BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0290.12
(143 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9M7I9 Stress enhanced protein 1 [Arabidopsis thaliana] 152 1e-36
UniRef100_O49486 Hypothetical protein AT4g34190 [Arabidopsis tha... 148 2e-35
UniRef100_Q9SWB0 Differentially expressed osmotic protein ODE1 [... 101 3e-21
UniRef100_Q8L574 Putative stress enhanced protein [Oryza sativa] 100 1e-20
UniRef100_Q5W9T0 Lhc-like protein Lhl4 [Chlamydomonas reinhardtii] 44 0.001
UniRef100_Q9SMB4 Photosystem II 22 kDa protein, chloroplast prec... 42 0.004
UniRef100_Q7NKN4 CAB/ELIP/HLIP-related protein [Gloeobacter viol... 41 0.005
UniRef100_P93169 Early light-induced protein [Glycine max] 40 0.014
UniRef100_Q7U491 Possible high light inducible protein [Synechoc... 39 0.019
UniRef100_P14895 High molecular mass early light-inducible prote... 39 0.019
UniRef100_P73563 CAB/ELIP/HLIP superfamily [Synechocystis sp.] 39 0.024
UniRef100_Q7VEA3 High light inducible protein hli4 [Prochlorococ... 39 0.032
UniRef100_Q943K1 Putative photosystem II subunit [Oryza sativa] 39 0.032
UniRef100_Q94EI1 Hypothetical protein [Arabidopsis thaliana] 38 0.041
UniRef100_P51355 Hypothetical 5.5 kDa protein ycf17 [Porphyra pu... 38 0.041
UniRef100_Q9FPP4 Photosystem II 22 kDa protein, chloroplast prec... 38 0.041
UniRef100_P54773 Photosystem II 22 kDa protein, chloroplast prec... 38 0.041
UniRef100_Q9XF91 Photosystem II 22 kDa protein, chloroplast prec... 38 0.041
UniRef100_P11432 Early light-induced protein, chloroplast precur... 38 0.041
UniRef100_Q44310 RNA polymerase sigma factor [Anabaena sp] 38 0.054
>UniRef100_Q9M7I9 Stress enhanced protein 1 [Arabidopsis thaliana]
Length = 146
Score = 152 bits (385), Expect = 1e-36
Identities = 89/147 (60%), Positives = 110/147 (74%), Gaps = 5/147 (3%)
Query: 1 MALATQTSASLSISFRDACVFPAAKYS---ATARFPLPNLVPSRASFATGTPLL-IRRSH 56
MAL+ Q SASL+ S ++ A + +T R +P L R++FA+G+PLL ++ S
Sbjct: 1 MALS-QVSASLAFSLPNSGALKLATITNPTSTCRVHVPQLAGIRSTFASGSPLLPLKLSM 59
Query: 57 GRKLACRAMPVSIRSEQSTKDGNGLDVWLGRLAMIGFAAGITVEVATGKGLLENFGVASP 116
R+ RA VSIRSEQST+ +GLD+WLGR AM+GFA ITVE++TGKGLLENFGVASP
Sbjct: 60 TRRGGNRAASVSIRSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLENFGVASP 119
Query: 117 LPTVALAVTALVGVLTAVFIFQSASKN 143
LPTVALAVTALVGVL AVFIFQS+SKN
Sbjct: 120 LPTVALAVTALVGVLAAVFIFQSSSKN 146
>UniRef100_O49486 Hypothetical protein AT4g34190 [Arabidopsis thaliana]
Length = 134
Score = 148 bits (374), Expect = 2e-35
Identities = 79/118 (66%), Positives = 96/118 (80%), Gaps = 1/118 (0%)
Query: 27 SATARFPLPNLVPSRASFATGTPLL-IRRSHGRKLACRAMPVSIRSEQSTKDGNGLDVWL 85
++T R +P L R++FA+G+PLL ++ S R+ RA VSIRSEQST+ +GLD+WL
Sbjct: 17 TSTCRVHVPQLAGIRSTFASGSPLLPLKLSMTRRGGNRAASVSIRSEQSTEGSSGLDIWL 76
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSASKN 143
GR AM+GFA ITVE++TGKGLLENFGVASPLPTVALAVTALVGVL AVFIFQS+SKN
Sbjct: 77 GRGAMVGFAVAITVEISTGKGLLENFGVASPLPTVALAVTALVGVLAAVFIFQSSSKN 134
>UniRef100_Q9SWB0 Differentially expressed osmotic protein ODE1 [Capsicum annuum]
Length = 60
Score = 101 bits (252), Expect = 3e-21
Identities = 50/59 (84%), Positives = 56/59 (94%)
Query: 85 LGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSASKN 143
+GR AM+GFAA I+VE+ATGKGLLENFG++ PLPTVALAVTALVGVLTAVFIFQSASKN
Sbjct: 2 IGRSAMVGFAAAISVEIATGKGLLENFGISGPLPTVALAVTALVGVLTAVFIFQSASKN 60
