSTSGYCVYLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAVAECCWL 978
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH P++ AT+V+CDNVSA+Y++ NPVHH+RTKHIE+DIHFVREKVA GQ RVL+
Sbjct: 979 RQLLQELHVPIASATIVYCDNVSAVYMTANPVHHRRTKHIEIDIHFVREKVALGQVRVLY 1038
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
VPS HQ ADI TKGLP LF DFRSSL V PPA+TAG
Sbjct: 1039 VPSSHQFADIMTKGLPVQLFTDFRSSLCVRAPPAATAG 1076
>UniRef100_Q6ATH4 Putative polyprotein [Oryza sativa]
Length = 1480
Score = 454 bits (1168), Expect = e-126
Identities = 218/336 (64%), Positives = 265/336 (77%)
Query: 3 SLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTR 62
SLF+++ G +IAY+LLYVDDIIL ASS L A L SEFAM DLG L +FLGI+VTR
Sbjct: 1143 SLFVYKDGDNIAYLLLYVDDIILTASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTR 1202
Query: 63 HAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQ 122
+ GLFLSQ Y +++ RAGM+ C+ +ATPVD + KLS++ G P D T YRSL GALQ
Sbjct: 1203 SSDGLFLSQRQYVVDLLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQ 1262
Query: 123 YLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYT 182
YLT TRP+++YAVQQVCL MH P H+ +KR+LRY++GTL GLHL +P+ L +Y+
Sbjct: 1263 YLTLTRPELAYAVQQVCLFMHDPREPHLALIKRILRYIKGTLHIGLHLGTTPVDSLTAYS 1322
Query: 183 DADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRN 242
DADW GCPD+ RSTSGYCVFLGDNL+SWSSKRQ T+SRSSAEAEYR VA+ ++E CW+R
Sbjct: 1323 DADWAGCPDSHRSTSGYCVFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQ 1382
Query: 243 LLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVP 302
LL ELH L+ AT+V+CDNVSA+Y++ NPVHH+RTKHIE+DIHFVREKVA GQ RVLH+P
Sbjct: 1383 LLSELHISLTSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHLP 1442
Query: 303 SRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
S HQ ADI TKGLP LF +FRSSL V + PASTAG
Sbjct: 1443 SSHQFADIMTKGLPVQLFTEFRSSLCVRDNPASTAG 1478
>UniRef100_Q8W5M3 Putative gag-pol polyprotein [Oryza sativa]
Length = 725
Score = 444 bits (1141), Expect = e-123
Identities = 213/338 (63%), Positives = 264/338 (78%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 346 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 405
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA+ ++ RAGMA+C ATP D K KLSS G +D++ YRS+ GA
Sbjct: 406 QRTADGFVLSQSKYATNVLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSITGA 465
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 466 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 525
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 526 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 585
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+R KHIE+DIHFVREKVA G+ RVL
Sbjct: 586 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRIKHIELDIHFVREKVALGELRVLP 645
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
+ S HQ AD+FTKGLP +F++FR+SL VG+ A+TAG
Sbjct: 646 ISSAHQFADVFTKGLPSSMFNEFRASLCVGDTTAATAG 683
>UniRef100_Q688L2 Putative polyprotein [Oryza sativa]
Length = 1679
Score = 443 bits (1139), Expect = e-123
Identities = 219/329 (66%), Positives = 254/329 (76%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI RG D Y+LLYVDDI+L ASS L ++ L EF+MKDLG L +FLG++V
Sbjct: 1350 DTSLFILHRGNDTVYLLLYVDDIVLTASSRTLLHWTISALQGEFSMKDLGALHHFLGVSV 1409
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
TR++ GL LSQ Y +I+ RAGMA C P TPVDT KLSSS G P D T +RSLAGA
Sbjct: 1410 TRNSAGLVLSQRQYCIDILERAGMADCKPCNTPVDTTAKLSSSDGPPVADPTDFRSLAGA 1469
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLTFTRPDISYAVQQVCLHMH P H+ ALKR+L Y+RG++ GLH+ S L
