BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0299.13
(259 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9XFR6 SF2/ASF-like splicing modulator Srp30, variant ... 340 3e-92
UniRef100_Q64HC3 ASF/SF2-like pre-mRNA splicing factor SRP32 [Ze... 337 1e-91
UniRef100_Q64HC2 ASF/SF2-like pre-mRNA splicing factor SRP32' [Z... 337 1e-91
UniRef100_Q9XFR5 SF2/ASF-like splicing modulator Srp30 [Arabidop... 337 2e-91
UniRef100_Q8L7P1 SF2/ASF-like splicing modulator Srp30, putative... 332 4e-90
UniRef100_O22315-2 Splice isoform 2 of O22315 [Arabidopsis thali... 332 4e-90
UniRef100_O22315 Pre-mRNA splicing factor SF2 [Arabidopsis thali... 332 4e-90
UniRef100_Q9SPI5 Splicing factor SR1C [Arabidopsis thaliana] 331 1e-89
UniRef100_Q9SPI2 Splicing factor SR1B [Arabidopsis thaliana] 331 1e-89
UniRef100_Q9SPI1 Splicing factor SR1 [Arabidopsis thaliana] 331 1e-89
UniRef100_O80496 T12M4.19 protein [Arabidopsis thaliana] 331 1e-89
UniRef100_Q64HC0 ASF/SF2-like pre-mRNA splicing factor SRP30 [Ze... 331 1e-89
UniRef100_Q64HB9 ASF/SF2-like pre-mRNA splicing factor SRP30' [Z... 330 2e-89
UniRef100_Q7XI72 Putative pre-mRNA splicing factor SF2 [Oryza sa... 329 5e-89
UniRef100_Q64HB7 ASF/SF2-like pre-mRNA splicing factor SRP31 [Ze... 327 2e-88
UniRef100_Q64HB5 ASF/SF2-like pre-mRNA splicing factor SRP31' [Z... 327 2e-88
UniRef100_Q64HB6 ASF/SF2-like pre-mRNA splicing factor SRP31''' ... 325 7e-88
UniRef100_Q64HB8 ASF/SF2-like pre-mRNA splicing factor SRP31'' [... 320 3e-86
UniRef100_Q9CA06 Putative splicing factor; 53460-55514 [Arabidop... 298 7e-80
UniRef100_Q9SPI3 Splicing factor SR1D [Arabidopsis thaliana] 298 1e-79
>UniRef100_Q9XFR6 SF2/ASF-like splicing modulator Srp30, variant 1 [Arabidopsis
thaliana]
Length = 256
Score = 340 bits (871), Expect = 3e-92
Identities = 190/261 (72%), Positives = 210/261 (79%), Gaps = 14/261 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGYDFDG RLRVE+AHGGR S SVDRYSS S+SR SRRSDYRVLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS--SYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVREYD-RDYSRSPSRDSRRSYSRSISRSP---YLSRSRSRS--RSYSGRSISLSPTA 234
YIRVREY+ R SRSP DS+ SRS SR P Y S+SRS S RS S RS LS
Sbjct: 179 YIRVREYESRSVSRSPD-DSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLS--- 234
Query: 235 KRSRRLL-SLSRCGLLRGSGN 254
RSR L S+SR G L +G+
Sbjct: 235 -RSRSLYSSVSRSGSLLRAGD 254
>UniRef100_Q64HC3 ASF/SF2-like pre-mRNA splicing factor SRP32 [Zea mays]
Length = 285
Score = 337 bits (865), Expect = 1e-91
Identities = 175/242 (72%), Positives = 195/242 (80%), Gaps = 5/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLPGDIR REVED+FYK+G IVDIDLK+PPRPPGYAFV+FED RDAE+
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEE 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSR-GASRRSDYRVLVTGLP 119
AI RDGY+FDG RLRVE AHGGRG++SS DR S + GG +R G SR S+YRVLVTGLP
Sbjct: 61 AIAGRDGYNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGARRGVSRHSEYRVLVTGLP 120
Query: 120 PSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSR 179
SASWQDLKDHMRKAGDVCFS+V+RE GG GIVDYTNYDDMKYA++KLDD+EFRNAF R
Sbjct: 121 SSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGR 180
Query: 180 AYIRVREYD----RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAK 235
AYIRV+EY+ R YSRS S S SRS S+SP RS SRSRS S S S SP+
Sbjct: 181 AYIRVKEYNGKRGRSYSRSRSPSRSYSKSRSPSKSPRTRRSSSRSRSRSVSSRSRSPSKG 240
Query: 236 RS 237
RS
Sbjct: 241 RS 242
>UniRef100_Q64HC2 ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays]
Length = 257
Score = 337 bits (865), Expect = 1e-91
Identities = 175/242 (72%), Positives = 195/242 (80%), Gaps = 5/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLPGDIR REVED+FYK+G IVDIDLK+PPRPPGYAFV+FED RDAE+
