BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0303.2
         (291 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]               86  1e-15
UniRef100_Q7XKF8 OSJNBb0065J09.11 protein [Oryza sativa]               84  3e-15
UniRef100_Q8H992 Oryza sativa (japonica cultivar-group) retrotra...    83  1e-14
UniRef100_Q84JX8 Putative reverse transcriptase [Oryza sativa]         78  2e-13
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip...    77  4e-13
UniRef100_Q7XXJ4 OSJNBa0094O15.6 protein [Oryza sativa]                77  4e-13
UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa]               77  4e-13
UniRef100_Q8SAZ6 Putative non-LTR retroelement reverse transcrip...    77  5e-13
UniRef100_Q8LMT3 Putative retroelement [Oryza sativa]                  75  2e-12
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip...    75  2e-12
UniRef100_Q5ZDG9 Hypothetical protein P0480E02.9 [Oryza sativa]        75  2e-12
UniRef100_Q65WR1 Putative polyprotein [Oryza sativa]                   74  3e-12
UniRef100_Q7XT18 OSJNBb0050O03.4 protein [Oryza sativa]                74  3e-12
UniRef100_Q84Q64 Hypothetical protein OSJNBa0071M09.16 [Oryza sa...    74  6e-12
UniRef100_Q9LH23 Similar to Arabidopsis thaliana low temperature...    74  6e-12
UniRef100_Q8S7Y0 Putative retroelement [Oryza sativa]                  72  1e-11
UniRef100_Q5SMW3 Cyst nematode resistance protein-like [Oryza sa...    71  4e-11
UniRef100_Q7XMF6 OSJNBa0061G20.3 protein [Oryza sativa]                70  7e-11
UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sa...    70  7e-11
UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor]      69  1e-10

>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
          Length = 1026

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 74/248 (29%), Positives = 114/248 (45%), Gaps = 18/248 (7%)

Query: 1   TKILKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRR 60
           TKI+ +G+ T FW D WLG   L   F  LY +   K   +  L     G    KF  RR
Sbjct: 728 TKIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVITKRITIADLN--RKGIDCMKF--RR 783

Query: 61  PLVGREL-EWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDE 119
            L G +L +W K ++++   + L +   D   W  S  G ++V S Y  L+   L  T  
Sbjct: 784 DLHGDKLRDWRK-IVNSWEGLNLVENCKDKLWWTLSKDGKFTVRSFYRALK---LQQTSF 839

Query: 120 ALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLL 179
               IW    P  ++ F W    ++  +++NLLKR       D +C  C D VET  HL 
Sbjct: 840 PNKKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRG--WRKGDNKCQFC-DKVETVQHLF 896

Query: 180 FSCTFSLSVWQGCLHWLGCSF-IQP-SSARDHLSHFRFGINKLQQRLALSIWLAVIWSVW 237
           F C  +  +W    + + C+  ++P  S +D    +   ++K  + L +    AV+WS+W
Sbjct: 897 FDCPLARLIW----NIIACALNVKPVLSRQDLFGSWIQSMDKFTKNLVIVGIAAVLWSIW 952

Query: 238 LARNEVVF 245
             RN+  F
Sbjct: 953 KCRNKACF 960


>UniRef100_Q7XKF8 OSJNBb0065J09.11 protein [Oryza sativa]
          Length = 436

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 68/280 (24%), Positives = 121/280 (42%), Gaps = 15/280 (5%)

Query: 1   TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
           TKI +  G++T FW   W+     +     +Y +S+ +   ++     E   W    ++ 
Sbjct: 154 TKITVGDGNMTRFWDSTWIDGRRPKDLMPLVYAISKNRKKSLHQ--GKEDDTWVDDLIFD 211

Query: 60  R--PLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDT 117
               +    +E    L +A+  VQL    PD  VW  +  G Y+ +SAYH  Q    P T
Sbjct: 212 AGSTITVNLVEQLVRLWEAVRNVQLVSEEPDQIVWKFTGNGHYTASSAYH-AQCLEAPST 270