Sbjct: 1470 LQYLTFTRPDISYAVQQVCLHMHDPREPHLAALKRILHYIRGSVDLGLHIQRSSACDLAV 1529
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW GCPDTRRSTSGY VFLGDNL+SWSSKRQ T+SRSSAEAEYR VAN V+E W+
Sbjct: 1530 YSDADWAGCPDTRRSTSGYAVFLGDNLVSWSSKRQHTVSRSSAEAEYRAVANAVAEVTWL 1589
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH P S+ATLV+CDNVSA+YLS NPV HQRTKH+E+D+HFVRE+VA G RVLH
Sbjct: 1590 RQLLQELHSPPSRATLVYCDNVSAVYLSSNPVQHQRTKHVEIDLHFVRERVAVGAVRVLH 1649
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
VP+ Q ADIFTKGLP +F +FRSSL+V
Sbjct: 1650 VPTTSQYADIFTKGLPTPVFTEFRSSLNV 1678
>UniRef100_Q8S805 Putative copia-type polyprotein [Oryza sativa]
Length = 1803
Score = 441 bits (1135), Expect = e-122
Identities = 211/329 (64%), Positives = 261/329 (79%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 1070 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 1129
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA++++ RAGMA+C ATP D K KLSS G +D++ YRS+AGA
Sbjct: 1130 QRTADGFVLSQSKYATDVLERAGMANCKAVATPADAKPKLSSDEGPLFQDSSWYRSIAGA 1189
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 1190 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 1249
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 1250 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 1309
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+RTKHIE+DIHFVREKVA G+ RVL
Sbjct: 1310 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLP 1369
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
+PS HQ AD+FTKGLP +F++FR+SL V
Sbjct: 1370 IPSAHQFADVFTKGLPSSMFNEFRASLCV 1398
>UniRef100_Q7X7W7 OSJNBa0061G20.2 protein [Oryza sativa]
Length = 542
Score = 437 bits (1125), Expect = e-121
Identities = 212/338 (62%), Positives = 257/338 (75%), Gaps = 1/338 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D+SLF+ RRGTD A++LLYVDDI+L ASS L + + L EFAMKDLGP+ +FLGI V
Sbjct: 201 DNSLFVLRRGTDEAHLLLYVDDIVLAASSQRLLQHIINQLRVEFAMKDLGPVHFFLGIQV 260
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G FLSQ YA +++ RAG+A C P+ TP+DTK K+SS++G P D T YRS+ GA
Sbjct: 261 RRTADGFFLSQEQYAGDVLDRAGLADCKPAPTPIDTKAKVSSTTGQPYSDPTFYRSIVGA 320
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPD+SYAVQQVCLHMH+P H +KR+LRYVRGT GL L S L +
Sbjct: 321 LQYLTLTRPDLSYAVQQVCLHMHSPRDVHWTLVKRILRYVRGTTHKGLQLRRSSTPSLTA 380
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D DW GCPDTRRSTSG+CVF GD+ SWSSKRQ +SRSSAEAEYRGVAN +E CW+
Sbjct: 381 YSDVDWAGCPDTRRSTSGFCVFFGDSSESWSSKRQSVVSRSSAEAEYRGVANAAAECCWL 440
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R+LL ELH L +ATLV+CDN+SA+YLS NP+HH R KH+E+D+HFVREKVA G RV H
Sbjct: 441 RHLLGELHVKLDKATLVYCDNISAVYLSKNPLHHGRAKHVELDVHFVREKVAVGDIRVAH 500
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
+P+R Q+ADI TK LP LF+DFRSSL + + A TAG
Sbjct: 501 IPTRQQLADIMTKRLPTALFEDFRSSLCIVD-DAPTAG 537
>UniRef100_Q7X7N0 OSJNBa0035I04.5 protein [Oryza sativa]
Length = 1246
Score = 436 bits (1120), Expect = e-121
Identities = 214/337 (63%), Positives = 258/337 (76%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI R G +AY+LLYVDDIIL+ASS L A L +EFAM DLG L +FLGI+V
Sbjct: 907 DTSLFILRDGDRLAYLLLYVDDIILMASSAELLCHITARLHTEFAMTDLGDLHFFLGISV 966
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R LFLSQ YA +++ RAGM+ +P+ATPVD + KLS+S G P D T YRSLA A
Sbjct: 967 RRTPDDLFLSQRQYAVDLLQRAGMSEYHPTATPVDARAKLSASEGAPVADPTEYRSLADA 1026
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRP+I+YAVQQVC MH PH H+ +KR++RY++G+L+ GLH+ P+ L +