Sbjct: 1 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGKIVDIDLKVPPRPPGYAFVEFEDPRDAEE 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSR-GASRRSDYRVLVTGLP 119
AI RDGY+FDG RLRVE AHGGRG++SS DR S + GG +R G SR S+YRVLVTGLP
Sbjct: 61 AIAGRDGYNFDGHRLRVEAAHGGRGNASSHDRSSGFGGGGGARRGVSRHSEYRVLVTGLP 120
Query: 120 PSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSR 179
SASWQDLKDHMRKAGDVCFS+V+RE GG GIVDYTNYDDMKYA++KLDD+EFRNAF R
Sbjct: 121 SSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGR 180
Query: 180 AYIRVREYD----RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAK 235
AYIRV+EY+ R YSRS S S SRS S+SP RS SRSRS S S S SP+
Sbjct: 181 AYIRVKEYNGKRGRSYSRSRSPSRSYSKSRSPSKSPRTRRSSSRSRSRSVSSRSRSPSKG 240
Query: 236 RS 237
RS
Sbjct: 241 RS 242
>UniRef100_Q9XFR5 SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana]
Length = 268
Score = 337 bits (864), Expect = 2e-91
Identities = 182/253 (71%), Positives = 200/253 (78%), Gaps = 12/253 (4%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGYDFDG RLRVE+AHGGR S SVDRYSS S+SR SRRSDYRVLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS--SYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRR 239
YIRVREY+ R SRSP DS+ SRS SR P S SYS +S S+SP S R
Sbjct: 179 YIRVREYESRSVSRSPD-DSKSYRSRSRSRGP--------SCSYSSKSRSVSPARSISPR 229
Query: 240 LLSLSRCGLLRGS 252
LSR L S
Sbjct: 230 SRPLSRSRSLYSS 242
>UniRef100_Q8L7P1 SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis
thaliana]
Length = 285
Score = 332 bits (852), Expect = 4e-90
Identities = 179/250 (71%), Positives = 199/250 (79%), Gaps = 18/250 (7%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG----------SSSRGASRRSD 110
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG SRRS+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 118
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD
Sbjct: 119 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 178
Query: 171 SEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS RS S
Sbjct: 179 TEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS---RSRS 233
Query: 230 LSPTAKRSRR 239
SP AK SRR
Sbjct: 234 RSPKAKSSRR 243
>UniRef100_O22315-2 Splice isoform 2 of O22315 [Arabidopsis thaliana]
Length = 272
Score = 332 bits (852), Expect = 4e-90
Identities = 179/250 (71%), Positives = 199/250 (79%), Gaps = 18/250 (7%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG----------SSSRGASRRSD 110
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG SRRS+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 118
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD
Sbjct: 119 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 178
Query: 171 SEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS RS S
Sbjct: 179 TEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS---RSRS 233
Query: 230 LSPTAKRSRR 239
SP AK SRR
Sbjct: 234 RSPKAKSSRR 243
>UniRef100_O22315 Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]
Length = 303
Score = 332 bits (852), Expect = 4e-90
Identities = 179/250 (71%), Positives = 199/250 (79%), Gaps = 18/250 (7%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG----------SSSRGASRRSD 110
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG SRRS+
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGGSRGPSRRSE 118
Query: 111 YRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDD 170
+RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD
Sbjct: 119 FRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDD 178
Query: 171 SEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSIS 229
+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS RS S
Sbjct: 179 TEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS---RSRS 233