Query: 118 DEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFH 177
           +   + IW ++AP   K + W ++ +R  + + L  R    +     C LC    ETG H
Sbjct: 271 NLNSL-IWKAWAPGKCKFYVWLIIQNRVWTSDRLAIRGWQNN---GHCPLCRCEAETGLH 326

Query: 178 LLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF-----GINKLQQRLALSIWLAV 232
           L+ +C ++  +W     W+G   ++PS   +  S  ++         + ++   S+ L V
Sbjct: 327 LVATCRYTKRIWHHVAGWVGYHQLEPSQWEEAQSVCQWWESLANTPNIPKKGLRSLILLV 386

Query: 233 IWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
           +W +W  RN  +F      +  +L  +K  +  W  A  K
Sbjct: 387 VWEIWKERNRRIFDNKEMAVGLLLAKIKEEASVWALAGAK 426


>UniRef100_Q8H992 Oryza sativa (japonica cultivar-group) retrotransposon Karma DNA,
            complete sequence [Oryza sativa]
          Length = 1197

 Score = 82.8 bits (203), Expect = 1e-14
 Identities = 72/261 (27%), Positives = 116/261 (43%), Gaps = 22/261 (8%)

Query: 7    GDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPLVGRE 66
            G  T FWHD W G   L   F  L++ S      V  + S+      +  L  R     +
Sbjct: 929  GSRTSFWHDRWTGNMTLAAQFESLFSHSTDDLATVEQILSFGI----YDILTPRLSSAAQ 984

Query: 67   LEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIWH 126
             + ++ L   L    LT    ++   + + +G  +  + Y     P  P  +     IW 
Sbjct: 985  NDLQE-LQTILQNFSLTN---ESDTRLNNRLGNLTTKTIYDLRSPPGFPSPNWKF--IWD 1038

Query: 127  SFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSL 186
               P  +K FAW ++ DR +++ NLLK++++ +   A C +C+   ET  HL F+C F++
Sbjct: 1039 CRMPLKIKLFAWLLVRDRLSTKLNLLKKKIVQT---ATCDICSTTDETADHLSFNCPFAI 1095

Query: 187  SVWQGCLHWLGCSFIQP-SSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVF 245
            S WQ  LH      IQP  +   +LS  +     +  R   S ++   W +W  R++VVF
Sbjct: 1096 SFWQ-ALH------IQPIINETKYLSQLKAPAT-IPTRHFQSFFMLCFWVLWNHRHDVVF 1147

Query: 246  RGGAANIYSVLELVKRRSWQW 266
            RG   +I S L+     S  W
Sbjct: 1148 RGRPPSIASCLQRGISESSLW 1168


>UniRef100_Q84JX8 Putative reverse transcriptase [Oryza sativa]
          Length = 1349

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 73/264 (27%), Positives = 106/264 (39%), Gaps = 13/264 (4%)

Query: 1    TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
            TKI + +G    FW+D+W      +     +Y L+++K N +      E    HW  +  
Sbjct: 1084 TKITVGNGIKISFWNDNWKDGQSPKDIAPAIYRLAKRKSNSLKK----ELEDNHWLAMLH 1139

Query: 60   RPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDE 119
                  E+E    L   L  V L  G  D   W  +  G YS  SAY  L +    +   
Sbjct: 1140 PITSLVEIEELIQLGGLLQNVNLVAGQTDDISWRWTANGQYSAKSAY--LAQFQGSNALI 1197

Query: 120  ALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLL 179
                +W +FA      F W +L  R  + ENLL+R       D  C+LCN   E   HL 
Sbjct: 1198 EFTPLWSAFAEPKHHFFGWLILHQRTLTAENLLRRHWP---CDWICSLCNSAFEDAAHLA 1254

Query: 180  FSCTFSLSVWQGCLHWLGCSFIQ---PSSARDHLSHFRFGINKLQQRLALSIWLAVIWSV 236
              C F+++VW     W+     Q     +  D  S F     +  +   L   +   W+V
Sbjct: 1255 KECPFTVTVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQNRNKVLGALITTWWNV 1314

Query: 237  WLARNEVVFRGGAANIYSVLELVK 260
            WL RN  +F+  + N   V  LVK
Sbjct: 1315 WLERNRRIFQQISKNELQVAILVK 1338


>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 77.4 bits (189), Expect = 4e-13
 Identities = 57/197 (28%), Positives = 90/197 (44%), Gaps = 23/197 (11%)

Query: 85  GVPDAWVWMPSNVGIYSVNSAYHFL------QEPTLPDTDEA-----LVSIWHSFAPSNV 133
           G  DA  W+ ++ G YSV S YH L      Q  +LP  +E        +IW   AP  +
Sbjct: 451 GANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKI 510

Query: 134 KGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSLSVW-QGC 192
           K F WR   +   +  NL +R++IT   D  C  C +  E   HLLF C  S  +W Q  
Sbjct: 511 KHFWWRSAHNALPTAGNLKRRRLIT---DDTCQRCGEASEDVNHLLFQCRVSKEIWEQAH 567

Query: 193 LHWLGCSFIQPSSARDHLSHFRFGINKLQQ--RLALSIWLAVIWSVWLARNEVVFRGGAA 250
           +       +  +S   +L      I KL Q  R  +S++  + W +W  RN+++F     
Sbjct: 568 IKLCPGDSLMSNSFNQNLE----SIQKLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRW 623

Query: 251 NIYSVLE--LVKRRSWQ 265
           +I   ++  L+ ++ W+
Sbjct: 624 SIPDSIQKALIDQQQWK 640


>UniRef100_Q7XXJ4 OSJNBa0094O15.6 protein [Oryza sativa]
          Length = 699

 Score = 77.4 bits (189), Expect = 4e-13
 Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 13/264 (4%)

Query: 1   TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
           TKI + +G  T FW+D+W+     +     +Y L+++K N +      E    HW  +  
Sbjct: 434 TKITVGNGIKTSFWNDNWMDGQSPKDIAPAIYRLAKRKSNSLKK----ELEDNHWLEMLH 489

Query: 60  RPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDE 119
                 E+E    L   L  + L  G  D   W  +  G YS  SAY    + +   T+ 
Sbjct: 490 PITSLVEIEELIQLGGLLQHINLVAGQTDDISWRWTANGQYSAKSAYLAQFQGSNALTE- 548

Query: 120 ALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLL 179
               +W +FA    + F W +L  R  + ENLL+R       D   +LCN   E   HL 
Sbjct: 549 -FTPLWSAFAEPKHRFFGWLILHQRTLTAENLLRRHWP---CDWIRSLCNSAFEDAAHLA 604

Query: 180 FSCTFSLSVWQGCLHWLGCSFIQ---PSSARDHLSHFRFGINKLQQRLALSIWLAVIWSV 236
             C F+++VW     W+     Q     +  D  S F     +  +   L   +   W+V
Sbjct: 605 KECPFTVTVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQNRNKVLRALITTWWNV 664

Query: 237 WLARNEVVFRGGAANIYSVLELVK 260
           WL RN  +F+  + N   V  LVK
Sbjct: 665 WLERNRRIFQQISKNELQVAFLVK 688


>UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa]
          Length = 1189

 Score = 77.4 bits (189), Expect = 4e-13
 Identities = 73/284 (25%), Positives = 118/284 (40%), Gaps = 23/284 (8%)

Query: 1    TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTL---GSWEHGRWHWKF 56
            TKI +  G+ T FW   W+     +     +Y +S+ +   +       SW H       
Sbjct: 907  TKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHDLTLDAG 966

Query: 57   LWRRPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPD 116
            L    +    L+    L +A+  V L    PD  VW  ++ G Y+ +SAYH  Q    P+
Sbjct: 967  L---SITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYH-AQCLGAPN 1022

Query: 117  TDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGF 176
            T+   + IW  +AP   K  AW ++ +R  + + L  R    +     C LC    ET F
Sbjct: 1023 TNFNSL-IWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNN---GHCPLCRCDTETAF 1078

Query: 177  HLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF--------GINKLQQRLALSI 228
            HL+  C ++  +W+    W G   ++P+   +  S  ++        GI K   R   S+
Sbjct: 1079 HLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQWWESLANTPGIPKKGLR---SL 1135