Sbjct: 1027 LQYLTLTRPEIAYAVQQVCRFMHDPHEPHLALVKRIMRYIKGSLSAGLHIGTGPVGSLTA 1086
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+DADW GCPD+RRSTSGYC+FLGDNL+SWSSKRQ T+SRSSAEAEYR VA+ ++E C +
Sbjct: 1087 YSDADWAGCPDSRRSTSGYCIFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCCL 1146
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH P+S T+V CDNVSA Y++ NPVHH+ TKHIE+DIHFVREKVA GQ RVLH
Sbjct: 1147 RQLLQELHAPISTTTVVFCDNVSAAYMTANPVHHRCTKHIEIDIHFVREKVALGQVRVLH 1206
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTA 337
VPS HQ D TKGLP LF DFRSSL V +PPA+TA
Sbjct: 1207 VPSTHQFPDFMTKGLPVQLFTDFRSSLCVRDPPAATA 1243
>UniRef100_Q7XCM1 Putative gag-pol polyprotein [Oryza sativa]
Length = 1417
Score = 404 bits (1038), Expect = e-111
Identities = 200/338 (59%), Positives = 248/338 (73%), Gaps = 32/338 (9%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 1070 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 1129
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA++ D++ YRS+AGA
Sbjct: 1130 QRTADGFVLSQSKYATD--------------------------------DSSWYRSIAGA 1157
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 1158 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 1217
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 1218 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 1277
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+RTKHIE+DIHFVREKVA G+ RVL
Sbjct: 1278 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLP 1337
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
+PS HQ AD+FTKGLP +F++FR+SL VG+ A+TAG
Sbjct: 1338 IPSAHQFADVFTKGLPSSMFNEFRASLCVGDTTAATAG 1375
>UniRef100_Q9FRJ2 Putative copia-like retrotransposon polyprotein [Oryza sativa]
Length = 1302
Score = 394 bits (1012), Expect = e-108
Identities = 195/329 (59%), Positives = 241/329 (72%), Gaps = 32/329 (9%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ RRG+D AY+LLYVDD+IL ASS +L + + L +EF +KD+GPL YFLGI V
Sbjct: 972 DPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFLGIEV 1031
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
R A G LSQS YA++ D++ YRS+AGA
Sbjct: 1032 QRTADGFVLSQSKYATD--------------------------------DSSWYRSIAGA 1059
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI+YAVQQVCLHMHAP H+ LKR+LRY++GT +GLHL S L +
Sbjct: 1060 LQYLTLTRPDIAYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTA 1119
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
++DADW GCPDTRRSTSG+C+FLGD+LISWSSKRQ T+SRSSAEAEYRGVAN V+E W+
Sbjct: 1120 FSDADWAGCPDTRRSTSGFCIFLGDSLISWSSKRQTTVSRSSAEAEYRGVANAVAECTWL 1179
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
R LL ELH + QAT+ +CDN+S++Y+S NPVHH+RTKHIE+DIHFVREKVA G+ RVL
Sbjct: 1180 RQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIELDIHFVREKVALGELRVLP 1239
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
+PS HQ AD+FTKGLP +F++FR+SL V
Sbjct: 1240 IPSAHQFADVFTKGLPSSMFNEFRASLCV 1268
>UniRef100_Q8SAU7 Putative polyprotein [Oryza sativa]
Length = 1264
Score = 341 bits (874), Expect = 2e-92
Identities = 188/338 (55%), Positives = 225/338 (65%), Gaps = 41/338 (12%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLFI+ G+ + Y+LLYVDDI+L ASS L + + L SEF+MKDLG L +FLGI V
Sbjct: 956 DTSLFIYHHGSHLVYLLLYVDDIVLTASSAGLLRWAIQALQSEFSMKDLGSLHHFLGITV 1015
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
T + GL LSQ Y+ E++ RAGM+ C P +TPVDT KLSSS G+P D T SLAGA
Sbjct: 1016 TGDSSGLLLSQHQYSIEVLERAGMSDCKPCSTPVDTNAKLSSSDGSPVVDPTDCHSLAGA 1075
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