Query: 230 LSPTAKRSRR 239
SP AK SRR
Sbjct: 234 RSPKAKSSRR 243
>UniRef100_Q9SPI5 Splicing factor SR1C [Arabidopsis thaliana]
Length = 276
Score = 331 bits (848), Expect = 1e-89
Identities = 179/254 (70%), Positives = 199/254 (77%), Gaps = 22/254 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSG 225
KLDD+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS--- 233
Query: 226 RSISLSPTAKRSRR 239
RS S SP AK SRR
Sbjct: 234 RSRSRSPKAKSSRR 247
>UniRef100_Q9SPI2 Splicing factor SR1B [Arabidopsis thaliana]
Length = 289
Score = 331 bits (848), Expect = 1e-89
Identities = 179/254 (70%), Positives = 199/254 (77%), Gaps = 22/254 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSG 225
KLDD+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS--- 233
Query: 226 RSISLSPTAKRSRR 239
RS S SP AK SRR
Sbjct: 234 RSRSRSPKAKSSRR 247
>UniRef100_Q9SPI1 Splicing factor SR1 [Arabidopsis thaliana]
Length = 307
Score = 331 bits (848), Expect = 1e-89
Identities = 179/254 (70%), Positives = 199/254 (77%), Gaps = 22/254 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSG 225
KLDD+EFRNAFS Y+RVREYD R SRSPSR RSYS+S SRS S SRSRSRS
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRG--RSYSKSRSRSRGRSVSRSRSRS--- 233
Query: 226 RSISLSPTAKRSRR 239
RS S SP AK SRR
Sbjct: 234 RSRSRSPKAKSSRR 247
>UniRef100_O80496 T12M4.19 protein [Arabidopsis thaliana]
Length = 237
Score = 331 bits (848), Expect = 1e-89
Identities = 171/224 (76%), Positives = 188/224 (83%), Gaps = 4/224 (1%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGYDFDG RLRVE+AHGGR S SVDRYSS S+SR SRRSDYRVLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS--SYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVREYD-RDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSY 223
YIRVREY+ R SRSP DS+ SRS SR P S S RS+
Sbjct: 179 YIRVREYESRSVSRSPD-DSKSYRSRSRSRGPSCSYSSKSRRSF 221
>UniRef100_Q64HC0 ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays]
Length = 260
Score = 331 bits (848), Expect = 1e-89
Identities = 172/240 (71%), Positives = 191/240 (78%), Gaps = 14/240 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R+SRTIYVGNLPGDIR REVED+FYK+G I+DIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG+RLRVELAHGGRG S S DR SSYS G SRRSD+RV+VTGLP
Sbjct: 61 AIYGRDGYNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRG-GVSRRSDFRVMVTGLPS 119
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCFS V+RE G GIVDYTNYDDMKYA+RKLDDS+FRNAFSRA
Sbjct: 120 SASWQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQFRNAFSRA 179
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRRL 240
YIRVREYD +R RS S S SRSP SRSR S +S+S SP++ R L
Sbjct: 180 YIRVREYD-------ARSRSRSRSHSYSRSPSYSRSR------SPKSVSQSPSSVDERSL 226
>UniRef100_Q64HB9 ASF/SF2-like pre-mRNA splicing factor SRP30' [Zea mays]
Length = 241
Score = 330 bits (847), Expect = 2e-89
Identities = 173/247 (70%), Positives = 192/247 (77%), Gaps = 14/247 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R+SRTIYVGNLPGDIR REVED+FYK+G I+DIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRILDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG+RLRVELAHGGRG S S DR SSYS G SRRSD+RV+VTGLP
Sbjct: 61 AIYGRDGYNFDGYRLRVELAHGGRGQSYSYDRSSSYSSACRG-GVSRRSDFRVMVTGLPS 119
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCFS V+RE G GIVDYTNYDDMKYA+RKLDDS+FRNAFSRA
Sbjct: 120 SASWQDLKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQFRNAFSRA 179
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRRL 240
YIRVREYD +R RS S S SRSP SRSR S +S+S SP++ R
Sbjct: 180 YIRVREYD-------ARSRSRSRSHSYSRSPSYSRSR------SPKSVSQSPSSVDERFA 226
Query: 241 LSLSRCG 247
R G
Sbjct: 227 FVFPRFG 233
>UniRef100_Q7XI72 Putative pre-mRNA splicing factor SF2 [Oryza sativa]