Query: 229  WLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
             L V+W +W  RN  +F         +L  +K  +  W  A  K
Sbjct: 1136 ILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAK 1179


>UniRef100_Q8SAZ6 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 362

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 57/175 (32%), Positives = 78/175 (44%), Gaps = 19/175 (10%)

Query: 77  LGTVQLTKGVPDAW--VWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVK 134
           L +V L +G  D W  +W   N+  YS    Y        P     LV IW +     +K
Sbjct: 163 LDSVHLNEGFGDHWSYIW---NIDKYSAQRLYKMNYSCLQPS--RLLVWIWKTKCVIKIK 217

Query: 135 GFAWRVLLDRFASRENLLKRQVITSLADAQCALC-NDYVETGFHLLFSCTFSLSVWQGC- 192
            FAW + LDRF +R+ L +R       D  C LC  D  ET  H+ F+C +SL  WQ   
Sbjct: 218 VFAWLLSLDRFNTRDMLDRRHCAKENDDLTCVLCYGDLRETKLHIFFACPYSLRCWQLLG 277

Query: 193 LHW-LGCSFIQPSSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVFR 246
            HW L  +F Q       L+  RFG+        L I+    W +W  RN ++F+
Sbjct: 278 FHWFLNLNFFQMVV----LARNRFGMKGF-----LEIFFIAAWYIWKQRNGMIFQ 323


>UniRef100_Q8LMT3 Putative retroelement [Oryza sativa]
          Length = 764

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 70/243 (28%), Positives = 101/243 (40%), Gaps = 15/243 (6%)

Query: 6   SGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPLVGR 65
           +G  T+FW D W+G   L+  +  +Y +   K   V+ +     G W+ +   RR L  R
Sbjct: 465 NGKATNFWSDVWIGETPLKTQYPNIYRMCADKEKTVSQM--CLEGDWYIEL--RRSLGER 520

Query: 66  ELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIW 125
           +L     L +    + L K   D  +W  +  G Y   + Y  L    +   D+ +  +W
Sbjct: 521 DLNEWNDLHNTPREIHL-KEERDCIIWKLTKNGFYKAKTLYQALSFGGV--KDKVMQDLW 577

Query: 126 HSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFS 185
            S  P  VK   W +L  R  +   L K +   S     C LC    E   HL+F C  S
Sbjct: 578 RSSIPLKVKILFWLMLKGRIQAAGQLKKMKWSGS---PNCKLCGQ-TEDVDHLMFRCHIS 633

Query: 186 LSVWQGCLHWLGCSFIQPSSARDHLSHFRFGINKLQQRLALSIWLAV-IWSVWLARNEVV 244
             +W       G   I PSS  D L   +  I K  Q+  L   LA   W++WL RN+ V
Sbjct: 634 QFMWCCYRDAFGWDNI-PSSREDLLE--KLNIQKDGQKSVLLACLAAGTWAIWLMRNDWV 690

Query: 245 FRG 247
           F G
Sbjct: 691 FNG 693


>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1319

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 80/319 (25%), Positives = 125/319 (39%), Gaps = 55/319 (17%)

Query: 2    KILKSGDVTDFWHDDWLGTGCLRGAF--YRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
            +++ +G+ T+ W D WL  G  R     + L N+  +  + ++ L       W+ K L  
Sbjct: 876  RLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTR----NWNLKKL-- 929

Query: 60   RPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYH----------FL 109
                  EL  EK +   +    L     D++ W  +N G+Y+V S Y           F 
Sbjct: 930  -----TELFHEKDVQLIMHQRPLISS-EDSYCWAGTNNGLYTVKSGYERSSRETFKNLFK 983

Query: 110  QEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCN 169
            +    P  +     +W       +K F W+ L    A  + L  R + T  AD  C  C 
Sbjct: 984  EADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRT--ADG-CLFCK 1040

Query: 170  DYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQP------SSARDHLSHF-----RFGIN 218
            + +ET  HLLF C F+  VW         S IQ       +S   +++H       FGI 
Sbjct: 1041 EEIETINHLLFQCPFARQVW-------ALSLIQAPATGFGTSIFSNINHVIQNSQNFGIP 1093

