BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0335a.8
(104 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9C9K1 Putative chlorophyll A-B binding protein; 65434... 177 4e-44
UniRef100_Q69TB3 Putative chlorophyll a/b-binding protein [Oryza... 177 4e-44
UniRef100_Q9XF87 Lhcb2 protein [Arabidopsis thaliana] 102 2e-21
UniRef100_Q9XF86 Lhcb2 protein [Arabidopsis thaliana] 102 2e-21
UniRef100_Q9SYW9 Lhcb2 protein [Arabidopsis thaliana] 102 2e-21
UniRef100_Q9SHR7 Putative chlorophyll a/b binding protein [Arabi... 102 2e-21
UniRef100_Q9S7J7 Putative chlorophyll a/b binding protein [Arabi... 102 2e-21
UniRef100_Q8VZ87 Chlorophyll a/b-binding protein [Arabidopsis th... 102 2e-21
UniRef100_P12470 Chlorophyll a-b binding protein E, chloroplast ... 102 2e-21
UniRef100_P12469 Chlorophyll a-b binding protein C, chloroplast ... 102 2e-21
UniRef100_P27522 Chlorophyll a-b binding protein 8, chloroplast ... 102 2e-21
UniRef100_Q9SWE9 Chlorophyll a/b binding protein [Rumex palustris] 101 4e-21
UniRef100_Q8W159 Chlorophyll a/b binding protein [Brassica olera... 101 4e-21
UniRef100_P04778 Chlorophyll a-b binding protein 2, chloroplast ... 101 4e-21
UniRef100_P13851 Chlorophyll a-b binding protein 1, chloroplast ... 101 4e-21
UniRef100_P04777 Chlorophyll a-b binding protein 165/180, chloro... 101 4e-21
UniRef100_Q6EQF5 Putative chlorophyll a-b binding protein, chlor... 101 5e-21
UniRef100_Q41003 Petunia major chlorophyll a/b binding protein (... 101 5e-21
UniRef100_Q40956 Type 2 light-harvesting chlorophyll a/b-binding... 101 5e-21
UniRef100_Q00984 Chlorophyll a/b-binding protein precursor [Pinu... 101 5e-21
>UniRef100_Q9C9K1 Putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
Length = 327
Score = 177 bits (450), Expect = 4e-44
Identities = 82/97 (84%), Positives = 87/97 (89%)
Query: 1 VGPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAM 60
VGPEYARYCG EALEPLGIYLPGDINYPGG LFDPLNLS+DP AF +LKVKEIKNGRLAM
Sbjct: 229 VGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAM 288
Query: 61 IAWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLLGSL 97
+AWLGFY QAA TGKGPVQNL+DH SDP HNNL+ L
Sbjct: 289 VAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAML 325
>UniRef100_Q69TB3 Putative chlorophyll a/b-binding protein [Oryza sativa]
Length = 321
Score = 177 bits (450), Expect = 4e-44
Identities = 80/96 (83%), Positives = 89/96 (92%)
Query: 1 VGPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAM 60
VGPEYARYCG EALEPLG+YLPGDINYPGGALFDPL LSKDP AF +LKVKEIKNGRLAM
Sbjct: 224 VGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAM 283
Query: 61 IAWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLLGS 96
+AWLGFY+QAA+TGKGP+QNL++H SDP HNN+L S
Sbjct: 284 VAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSS 319
Score = 35.4 bits (80), Expect = 0.33
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G E R+ G E +L G+ YPG FD L +DP AFA EI + R AM+
Sbjct: 103 GDERPRWLGPVPYE-YPAHLTGE--YPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAML 159
Query: 62 AWLGFYMQAALTGKGPVQNLLDHFSDP 88
A LG + L G V HF +P
Sbjct: 160 AALGVVVPELLDLFGVV-----HFVEP 181
>UniRef100_Q9XF87 Lhcb2 protein [Arabidopsis thaliana]
Length = 266
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 181 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 237
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 238 GPIENLFDHIADPVANN 254
Score = 40.0 bits (92), Expect = 0.013
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 109 GALGCTFPEILSKNG 123
>UniRef100_Q9XF86 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.013
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>UniRef100_Q9SYW9 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.013
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>UniRef100_Q9SHR7 Putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.013
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>UniRef100_Q9S7J7 Putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 265
Score = 102 bits (255), Expect = 2e-21
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPLNL++DPEAF+ELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 237 GPIENLFDHLADPVANN 253
