BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0301a.2
(80 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9B1K6 Protein ycf2 [Lotus japonicus] 91 6e-18
UniRef100_Q6YSK2 Hypothetical protein orf100a [Brassica napus] 85 4e-16
UniRef100_P09976 Protein ycf2 [Nicotiana tabacum] 82 3e-15
UniRef100_P08973 Protein ycf2 [Spinacia oleracea] 82 3e-15
UniRef100_Q9MEF2 Protein ycf2 [Oenothera hookeri] 82 3e-15
UniRef100_Q7Y667 Protein ycf2 [Calycanthus fertilis var. ferax] 82 3e-15
UniRef100_Q8S8U1 Protein ycf2 [Atropa belladonna] 82 3e-15
UniRef100_Q8S8V2 Protein ycf2 [Atropa belladonna] 82 3e-15
UniRef100_P56786 Protein ycf2 [Arabidopsis thaliana] 82 3e-15
UniRef100_Q68RU4 Ycf2 protein [Panax ginseng] 81 7e-15
UniRef100_P61241 Protein ycf2 [Amborella trichopoda] 80 1e-14
UniRef100_Q6EVY7 Ycf2 protein [Nymphaea alba] 75 3e-13
UniRef100_P32033 Protein ycf2 [Cuscuta reflexa] 75 3e-13
UniRef100_P15821 Protein ycf2 [Vicia faba] 75 5e-13
UniRef100_Q32836 Protein ycf2 [Pelargonium hortorum] 70 1e-11
UniRef100_P30072 Protein ycf2 [Epifagus virginiana] 69 3e-11
UniRef100_P31569 Protein ycf2 [Oenothera villaricae] 64 9e-10
UniRef100_P31568 Protein ycf2 [Oenothera picensis] 64 9e-10
UniRef100_P41653 Protein ycf2 [Pinus thunbergii] 63 2e-09
UniRef100_Q85WV5 Protein ycf2 [Pinus koraiensis] 58 5e-08
>UniRef100_Q9B1K6 Protein ycf2 [Lotus japonicus]
Length = 2298
Score = 91.3 bits (225), Expect = 6e-18
Identities = 44/46 (95%), Positives = 44/46 (95%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLIHRQRWLR NNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD
Sbjct: 2224 FELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 2269
>UniRef100_Q6YSK2 Hypothetical protein orf100a [Brassica napus]
Length = 100
Score = 85.1 bits (209), Expect = 4e-16
Identities = 41/46 (89%), Positives = 43/46 (93%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI RQRWLR N+SLSNGFFRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 33 FELLIQRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLLD 78
>UniRef100_P09976 Protein ycf2 [Nicotiana tabacum]
Length = 2280
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2213 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2258
>UniRef100_P08973 Protein ycf2 [Spinacia oleracea]
Length = 2131
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2048 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2093
>UniRef100_Q9MEF2 Protein ycf2 [Oenothera hookeri]
Length = 2280
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2213 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2258
>UniRef100_Q7Y667 Protein ycf2 [Calycanthus fertilis var. ferax]
Length = 2287
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 42/46 (90%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLIHRQRWLR N+SLSNG FRSNT SESYQYLSN+FLSNGTLLD
Sbjct: 2211 FELLIHRQRWLRTNSSLSNGSFRSNTPSESYQYLSNLFLSNGTLLD 2256
>UniRef100_Q8S8U1 Protein ycf2 [Atropa belladonna]
Length = 2291
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2224 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2269
>UniRef100_Q8S8V2 Protein ycf2 [Atropa belladonna]
Length = 2291
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/46 (86%), Positives = 43/46 (92%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2224 FELLINRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2269
>UniRef100_P56786 Protein ycf2 [Arabidopsis thaliana]
Length = 2294
Score = 82.0 bits (201), Expect = 3e-15
Identities = 39/46 (84%), Positives = 42/46 (90%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI RQRWLR N+SLSNGFFRSNT SESYQYLSN+F+SNGTLLD
Sbjct: 2227 FELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLD 2272
>UniRef100_Q68RU4 Ycf2 protein [Panax ginseng]
Length = 2110
Score = 80.9 bits (198), Expect = 7e-15
Identities = 39/46 (84%), Positives = 42/46 (90%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRW R N+SLSNG FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 2027 FELLINRQRWFRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLD 2072