Query: 219  KLQQRLALSIWLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK---GFS 275
            +  +   +S WL  +W +W  RN+ +F+G       ++         W  A  K   G S
Sbjct: 1094 RHMR--TVSPWL--LWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKSSGGVS 1149

Query: 276  YSSSDWFSNP---LLCILG 291
             S   W   P   L C +G
Sbjct: 1150 PSEHKWNPPPAGELKCNIG 1168


>UniRef100_Q5ZDG9 Hypothetical protein P0480E02.9 [Oryza sativa]
          Length = 385

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 65/282 (23%), Positives = 104/282 (36%), Gaps = 26/282 (9%)

Query: 7   GDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPL---- 62
           G    FW   WL    L+     +Y  S++K + +      +         W + L    
Sbjct: 116 GTKVSFWDSGWLQGRRLKDVAPLVYAASKKKTSTLQQASLSDQ--------WMQDLDLPE 167

Query: 63  -VGRELEWEKGLLDALGTVQ---LTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTD 118
             G  +E    L++    VQ   L +   D   W  ++ G Y+  SAY      T     
Sbjct: 168 NTGWSIELIDQLIEVWSVVQNLHLIEHEEDKITWKLTSHGEYTTTSAYKAQLLGTTATNF 227

Query: 119 EALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHL 178
             L  IW  +AP   K FAW ++ +R  +   L  R        + C LC    ET  HL
Sbjct: 228 NNL--IWKPWAPHKCKTFAWLIIQNRVWTSNRLATRGWPNG---SICPLCRHRQETAIHL 282

Query: 179 LFSCTFSLSVWQGCLHWLGCSFIQPS-----SARDHLSHFRFGINKLQQRLALSIWLAVI 233
           L  C ++  +W     W  C  + PS     S                ++   ++ L V 
Sbjct: 283 LAECRYTRRIWGAIAEWTACEQLNPSLWHQASTVSEWWEATANTKDAPKKALRTLTLLVA 342

Query: 234 WSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMKGFS 275
           W +W  RN   F+    ++ S+L  +K  +  W+ A ++  S
Sbjct: 343 WEIWNERNRRTFQQKELSMGSLLAKIKEEAKSWSLAGVRDLS 384


>UniRef100_Q65WR1 Putative polyprotein [Oryza sativa]
          Length = 1023

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 71/284 (25%), Positives = 116/284 (40%), Gaps = 23/284 (8%)

Query: 1    TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTL---GSWEHGRWHWKF 56
            TKI +  G+ T FW   W+     +     +Y +S+ +   +       SW H       
Sbjct: 741  TKITVGDGNTTRFWDSAWINGRRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHDL---TL 797

Query: 57   LWRRPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPD 116
                 +    L+    L +A+  V L    PD  VW  ++ G Y+ +SAYH  Q    P+
Sbjct: 798  DAGSSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYH-AQCLGAPN 856

Query: 117  TDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGF 176
            T+   + IW  +AP   K  AW ++ +R  + + L  R    +     C LC    ET  
Sbjct: 857  TNFNSL-IWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNN---GHCPLCRCDTETAL 912

Query: 177  HLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF--------GINKLQQRLALSI 228
            HL+  C ++  +W+    W G   ++P+   +  S  ++        GI K   R   S+
Sbjct: 913  HLVAMCRYTKRIWRLVATWAGYQQLEPAQWEEARSVHQWWESLANTPGIPKKGLR---SL 969

Query: 229  WLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
             L V+W +W  RN  +F         +L  +K  +  W  A  K
Sbjct: 970  ILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAK 1013


>UniRef100_Q7XT18 OSJNBb0050O03.4 protein [Oryza sativa]
          Length = 1199

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 75/282 (26%), Positives = 112/282 (39%), Gaps = 17/282 (6%)