Length = 362
Score = 329 bits (843), Expect = 5e-89
Identities = 176/249 (70%), Positives = 195/249 (77%), Gaps = 14/249 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SRTIYVGNLPGDIR REVED+FYK+G IVDIDLKIPPRPPG+AFV+FED RDAED
Sbjct: 67 MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFEDPRDAED 126
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AI RDGY+FDG RLRVELAHGGRG+SSS +++ GG G SR ++YRVLVTGLP
Sbjct: 127 AIRGRDGYNFDGNRLRVELAHGGRGNSSS---FNNSGGGGRRGGVSRHTEYRVLVTGLPS 183
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR AGDVC+S+V+RE GG GIVDYTNYDDMKYA+RKLDDSEF+NAFS+A
Sbjct: 184 SASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDYTNYDDMKYAIRKLDDSEFKNAFSKA 243
Query: 181 YIRVREYD----RDYSRSPSRDSRRSYSRSIS-------RSPYLSRSRSRSRSYSGRSIS 229
YIRV+EYD R YSRS SR RSYSRS S +S S SRSRSRS S RS S
Sbjct: 244 YIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPSKSPKGKSSRRSASRSRSRSASSRSRS 303
Query: 230 LSPTAKRSR 238
S SR
Sbjct: 304 ESKGRSPSR 312
>UniRef100_Q64HB7 ASF/SF2-like pre-mRNA splicing factor SRP31 [Zea mays]
Length = 276
Score = 327 bits (838), Expect = 2e-88
Identities = 171/242 (70%), Positives = 195/242 (79%), Gaps = 6/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
M+ R+ TIYVGNLPGDIR REV+D+FYK+G IV+IDLKIPPRPPG+AFV+FEDARDAED
Sbjct: 1 MTRRNGCTIYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG RLRVELAHGGRG+SS DR SSYS + RGAS+RSDYRV+VTGLP
Sbjct: 61 AIYGRDGYNFDGHRLRVELAHGGRGTSS-FDRSSSYSS-AGQRGASKRSDYRVMVTGLPS 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCF+ V+RE G GI DYTNY+DMK+A+RKLDDSEFRNAFSR
Sbjct: 119 SASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEFRNAFSRT 178
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSR----SRSRSYSGRSISLSPTAKR 236
Y+RVREYD SRS SR RS SRS S S SRSR S+SRS RS S S + +
Sbjct: 179 YVRVREYDARRSRSRSRGRNRSKSRSRSHSHSYSRSRSCSYSKSRSPRSRSASESKSPVK 238
Query: 237 SR 238
+R
Sbjct: 239 AR 240
>UniRef100_Q64HB5 ASF/SF2-like pre-mRNA splicing factor SRP31' [Zea mays]
Length = 253
Score = 327 bits (838), Expect = 2e-88
Identities = 171/242 (70%), Positives = 195/242 (79%), Gaps = 6/242 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
M+ R+ TIYVGNLPGDIR REV+D+FYK+G IV+IDLKIPPRPPG+AFV+FEDARDAED
Sbjct: 1 MTRRNGCTIYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG RLRVELAHGGRG+SS DR SSYS + RGAS+RSDYRV+VTGLP
Sbjct: 61 AIYGRDGYNFDGHRLRVELAHGGRGTSS-FDRSSSYSS-AGQRGASKRSDYRVMVTGLPS 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCF+ V+RE G GI DYTNY+DMK+A+RKLDDSEFRNAFSR
Sbjct: 119 SASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEFRNAFSRT 178
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSR----SRSRSYSGRSISLSPTAKR 236
Y+RVREYD SRS SR RS SRS S S SRSR S+SRS RS S S + +
Sbjct: 179 YVRVREYDARRSRSRSRGRNRSKSRSRSHSHSYSRSRSCSYSKSRSPRSRSASESKSPVK 238
Query: 237 SR 238
+R
Sbjct: 239 AR 240
>UniRef100_Q64HB6 ASF/SF2-like pre-mRNA splicing factor SRP31''' [Zea mays]
Length = 264
Score = 325 bits (833), Expect = 7e-88
Identities = 170/235 (72%), Positives = 191/235 (80%), Gaps = 6/235 (2%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
M+ R+ TIYVGNLPGDIR REV+D+FYK+G IV+IDLKIPPRPPG+AFV+FEDARDAED
Sbjct: 1 MTRRNGCTIYVGNLPGDIREREVDDLFYKYGRIVEIDLKIPPRPPGFAFVEFEDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP 120
AIY RDGY+FDG RLRVELAHGGRG+SS DR SSYS + RGAS+RSDYRV+VTGLP
Sbjct: 61 AIYGRDGYNFDGHRLRVELAHGGRGTSS-FDRSSSYSS-AGQRGASKRSDYRVMVTGLPS 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMR+AGDVCF+ V+RE G GI DYTNY+DMK+A+RKLDDSEFRNAFSR
Sbjct: 119 SASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSEFRNAFSRT 178
Query: 181 YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSR----SRSRSYSGRSISLS 231