>UniRef100_Q8L574 Putative stress enhanced protein [Oryza sativa]
Length = 138
Score = 99.8 bits (247), Expect = 1e-20
Identities = 57/111 (51%), Positives = 72/111 (64%), Gaps = 12/111 (10%)
Query: 38 VPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQSTKDGNG-----LDVWLGRLAMIG 92
V S S A G+ + +RR R L ++R EQ K G G LDVWL R AM+G
Sbjct: 35 VTSACSAAPGSLVSMRRQKARSL-------TVRCEQGAKGGGGGGGGGLDVWLSRGAMLG 87
Query: 93 FAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSASKN 143
F A ITVE+ TGKG+L+N G+ SP+PTVALA+T +VGV TA IFQSAS++
Sbjct: 88 FVAAITVELTTGKGVLQNVGLTSPVPTVALALTGVVGVATAFLIFQSASQD 138
>UniRef100_Q5W9T0 Lhc-like protein Lhl4 [Chlamydomonas reinhardtii]
Length = 285
Score = 43.5 bits (101), Expect = 0.001
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLT 132
+ W+GR +M+GF + I VE ATGKG L G+ +P + A+ + G T
Sbjct: 60 ETWVGRWSMMGFVSSIVVEFATGKGTLAQVGLDAPSMPLLAAMCVIFGGAT 110
Score = 31.6 bits (70), Expect = 3.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 86 GRLAMIGFAAGITVEVATGKGLL 108
GR AM+GF A I VE TG+G++
Sbjct: 244 GRAAMLGFLAAILVEAGTGEGII 266
>UniRef100_Q9SMB4 Photosystem II 22 kDa protein, chloroplast precursor [Nicotiana
tabacum]
Length = 274
Score = 41.6 bits (96), Expect = 0.004
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 35 PNLVPSRASFATGTPLLIRRSHGRKLACRAMPVSIRSEQSTKDG-----NGL------DV 83
P+ S +S T T + + +S + A + +P + ++ +DG G+ ++
Sbjct: 43 PSASASASSHFTSTTVALFKSKAKAPAKKVVP---KPKEKVEDGIFGTSGGIGFTKQNEL 99
Query: 84 WLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 100 FVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 134
Score = 32.7 bits (73), Expect = 1.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSA 140
++++GRLA +G A I E+ TGKG L + +P + L + VF F +A
Sbjct: 204 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNI---VFFFVAA 259
>UniRef100_Q7NKN4 CAB/ELIP/HLIP-related protein [Gloeobacter violaceus]
Length = 52
Score = 41.2 bits (95), Expect = 0.005
Identities = 19/28 (67%), Positives = 23/28 (81%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFGV 113
GRLAMIGFAA + VE+ATGKG+L G+
Sbjct: 24 GRLAMIGFAAALVVELATGKGVLSFLGL 51
>UniRef100_P93169 Early light-induced protein [Glycine max]
Length = 192
Score = 39.7 bits (91), Expect = 0.014
Identities = 28/61 (45%), Positives = 38/61 (61%), Gaps = 5/61 (8%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLE---NFGVASPLPT-VALAVTALVGVLTAVFIFQSAS 141
GRLAMIGF A + VEVA G+G+LE N G+ L T V L + +L+ + V + +S S
Sbjct: 99 GRLAMIGFVAAMAVEVAIGQGVLEQISNGGIPWFLGTSVVLTLASLIPLFQGVSV-ESKS 157
Query: 142 K 142
K
Sbjct: 158 K 158
>UniRef100_Q7U491 Possible high light inducible protein [Synechococcus sp.]
Length = 46
Score = 39.3 bits (90), Expect = 0.019
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 79 NGLDVWLGRLAMIGFAAGITVEVATGKGLLENFGV 113
N + W GRLAM+GF G+ E+ TG+G+L G+
Sbjct: 11 NFAETWNGRLAMMGFVIGLGTELLTGQGILSQIGL 45
>UniRef100_P14895 High molecular mass early light-inducible protein HV58, chloroplast
precursor [Hordeum vulgare]
Length = 231
Score = 39.3 bits (90), Expect = 0.019
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSAS 141
GRLAM+GF A ++VE A G GLL+ G+ S LA + V + + + Q S
Sbjct: 134 GRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQS 189
>UniRef100_P73563 CAB/ELIP/HLIP superfamily [Synechocystis sp.]