>UniRef100_P61241 Protein ycf2 [Amborella trichopoda]
Length = 2304
Score = 80.1 bits (196), Expect = 1e-14
Identities = 39/46 (84%), Positives = 41/46 (88%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLIHRQRWL N+SLSNG FRSNT SESYQYLSN+FLSNGTLLD
Sbjct: 2228 FELLIHRQRWLSTNSSLSNGSFRSNTPSESYQYLSNLFLSNGTLLD 2273
>UniRef100_Q6EVY7 Ycf2 protein [Nymphaea alba]
Length = 2253
Score = 75.5 bits (184), Expect = 3e-13
Identities = 41/49 (83%), Positives = 43/49 (87%), Gaps = 3/49 (6%)
Query: 1 FLLLIHRQRWLRPN--NSLSNGFFRSNTLSESYQYLSNMFLS-NGTLLD 46
F LLIHRQRWLR N +SLSNG FRSNTLSESYQYLSN+FLS NGTLLD
Sbjct: 2174 FELLIHRQRWLRTNTNSSLSNGSFRSNTLSESYQYLSNLFLSNNGTLLD 2222
>UniRef100_P32033 Protein ycf2 [Cuscuta reflexa]
Length = 740
Score = 75.5 bits (184), Expect = 3e-13
Identities = 38/46 (82%), Positives = 40/46 (86%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LIHRQR LR N+SLSN FRSNTLSESYQYLSN+FLSNGTLLD
Sbjct: 673 FEFLIHRQRCLRTNSSLSNRSFRSNTLSESYQYLSNLFLSNGTLLD 718
>UniRef100_P15821 Protein ycf2 [Vicia faba]
Length = 121
Score = 74.7 bits (182), Expect = 5e-13
Identities = 36/45 (80%), Positives = 39/45 (86%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLL 45
F LLI RQRW R N+S+SN FFRSNTL ESYQYLSN+FLSNGTLL
Sbjct: 49 FKLLIDRQRWFRTNSSVSNEFFRSNTLYESYQYLSNLFLSNGTLL 93
>UniRef100_Q32836 Protein ycf2 [Pelargonium hortorum]
Length = 2109
Score = 70.1 bits (170), Expect = 1e-11
Identities = 34/48 (70%), Positives = 40/48 (82%), Gaps = 2/48 (4%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFF--RSNTLSESYQYLSNMFLSNGTLLD 46
F LIHR+RWLR N+SLSNGFF ++ TL ESYQYLSN+FLSNG L+D
Sbjct: 2020 FEFLIHRERWLRTNSSLSNGFFCSKTQTLFESYQYLSNLFLSNGRLVD 2067
>UniRef100_P30072 Protein ycf2 [Epifagus virginiana]
Length = 2216
Score = 68.9 bits (167), Expect = 3e-11
Identities = 36/48 (75%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
Query: 1 FLLLIHRQRWLRPNNSLS--NGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LLI+RQRWLR +SLS NG FRSNTL ESYQYLS +FLSNGTL D
Sbjct: 2150 FELLINRQRWLRTKSSLSKSNGSFRSNTLFESYQYLSTLFLSNGTLFD 2197
>UniRef100_P31569 Protein ycf2 [Oenothera villaricae]
Length = 630
Score = 63.9 bits (154), Expect = 9e-10
Identities = 34/46 (73%), Positives = 36/46 (77%), Gaps = 2/46 (4%)
Query: 3 LLIHRQRWLRPNNSLS--NGFFRSNTLSESYQYLSNMFLSNGTLLD 46
LL+ RQRWL SLS NGFFRSNT SESYQYLSN+FLSN LLD
Sbjct: 571 LLLDRQRWLITKRSLSKSNGFFRSNTPSESYQYLSNLFLSNRRLLD 616
>UniRef100_P31568 Protein ycf2 [Oenothera picensis]
Length = 721
Score = 63.9 bits (154), Expect = 9e-10
Identities = 34/46 (73%), Positives = 36/46 (77%), Gaps = 2/46 (4%)
Query: 3 LLIHRQRWLRPNNSLS--NGFFRSNTLSESYQYLSNMFLSNGTLLD 46
LL+ RQRWL SLS NGFFRSNT SESYQYLSN+FLSN LLD
Sbjct: 662 LLLDRQRWLITKRSLSKSNGFFRSNTPSESYQYLSNLFLSNRRLLD 707
>UniRef100_P41653 Protein ycf2 [Pinus thunbergii]
Length = 2054
Score = 62.8 bits (151), Expect = 2e-09
Identities = 35/56 (62%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 1 FLLLIHRQRWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLDNTKMK*IIEN 56
F LIHRQRWL N LSN F NTL ESYQYLSN+FLSN LLD K ++EN
Sbjct: 1973 FQSLIHRQRWLGTNRLLSNESFLYNTLFESYQYLSNLFLSNRMLLDQI-TKTLLEN 2027
>UniRef100_Q85WV5 Protein ycf2 [Pinus koraiensis]
Length = 1320
Score = 58.2 bits (139), Expect = 5e-08
Identities = 32/47 (68%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 1 FLLLIHRQ-RWLRPNNSLSNGFFRSNTLSESYQYLSNMFLSNGTLLD 46
F LIHRQ RWL N+ LSN F NTL ESYQYLSN+FLSN LLD
Sbjct: 1238 FQSLIHRQKRWLGTNSLLSNESFLYNTLFESYQYLSNLFLSNRVLLD 1284
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.350 0.154 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,340,147
Number of Sequences: 2790947
Number of extensions: 3200551
Number of successful extensions: 16055
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16019
Number of HSP's gapped (non-prelim): 31
length of query: 80
length of database: 848,049,833
effective HSP length: 56
effective length of query: 24
effective length of database: 691,756,801
effective search space: 16602163224
effective search space used: 16602163224
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0301a.2