Score = 40.0 bits (92), Expect = 0.013
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ YPG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GPDRPKYLGPFS-ENTPSYLTGE--YPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 108 GALGCTFPEILSKNG 122
>UniRef100_Q8VZ87 Chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 102 bits (255), Expect = 2e-21
Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TG
Sbjct: 181 EPLGE--AEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 238 KGPIENLADHLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.050
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>UniRef100_P12470 Chlorophyll a-b binding protein E, chloroplast precursor [Nicotiana
plumbaginifolia]
Length = 266
Score = 102 bits (255), Expect = 2e-21
Identities = 51/78 (65%), Positives = 63/78 (80%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TG
Sbjct: 180 EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTG 236
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
Score = 37.4 bits (85), Expect = 0.086
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 109 GALGCVFPELLARNG 123
>UniRef100_P12469 Chlorophyll a-b binding protein C, chloroplast precursor [Nicotiana
plumbaginifolia]
Length = 267
Score = 102 bits (255), Expect = 2e-21
Identities = 51/78 (65%), Positives = 63/78 (80%), Gaps = 3/78 (3%)
Query: 15 EPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTG 74
EPLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TG
Sbjct: 181 EPLGEVV--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 75 KGPVQNLLDHFSDPFHNN 92
KGP++NL DH +DP +NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 53 GPNRVKYLGPFSGESPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 110 GALGCVFPELLARNG 124
>UniRef100_P27522 Chlorophyll a-b binding protein 8, chloroplast precursor
[Lycopersicon esculentum]
Length = 273
Score = 102 bits (255), Expect = 2e-21
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 23 GDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLL 82
GD YPGG LF+PL KD ++ ELK+KEIKNGRLAM+A LG+++QA +TG GP QNLL
Sbjct: 196 GDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLL 255
Query: 83 DHFSDPFHNNLLGSLNF 99
DH +DP +NN+L SL F
Sbjct: 256 DHLADPVNNNVLTSLKF 272
>UniRef100_Q9SWE9 Chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 101 bits (252), Expect = 4e-21
Identities = 52/77 (67%), Positives = 61/77 (78%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGK
Sbjct: 179 PLGEDL--DKLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 235
Query: 76 GPVQNLLDHFSDPFHNN 92
GPV+NL+DH +DP NN
Sbjct: 236 GPVENLVDHIADPVANN 252
Score = 38.9 bits (89), Expect = 0.029
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 50 GPDRPKYLGPFS-EQTPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 106
Query: 62 AWLGFYMQAALTGKG 76
LG L+ G
Sbjct: 107 GALGCVFPELLSKNG 121
>UniRef100_Q8W159 Chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 101 bits (252), Expect = 4e-21
Identities = 47/69 (68%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 187 DLLYPGGS-FDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 246 HLADPVNNN 254
Score = 37.0 bits (84), Expect = 0.11
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GSDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>UniRef100_P04778 Chlorophyll a-b binding protein 2, chloroplast precursor
[Arabidopsis thaliana]
Length = 267
Score = 101 bits (252), Expect = 4e-21
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.050
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>UniRef100_P13851 Chlorophyll a-b binding protein 1, chloroplast precursor [Sinapis
alba]
Length = 266
Score = 101 bits (252), Expect = 4e-21
Identities = 47/69 (68%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 187 DLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 246 HLADPVNNN 254
Score = 37.0 bits (84), Expect = 0.11
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + +Y G + EP YL G+ +PG +D LS DPE FA + E+ + R AM+
Sbjct: 51 GSDRVKYLGPFSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFARNRELEVIHCRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>UniRef100_P04777 Chlorophyll a-b binding protein 165/180, chloroplast precursor