L YLTFTRPDISYAVQQVCLHMH P G+ + P +S
Sbjct: 1076 LHYLTFTRPDISYAVQQVCLHMHDP---------------------GIPIVP------LS 1108
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
+DW GCPDTR+ST WS KRQ T+SRSS EAEYR VAN V+E+CW+
Sbjct: 1109 SGYSDWAGCPDTRKST-------------WSFKRQNTVSRSSDEAEYRVVANTVAETCWL 1155
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL EL P S+ATLV+CDNVSAIYLS NPV HQRTKH+E+D+HFV ++VA G RVLH
Sbjct: 1156 CQLLHEL-TPPSRATLVYCDNVSAIYLSTNPVQHQRTKHVEIDLHFVHDRVAAGSVRVLH 1214
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTAG 338
VP+ Q ADIFTKGLP +F +FRSSL+V +TAG
Sbjct: 1215 VPTTSQYADIFTKGLPTSIFVEFRSSLNVRCTNVATAG 1252
>UniRef100_Q9T0C5 Retrotransposon like protein [Arabidopsis thaliana]
Length = 1515
Score = 330 bits (845), Expect = 4e-89
Identities = 162/333 (48%), Positives = 219/333 (65%), Gaps = 2/333 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF++ +G D+ ++LLYVDD+IL ++ L + + +L++EF MKD+G L YFLGI
Sbjct: 1095 DPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQA 1154
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
H GLFLSQ Y S+++ AGM+ C+ TP+ L + P + T +R LAG
Sbjct: 1155 HYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLD--LLQGNNKPFPEPTYFRRLAGK 1212
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MHAP LKR+L Y++GT+T G++L + + L
Sbjct: 1213 LQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRC 1272
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DW GC DTRRST G+C FLG N+ISWS+KR PT+S+SS EAEYR ++ SE WI
Sbjct: 1273 YSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWI 1332
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL E+ P Q ++CDN+SA+YLS NP H R+KH ++D ++VRE+VA G V H
Sbjct: 1333 GFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKH 1392
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
+P+ Q+ADIFTK LP+ F D R L V PP
Sbjct: 1393 IPASQQLADIFTKSLPQAPFCDLRFKLGVVLPP 1425
>UniRef100_O82493 T12H20.12 protein [Arabidopsis thaliana]
Length = 1392
Score = 330 bits (845), Expect = 4e-89
Identities = 162/333 (48%), Positives = 219/333 (65%), Gaps = 2/333 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF++ +G D+ ++LLYVDD+IL ++ L + + +L++EF MKD+G L YFLGI
Sbjct: 972 DPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFLGIQA 1031
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
H GLFLSQ Y S+++ AGM+ C+ TP+ L + P + T +R LAG
Sbjct: 1032 HYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQLD--LLQGNNKPFPEPTYFRRLAGK 1089
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV VC MHAP LKR+L Y++GT+T G++L + + L
Sbjct: 1090 LQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDSVLRC 1149
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DW GC DTRRST G+C FLG N+ISWS+KR PT+S+SS EAEYR ++ SE WI
Sbjct: 1150 YSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASEVSWI 1209
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL E+ P Q ++CDN+SA+YLS NP H R+KH ++D ++VRE+VA G V H
Sbjct: 1210 GFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGALTVKH 1269
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPP 333
+P+ Q+ADIFTK LP+ F D R L V PP
Sbjct: 1270 IPASQQLADIFTKSLPQAPFCDLRFKLGVVLPP 1302
>UniRef100_Q9SA17 F28K20.17 protein [Arabidopsis thaliana]
Length = 1415
Score = 327 bits (837), Expect = 4e-88
Identities = 165/339 (48%), Positives = 220/339 (64%), Gaps = 3/339 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ + I Y+LLYVDDI+L S +L + + L + F+MKDLGP YFLGI +
Sbjct: 1035 DPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQI 1094