Query: 3    ILKSGDVTDFWHDDWLGTGCLRGAFYRLYNL--SRQKWNCVNTLGSWEHGRWHWKFLWRR 60
            IL  G  T FW D W+    +      L +    R + +C    G   +    W    R 
Sbjct: 905  ILGDGQSTLFWTDRWIDGRSIASIAPDLLHAVPPRFRGSCTVAAGLANNS---WVGDIRG 961

Query: 61   PLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYH--FLQEPTLPDTD 118
             L    +     + DA+   QL+ G  D  VW  +    YS  SAY   FL + +    +
Sbjct: 962  ALTVPVISQFLLVWDAVLHTQLSPGAEDHLVWRWTGDQCYSARSAYQAFFLGQHSFACAN 1021

Query: 119  EALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHL 178
                 +WH   P+  K F W     R  + + L KR + +  A   CA     +ET  H+
Sbjct: 1022 ----LLWHVKGPAKCKFFLWFAFQQRCWTADLLQKRGIDSHSAGPFCA---QELETANHI 1074

Query: 179  LFSCTFSLSVWQGCLHWLGCSFIQP---SSARDHLSHFRFGINKLQQRLALSIWLAVIWS 235
            L  C F+  VW   L   G + + P   S  +D  S  R  + +       S+ L V W 
Sbjct: 1075 LIDCVFTRQVWLRVLSPPGWAALSPPRGSWLQDWWSSSRVCLPEHLHSGFDSLVLLVSWQ 1134

Query: 236  VWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMKGFSYS 277
            +W  RN  VF    A++  VLE ++     W+ A++  F  S
Sbjct: 1135 LWKERNSKVFDSALASVVVVLESIRSEGQLWSLASVTFFGIS 1176


>UniRef100_Q84Q64 Hypothetical protein OSJNBa0071M09.16 [Oryza sativa]
          Length = 1143

 Score = 73.6 bits (179), Expect = 6e-12
 Identities = 71/284 (25%), Positives = 115/284 (40%), Gaps = 23/284 (8%)

Query: 1    TKI-LKSGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTL---GSWEHGRWHWKF 56
            TKI +  G+ T FW   W+     +     +Y +S+ +   +       SW H       
Sbjct: 861  TKITVGDGNTTRFWDSAWINGQRPKDLMPLVYEISKNRKKSLRQGKEDDSWVHDL---TL 917

Query: 57   LWRRPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPD 116
                 +    L+    L +A+  V L    PD  VW  ++ G Y+ +SAYH  Q    P+
Sbjct: 918  DAGSSITINLLDQLVRLWEAVRNVHLDSEEPDQIVWKFTSSGHYTASSAYH-AQCLGAPN 976

Query: 117  TDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGF 176
            T+   + IW  +AP   K  AW ++ +R  + + L  R    +     C LC    ET  
Sbjct: 977  TNFNSL-IWKVWAPGKCKFHAWLIIQNRVWTSDRLATRGWRNN---GHCPLCRCDTETAL 1032

Query: 177  HLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF--------GINKLQQRLALSI 228
            HL+  C ++  +W+    W G    +P+   +  S  ++        GI K   R   S+
Sbjct: 1033 HLVAMCRYTKRIWRLVATWAGYQQFEPAQWEEARSVHQWWESLANTPGIPKKGLR---SL 1089

Query: 229  WLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
             L V+W +W  RN  +F         +L  +K  +  W  A  K
Sbjct: 1090 ILLVVWEIWKERNRRIFDHKEMATGVLLAKIKEEASLWALAGAK 1133


>UniRef100_Q9LH23 Similar to Arabidopsis thaliana low temperature and salt responsive
           protein LTI6B [Oryza sativa]
          Length = 537

 Score = 73.6 bits (179), Expect = 6e-12
 Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 9/184 (4%)

Query: 6   SGDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWRRPLVGR 65
           +G+  +FWHD WL   C +      +NL+++K   V T    E     W   +R+     
Sbjct: 96  NGEKINFWHDKWLQNTCPKDIAPLCFNLAKRKQRSVKT----ELTNNSWLLSFRQITTIE 151

Query: 66  ELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDEALVSIW 125
           E+     L   L  VQL     D   W  +  G YS NSAY F  + +    D    SIW
Sbjct: 152 EISDLVQLGGMLQNVQLLPQTNDDITWNLNESGSYSANSAYLFQFQGSFSSID--FHSIW 209