Y+RVREYD SRS SR RS SRS S S SRSR S+SRS RS S S
Sbjct: 179 YVRVREYDARRSRSRSRGRNRSKSRSRSHSHSYSRSRSCSYSKSRSPRSRSASES 233
>UniRef100_Q64HB8 ASF/SF2-like pre-mRNA splicing factor SRP31'' [Zea mays]
Length = 284
Score = 320 bits (819), Expect = 3e-86
Identities = 171/250 (68%), Positives = 195/250 (77%), Gaps = 14/250 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYK--------FGPIVDIDLKIPPRPPGYAFVQF 52
M+ R+ TIYVGNLPGDIR REV+D+FYK +G IV+IDLKIPPRPPG+AFV+F
Sbjct: 1 MTRRNGCTIYVGNLPGDIREREVDDLFYKGRQCGLRMYGRIVEIDLKIPPRPPGFAFVEF 60
Query: 53 EDARDAEDAIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYR 112
EDARDAEDAIY RDGY+FDG RLRVELAHGGRG+SS DR SSYS + RGAS+RSDYR
Sbjct: 61 EDARDAEDAIYGRDGYNFDGHRLRVELAHGGRGTSS-FDRSSSYSS-AGQRGASKRSDYR 118
Query: 113 VLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSE 172
V+VTGLP SASWQDLKDHMR+AGDVCF+ V+RE G GI DYTNY+DMK+A+RKLDDSE
Sbjct: 119 VMVTGLPSSASWQDLKDHMRRAGDVCFTDVYREAGATIGIADYTNYEDMKHAIRKLDDSE 178
Query: 173 FRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSR----SRSRSYSGRSI 228
FRNAFSR Y+RVREYD SRS SR RS SRS S S SRSR S+SRS RS
Sbjct: 179 FRNAFSRTYVRVREYDARRSRSRSRGRNRSKSRSRSHSHSYSRSRSCSYSKSRSPRSRSA 238
Query: 229 SLSPTAKRSR 238
S S + ++R
Sbjct: 239 SESKSPVKAR 248
>UniRef100_Q9CA06 Putative splicing factor; 53460-55514 [Arabidopsis thaliana]
Length = 295
Score = 298 bits (764), Expect = 7e-80
Identities = 159/256 (62%), Positives = 183/256 (71%), Gaps = 13/256 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SR+IYVGNLPGDIR E+EDIFYK+G IVDI+LK+PPRPP Y FV+FE +RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGA------------SRR 108
AI RDGY+ DG RLRVELAHGGRG SSS DR Y GG S G SR
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSS-DRRGGYGGGGSGYGGGGGGGGSARFGVSRH 119
Query: 109 SDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKL 168
S++RV+V GLP SASWQDLKDHMRKAGDVCF++V R+ G G+VDYTNYDDMKYA+RKL
Sbjct: 120 SEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKL 179
Query: 169 DDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSI 228
DD+EFRN ++R +IRV++Y+ SRS S RS SRS SRS RS SRSRS S
Sbjct: 180 DDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKS 239
Query: 229 SLSPTAKRSRRLLSLS 244
+K RR LS S
Sbjct: 240 PRKDLSKSPRRSLSRS 255
>UniRef100_Q9SPI3 Splicing factor SR1D [Arabidopsis thaliana]
Length = 261
Score = 298 bits (762), Expect = 1e-79
Identities = 151/223 (67%), Positives = 172/223 (76%), Gaps = 19/223 (8%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGG--------------SSSRGAS 106
AI+ RDGYDFDG RLRVELAHGGR SS D S++GG SRG S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSD--DTRGSFNGGGRGGGRGRGDGRGDGGSRGPS 118
Query: 107 RRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALR 166
RRS++RVLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+
Sbjct: 119 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 178
Query: 167 KLDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISR 209
KLDD+EFRNAFS Y+RVREYD SR SR + + R
Sbjct: 179 KLDDTEFRNAFSNGYVRVREYD---SRKDSRRAEAGAGAEVPR 218
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,653,975
Number of Sequences: 2790947
Number of extensions: 18985576
Number of successful extensions: 96981
Number of sequences better than 10.0: 4193
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 2871
Number of HSP's that attempted gapping in prelim test: 68569
Number of HSP's gapped (non-prelim): 15103
length of query: 259
length of database: 848,049,833
effective HSP length: 125
effective length of query: 134
effective length of database: 499,181,458
effective search space: 66890315372
effective search space used: 66890315372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0299.13