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+A GLFL Q+ YA++I+ +AGM+ CNP TP+ Q+L + + + T +RSLAG
Sbjct: 1095 EDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLP--QQLDNLNSELFAEPTYFRSLAGK 1152
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV +C MH+P T LKR+LRY++GT+ GL + + L +
Sbjct: 1153 LQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSA 1212
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+D GC +TRRST+G+C+ LG NLISWS+KRQPT+S SS EAEYR + E WI
Sbjct: 1213 YSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWI 1272
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL +L P T V+CDN+SA+YLS NP H R+KH + D H++RE+VA G H
Sbjct: 1273 SFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLIETQH 1332
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSV-GEPPASTAG 338
+ + Q+AD+FTK LPR F D RS L V G P S G
Sbjct: 1333 ISATFQLADVFTKSLPRRAFVDLRSKLGVSGSPTPSLRG 1371
>UniRef100_O24438 Retrofit [Oryza longistaminata]
Length = 1445
Score = 326 bits (835), Expect = 6e-88
Identities = 158/331 (47%), Positives = 224/331 (66%), Gaps = 2/331 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF +G + ++L+YVDDII+ +S+ + + L EFA+KDLG L YFLGI V
Sbjct: 1112 DTSLFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEV 1171
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPC--EDATLYRSLA 118
T+ + G+ L+Q YA++++ R M++C P +TP+ +KL+ G+P DA YRS+
Sbjct: 1172 TKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIV 1231
Query: 119 GALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
GALQYLT TRPDI+Y+V +VC +HAP T H +A+KR+LRY+ + GLH++ S +
Sbjct: 1232 GALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLV 1291
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESC 238
Y+DADW G D R+ST G+ VFLG NL+SWS+++QPT+SRSS EAEY+ VAN +E
Sbjct: 1292 HGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELI 1351
Query: 239 WIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARV 298
W++ LL EL +A + CDN+ A YLS NPV H RTKHIE+D HFVRE+V++ +
Sbjct: 1352 WVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEI 1411
Query: 299 LHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
VPS Q+AD FTK L L ++F+ +L++
Sbjct: 1412 DFVPSGDQVADGFTKALSACLLENFKHNLNL 1442
>UniRef100_Q8W0X9 Putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 325 bits (833), Expect = 1e-87
Identities = 154/331 (46%), Positives = 230/331 (68%), Gaps = 2/331 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF + +G+ ++L+YVDDII+ +S+H ++ ++ L EFA+KDLG L+YFLGI V
Sbjct: 980 DTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEV 1039
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPC--EDATLYRSLA 118
+ G+ L+Q YAS+++ + GM+ C P +TP+ T +KLS G+P +D T YRS+
Sbjct: 1040 NKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIV 1099
Query: 119 GALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
GALQYLT TRPDI+++V +VC +HAP T H A+KR+LRY++ GLH++ S +
Sbjct: 1100 GALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLV 1159
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESC 238
+++DADW G D R+ST G+ VFLG NL+SWS+++QPT+SRSS E+EY+ +AN +E
Sbjct: 1160 SAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELI 1219
Query: 239 WIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARV 298
W++ LL E+ +A + CDN+ A YLS NP+ H RTKHIE+D HFVR++VA+ +
Sbjct: 1220 WVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDI 1279
Query: 299 LHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
+VP+ Q+AD FTK L L ++F+ +L++
Sbjct: 1280 EYVPTGDQVADGFTKPLSVRLLENFKVNLNL 1310