Query: 126 HSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFS 185
              A   ++ F W +L  +  + +NLL+R    +     C+LC +  E   HL   C F 
Sbjct: 210 RCPAEPKMRFFGWLILHQKTLTAQNLLRRHWPCNWI---CSLCGEAFEDTNHLFNVCPFF 266

Query: 186 LSVW 189
             VW
Sbjct: 267 RKVW 270


>UniRef100_Q8S7Y0 Putative retroelement [Oryza sativa]
          Length = 335

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 56/187 (29%), Positives = 82/187 (42%), Gaps = 12/187 (6%)

Query: 78  GTVQLTKGVPDAWVWMPSNVGIYSVNSAYH--FLQEPTLPDTDEALVSIWHSFAPSNVKG 135
           G  QL+ GV D  VW  ++   YS  SAY   F  + +    D     +WH+  P+  K 
Sbjct: 150 GQCQLSPGVRDRLVWCWTSDQRYSARSAYQAFFFGQHSFACAD----LLWHAKGPAKCKF 205

Query: 136 FAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHW 195
           F W     R  + + LLKR + +  A      C   +ET  H+L  C F+  VW   L  
Sbjct: 206 FLWFAFQRRCWTADLLLKRGLDSHSASP---FCGQELETANHILLDCIFARQVWLRVLSP 262

Query: 196 LGCSFIQP---SSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLARNEVVFRGGAANI 252
           LG + + P   S  +D     R G+    +    S+ L V W +W  RN  VF    +++
Sbjct: 263 LGWTTLSPPRGSCLQDWWPSSRVGLPGHLRASFDSMVLLVSWQLWKERNSRVFDSALSSV 322

Query: 253 YSVLELV 259
             VLE +
Sbjct: 323 SEVLESI 329


>UniRef100_Q5SMW3 Cyst nematode resistance protein-like [Oryza sativa]
          Length = 185

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 14/192 (7%)

Query: 97  VGIYSVNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQV 156
           +G Y+  SAY+     T       L  IW ++AP   K FAW ++ +R  + + L  R  
Sbjct: 1   MGEYTTASAYNAQLLGTTATNFNRL--IWKAWAPHKCKTFAWLIIQNRVWTSDKLATRGW 58

Query: 157 ITSLADAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRF- 215
                 + C LC    ET  HLL +C ++  VW     W+ C  + PS  R   +   + 
Sbjct: 59  PNG---SICPLCRRTQETALHLLAACRYTRRVWAALAEWVTCEQLNPSQWRQTSTVLDWW 115

Query: 216 ----GINKLQQRLALSIWLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANM 271
                I +  ++   ++ L V W +W  RN   F+    +  S+L  +K  +  W  A  
Sbjct: 116 EATANIQETPKKTLRTLMLLVAWKIWNERNRRTFQQKELSATSLLAKIKEEAKTWVLAG- 174

Query: 272 KGFSYSSSDWFS 283
              + S + W S
Sbjct: 175 ---AISLNSWLS 183


>UniRef100_Q7XMF6 OSJNBa0061G20.3 protein [Oryza sativa]
          Length = 1463

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 62/239 (25%), Positives = 95/239 (38%), Gaps = 20/239 (8%)

Query: 51   RWHWKFLWR---RPLVGREL---EWEKGLLDAL---GTVQLTKGVPDAWVWMPSNVGIYS 101
            RW W F W    +P VG      E ++ +  A        L +GV D   W  +N G Y+
Sbjct: 1227 RWLW-FEWECPDKPWVGTTPPCDELDEQIFAAATKDNETNLEEGVEDTITWRWTNTGKYT 1285

Query: 102  VNSAYHFLQEPTLPDTDEALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLA 161
              SAY  L +    +   A   IW ++APS  K FAW VL +R  + + L  RQ   +  
Sbjct: 1286 AKSAY--LAQFAGREDSRAATLIWKTWAPSKCKKFAWLVLQNRIWTSDRLQLRQWPNNYF 1343