[Arabidopsis thaliana]
Length = 267
Score = 101 bits (252), Expect = 4e-21
Identities = 46/69 (66%), Positives = 58/69 (83%), Gaps = 1/69 (1%)
Query: 24 DINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLD 83
D+ YPGG+ FDPL L+ DPEAFAELKVKE+KNGRLAM + GF++QA +TGKGP++NL D
Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 246
Query: 84 HFSDPFHNN 92
H +DP +NN
Sbjct: 247 HLADPVNNN 255
Score = 38.1 bits (87), Expect = 0.050
Identities = 27/82 (32%), Positives = 39/82 (46%), Gaps = 9/82 (10%)
Query: 2 GPEYARYCGSEALEPLG-------IYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIK 54
GP + + GS+ ++ LG YL G+ +PG +D LS DPE FA + E+
Sbjct: 44 GPSGSPWYGSDRVKYLGPFSGESPSYLTGE--FPGDYGWDTAGLSADPETFARNRELEVI 101
Query: 55 NGRLAMIAWLGFYMQAALTGKG 76
+ R AM+ LG L G
Sbjct: 102 HSRWAMLGALGCVFPELLARNG 123
>UniRef100_Q6EQF5 Putative chlorophyll a-b binding protein, chloroplast [Oryza
sativa]
Length = 265
Score = 101 bits (251), Expect = 5e-21
Identities = 51/77 (66%), Positives = 61/77 (78%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 180 PLGEVV--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 237 GPLENLADHLADPVNNN 253
Score = 37.0 bits (84), Expect = 0.11
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
G + Y G + EP YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 51 GADRVLYLGPLSGEPPS-YLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 108 GALGCVFPELLARNG 122
>UniRef100_Q41003 Petunia major chlorophyll a/b binding protein (Cab) clone pCab146,
3' end and flank [Petunia hybrida]
Length = 125
Score = 101 bits (251), Expect = 5e-21
Identities = 50/77 (64%), Positives = 62/77 (79%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG + D YPGG+ FDPL L++DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 40 PLGEVI--DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 96
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP +NN
Sbjct: 97 GPLENLADHLADPVNNN 113
>UniRef100_Q40956 Type 2 light-harvesting chlorophyll a/b-binding polypeptide [Pinus
palustris]
Length = 246
Score = 101 bits (251), Expect = 5e-21
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 161 PLGEGL--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 217
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 218 GPIENLYDHLADPVANN 234
Score = 38.9 bits (89), Expect = 0.029
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 32 GPDRPKYLGPFS-EQTPSYLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 88
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 89 GALGCVFPELLAKNG 103
>UniRef100_Q00984 Chlorophyll a/b-binding protein precursor [Pinus thunbergii]
Length = 266
Score = 101 bits (251), Expect = 5e-21
Identities = 52/77 (67%), Positives = 60/77 (77%), Gaps = 3/77 (3%)
Query: 16 PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGK 75
PLG L D YPGGA FDPL L+ DPEAFAELKVKEIKNGRLAM + GF++QA +TGK
Sbjct: 181 PLGEGL--DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 76 GPVQNLLDHFSDPFHNN 92
GP++NL DH +DP NN
Sbjct: 238 GPIENLYDHLADPVANN 254
Score = 37.4 bits (85), Expect = 0.086
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Query: 2 GPEYARYCGSEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMI 61
GP+ +Y G + E YL G+ +PG +D LS DPE FA+ + E+ + R AM+
Sbjct: 52 GPDRPKYLGPFS-EGTPSYLTGE--FPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 62 AWLGFYMQAALTGKG 76
LG L G
Sbjct: 109 GALGCLFPELLAKNG 123
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.320 0.144 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,421,615
Number of Sequences: 2790947
Number of extensions: 7879413
Number of successful extensions: 15940
Number of sequences better than 10.0: 433
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 15149
Number of HSP's gapped (non-prelim): 787
length of query: 104
length of database: 848,049,833
effective HSP length: 80
effective length of query: 24
effective length of database: 624,774,073
effective search space: 14994577752
effective search space used: 14994577752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0335a.8