>UniRef100_Q9SXF0 T3P18.3 [Arabidopsis thaliana]
Length = 1309
Score = 323 bits (829), Expect = 3e-87
Identities = 163/335 (48%), Positives = 210/335 (62%), Gaps = 2/335 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ + +LLYVDDI+L S L + L + F+MKDLGP YFLGI +
Sbjct: 896 DPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEI 955
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ GLFL Q YAS+I+ +AGM CNP TP+ Q L + P E+ T +RSLAG
Sbjct: 956 ESYNNGLFLHQHAYASDILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRSLAGK 1013
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI YAV +C MHAP LKR+LRYV+GT+ GL + L
Sbjct: 1014 LQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSG 1073
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
+ D+D+ GC DTRRST+G+C+ LG LISWS+KRQPT+S SS EAEYR +++ E WI
Sbjct: 1074 FCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWI 1133
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL +L Q T V CDN+SA+YLS NP H+R+KH + D H++RE+VA G H
Sbjct: 1134 SSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQH 1193
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
+P+ Q+AD+FTK LPR F R+ L V P S
Sbjct: 1194 IPATIQLADVFTKSLPRRPFITLRAKLGVSASPVS 1228
>UniRef100_Q94IU9 Copia-like polyprotein [Arabidopsis thaliana]
Length = 1466
Score = 323 bits (829), Expect = 3e-87
Identities = 163/335 (48%), Positives = 210/335 (62%), Gaps = 2/335 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF+ + +LLYVDDI+L S L + L + F+MKDLGP YFLGI +
Sbjct: 1053 DPSLFVCHQNGQSLILLLYVDDILLTGSDQLLMDKLLQALNNRFSMKDLGPPRYFLGIEI 1112
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
+ GLFL Q YAS+I+ +AGM CNP TP+ Q L + P E+ T +RSLAG
Sbjct: 1113 ESYNNGLFLHQHAYASDILHQAGMTECNPMPTPLP--QHLEDLNSEPFEEPTYFRSLAGK 1170
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI YAV +C MHAP LKR+LRYV+GT+ GL + L
Sbjct: 1171 LQYLTITRPDIQYAVNFICQRMHAPTNSDFGLLKRILRYVKGTINMGLPIRKHHNPVLSG 1230
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
+ D+D+ GC DTRRST+G+C+ LG LISWS+KRQPT+S SS EAEYR +++ E WI
Sbjct: 1231 FCDSDYAGCKDTRRSTTGFCILLGSTLISWSAKRQPTISHSSTEAEYRALSDTAREITWI 1290
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
+LL +L Q T V CDN+SA+YLS NP H+R+KH + D H++RE+VA G H
Sbjct: 1291 SSLLRDLGISQHQPTRVFCDNLSAVYLSANPALHKRSKHFDKDFHYIRERVALGLIETQH 1350
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAS 335
+P+ Q+AD+FTK LPR F R+ L V P S
Sbjct: 1351 IPATIQLADVFTKSLPRRPFITLRAKLGVSASPVS 1385
>UniRef100_Q75LJ1 Putative copia-like retrotransposon protein [Oryza sativa]
Length = 1399
Score = 323 bits (827), Expect = 5e-87
Identities = 158/331 (47%), Positives = 225/331 (67%), Gaps = 2/331 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF +++G ++L+YVDDII+ +S + + L+ +FA+KDLG L YFLGI V
Sbjct: 1060 DTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEV 1119
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPC--EDATLYRSLA 118
+ GL LSQ YAS+++ R GM C P +TP+ T +KLS + GT +D+T YRS+
Sbjct: 1120 HKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVV 1179
Query: 119 GALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
GALQYLT TRPDIS+++ +VC +HAP T H A+KR+LRYV+ T+ GL +P +
Sbjct: 1180 GALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLV 1239
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESC 238
++DADW G PD RRST G+ VFLG NL+SWS+++Q T+SRSS EAEY+ +AN +E
Sbjct: 1240 SGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALANATAEIM 1299
Query: 239 WIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARV 298