Query: 162  DAQCALCNDYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQP-----SSARDHLSHFRFG 216
               C LC   +E   HL   C F+  +W   +  +  +   P      S  D        
Sbjct: 1344 ---CQLCYRNLEMAQHLFKDCPFTREIWDKIMARMNHNQPFPVHNTDESLVDWWESRTKQ 1400

Query: 217  INKLQQRLALSIWLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMKGFS 275
             +K Q +   S+ + + W +W  RN  VF+     I  +   +    + W+    K  +
Sbjct: 1401 QSKCQSKGMQSLHILLSWEIWCERNRRVFKDKELQIPQLTARIMDEIYTWSACGAKNLA 1459


>UniRef100_Q947X7 Hypothetical protein OSJNBa0067N01.20 [Oryza sativa]
          Length = 387

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 71/247 (28%), Positives = 104/247 (41%), Gaps = 19/247 (7%)

Query: 1   TKILKS-GDVTDFWHDDWLGTGCLRGAFYRLYNLSRQKWNCVNTLGSWEHGRWHWKFLWR 59
           TK+L   G   +FWHD WL  G L   F  LY  +  K NC+  L S  H  +   F+ R
Sbjct: 113 TKMLPGDGRHINFWHDVWLD-GQLSAKFQALYTHT-VKLNCL--LSSVLHEDFRCFFVPR 168

Query: 60  RPLVGRELEWEKGLLDALGTVQLTKGVPDAWVWMPSNVGIYSVNSAYHFLQEPTLPDTDE 119
                ++   +   L  L  V L+    +    + +  G+ S +  Y    E    +T  
Sbjct: 169 ITPTAQQQMMQLQYL--LQNVTLSTEPDEIVCNLKTKNGLISSSELYR--SEMATFETWP 224

Query: 120 ALVSIWHSFAPSNVKGFAWRVLLDRFASRENLLKRQVITSLADAQCALCNDYVETGFHLL 179
              +IW S AP  VK FAW +  +R  +R NL K+   T L    C LCN  +E  +H+ 
Sbjct: 225 PWSAIWRSAAPPRVKFFAWLMSKNRLPTRVNLHKK---TILPTPTCELCNANLEDTYHIF 281

Query: 180 FSCTFSLSVWQGCLHWLGCSFIQPSSARDHLSHFRFGINKLQQRLALSIWLAVIWSVWLA 239
             C  + + W           I   S+   L +       L   L+ + +L   W +W  
Sbjct: 282 LRCPMAAAFWN------MIQIIPEISSLSDLHNLELS-GPLPTFLSSTFFLLCCWRLWNH 334

Query: 240 RNEVVFR 246
           RNEVVF+
Sbjct: 335 RNEVVFQ 341


>UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor]
          Length = 1323

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 37/110 (33%), Positives = 53/110 (47%), Gaps = 2/110 (1%)

Query: 165  CALCNDYVETGFHLLFSCTFSLSVWQGCLHWLGCSFIQPSS--ARDHLSHFRFGINKLQQ 222
            CALC   +ET  HL F C +S  VWQ    W  C  +QP+S   R  L           +
Sbjct: 1201 CALCERNLETAHHLFFECPYSRLVWQAVSSWSSCPSLQPASWEDRSRLEDCFSQTLTTGE 1260

Query: 223  RLALSIWLAVIWSVWLARNEVVFRGGAANIYSVLELVKRRSWQWNKANMK 272
            + A ++ +  +WS+W  RN VVFR       S++  +K  + QW+ A  K
Sbjct: 1261 KKAHTLAILTLWSIWNRRNAVVFREDRKTTISLVVEIKDMARQWSLAGCK 1310


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.325    0.138    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,042,877
Number of Sequences: 2790947
Number of extensions: 22904438
Number of successful extensions: 66178
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 65802
Number of HSP's gapped (non-prelim): 258
length of query: 291
length of database: 848,049,833
effective HSP length: 126
effective length of query: 165
effective length of database: 496,390,511
effective search space: 81904434315
effective search space used: 81904434315
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 74 (33.1 bits)