W++ LL EL +A + CDN+ A YLS NP+ H RTKHIE+D HFVRE+VAR +
Sbjct: 1300 WVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEI 1359
Query: 299 LHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
++ ++ Q+AD FTK +P + F+++L++
Sbjct: 1360 AYISTKDQVADGFTKAIPVRQMEMFKNNLNL 1390
>UniRef100_Q7XE22 Putative gag-pol polyprotein [Oryza sativa]
Length = 932
Score = 320 bits (821), Expect = 3e-86
Identities = 161/332 (48%), Positives = 222/332 (66%), Gaps = 2/332 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF + +G +IL+YVDDII+ +SS + + + L +FA+KDLG L YFLGI V
Sbjct: 601 DTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEV 660
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPC--EDATLYRSLA 118
+ + GL LSQ+ YAS+I+ RAGM+ C P++TP+ T +KLS G DA+ YRS+
Sbjct: 661 KKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIV 720
Query: 119 GALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
GALQYLT TR D+S+ V +VC +H+P T H A+KR+LRY++GT+ +GL S +
Sbjct: 721 GALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLI 780
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESC 238
+++DADW GC D RRST G+ VFLG NLISWS+++Q T+SRSS EAEY+ +AN +E
Sbjct: 781 SAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVT 840
Query: 239 WIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARV 298
W+R +L EL + CDN+ A YLS NPV H RTKHIE+D HFVRE+VA+ +
Sbjct: 841 WVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDI 900
Query: 299 LHVPSRHQIADIFTKGLPRVLFDDFRSSLSVG 330
+ + Q+AD FTK LP +R +L++G
Sbjct: 901 QFISTTDQLADGFTKSLPAPSLAQYRHNLNLG 932
>UniRef100_Q94KV0 Polyprotein [Arabidopsis thaliana]
Length = 1453
Score = 320 bits (821), Expect = 3e-86
Identities = 160/336 (47%), Positives = 215/336 (63%), Gaps = 2/336 (0%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
D SLF + + +LLYVDDI+L S H L + + L F+MKDLG SYFLG+ +
Sbjct: 1061 DPSLFTYHKNGKTLVLLLYVDDILLTGSDHNLLQELLMSLNKRFSMKDLGAPSYFLGVEI 1120
Query: 61 TRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGA 120
GLFL Q+ YA +I+ +A M++CN TP+ Q + + + + T +RSLAG
Sbjct: 1121 ESSPEGLFLHQTAYAKDILHQAAMSNCNSMPTPLP--QHIENLNSDLFPEPTYFRSLAGK 1178
Query: 121 LQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVS 180
LQYLT TRPDI +AV +C MH+P T LKR+LRYV+GT+ GLH+ + LV+
Sbjct: 1179 LQYLTITRPDIQFAVNFICQRMHSPTTADFGLLKRILRYVKGTIHLGLHIKKNQNLSLVA 1238
Query: 181 YTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWI 240
Y+D+DW GC +TRRST+G+C LG NLISWS+KRQ T+S+SS EAEYR + V E W+
Sbjct: 1239 YSDSDWAGCKETRRSTTGFCTLLGCNLISWSAKRQETVSKSSTEAEYRALTAVAQELTWL 1298
Query: 241 RNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLH 300
LL ++ + TLV CDN+SA+YLS NP H R+KH + D H++RE+VA G H
Sbjct: 1299 SFLLRDIGVTQTHPTLVKCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLVETKH 1358
Query: 301 VPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPAST 336
+ + Q+ADIFTK LPR F D R L V EPP ++
Sbjct: 1359 ISATLQLADIFTKPLPRRAFIDLRIKLGVAEPPTTS 1394
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,223,043
Number of Sequences: 2790947
Number of extensions: 20117177
Number of successful extensions: 42512
Number of sequences better than 10.0: 860
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 40588
Number of HSP's gapped (non-prelim): 1057
length of query: 338
length of database: 848,049,833
effective HSP length: 128
effective length of query: 210
effective length of database: 490,808,617
effective search space: 103069809570
effective search space used: 103069809570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0343.1