Length = 70
Score = 38.9 bits (89), Expect = 0.024
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 84 WLGRLAMIGFAAGITVEVATGKGLLENFGV 113
W GRLAMIGF++ + +E+ +G+G+L FG+
Sbjct: 40 WNGRLAMIGFSSALILELVSGQGVLHFFGI 69
>UniRef100_Q7VEA3 High light inducible protein hli4 [Prochlorococcus marinus]
Length = 49
Score = 38.5 bits (88), Expect = 0.032
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 79 NGLDVWLGRLAMIGFAAGITVEVATGKGLLENFG 112
N ++W GRLAM+G G++ E+ TG+G+L G
Sbjct: 14 NYAEIWNGRLAMLGIVIGLSTELLTGQGILGQIG 47
>UniRef100_Q943K1 Putative photosystem II subunit [Oryza sativa]
Length = 268
Score = 38.5 bits (88), Expect = 0.032
Identities = 28/101 (27%), Positives = 48/101 (46%), Gaps = 15/101 (14%)
Query: 33 PLPNLVPSRASFATGTPLLIRR----SHGRKLACRAMPVSIRSEQSTKDG-----NGL-- 81
P LV S+ S + G + ++ + A A + + T+DG G+
Sbjct: 29 PFSRLVLSQPSSSLGRAVSVKTVALFGRSKTKAAPARKAEPKPKFKTEDGIFGTSGGIGF 88
Query: 82 ----DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AM+GFAA I E TGKG+L + + +P
Sbjct: 89 TKENELFVGRVAMLGFAASILGEAITGKGILAQLNLETGIP 129
Score = 34.7 bits (78), Expect = 0.46
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIFQSA 140
++++GRLA +G A I E+ TGKG L + + +P + L V VF F +A
Sbjct: 198 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNIETGVPINEIEPLVLFNV---VFFFIAA 253
>UniRef100_Q94EI1 Hypothetical protein [Arabidopsis thaliana]
Length = 265
Score = 38.1 bits (87), Expect = 0.041
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 90 ELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIP 126
Score = 34.3 bits (77), Expect = 0.60
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIF 137
++++GRLA +G A + E+ TGKG L + + +P + L+ V A F F
Sbjct: 194 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNV--AFFFF 247
>UniRef100_P51355 Hypothetical 5.5 kDa protein ycf17 [Porphyra purpurea]
Length = 48
Score = 38.1 bits (87), Expect = 0.041
Identities = 17/27 (62%), Positives = 20/27 (73%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLL 108
+ W GR AMIGF A I +E+ TGKGLL
Sbjct: 15 ETWNGRFAMIGFMAVIFIELVTGKGLL 41
>UniRef100_Q9FPP4 Photosystem II 22 kDa protein, chloroplast precursor [Solanum
sogarandinum]
Length = 276
Score = 38.1 bits (87), Expect = 0.041
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 136
Score = 31.6 bits (70), Expect = 3.9
Identities = 14/37 (37%), Positives = 22/37 (58%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GRLA +G A I E+ TGKG L + +P
Sbjct: 206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVP 242
>UniRef100_P54773 Photosystem II 22 kDa protein, chloroplast precursor [Lycopersicon
esculentum]
Length = 276
Score = 38.1 bits (87), Expect = 0.041
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 136
Score = 31.6 bits (70), Expect = 3.9
Identities = 14/37 (37%), Positives = 22/37 (58%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GRLA +G A I E+ TGKG L + +P
Sbjct: 206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVP 242
>UniRef100_Q9XF91 Photosystem II 22 kDa protein, chloroplast precursor [Arabidopsis
thaliana]
Length = 265
Score = 38.1 bits (87), Expect = 0.041
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLP 118
++++GR+AMIGFAA + E TGKG+L + + +P
Sbjct: 90 ELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIP 126
Score = 34.3 bits (77), Expect = 0.60
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGVASPLPTVALAVTALVGVLTAVFIF 137
++++GRLA +G A + E+ TGKG L + + +P + L+ V A F F
Sbjct: 194 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNV--AFFFF 247
>UniRef100_P11432 Early light-induced protein, chloroplast precursor [Pisum sativum]
Length = 196
Score = 38.1 bits (87), Expect = 0.041
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 86 GRLAMIGFAAGITVEVATGKGLLENF---GVASPLPT-VALAVTALVGVLTAVFIFQSAS 141
GRLAMIGF A + VE+A G+GL E GVA L T V L++ +L+ V + +S S
Sbjct: 103 GRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSV-ESKS 161
Query: 142 KN 143
K+
Sbjct: 162 KS 163
>UniRef100_Q44310 RNA polymerase sigma factor [Anabaena sp]
Length = 59
Score = 37.7 bits (86), Expect = 0.054
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 82 DVWLGRLAMIGFAAGITVEVATGKGLLENFGV 113
++W GRLAMIGF A +E+ +G+G L +G+
Sbjct: 27 EIWNGRLAMIGFLAATLIELFSGQGFLHFWGI 58
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.321 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,670,765
Number of Sequences: 2790947
Number of extensions: 7412031
Number of successful extensions: 18886
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 18770
Number of HSP's gapped (non-prelim): 146
length of query: 143
length of database: 848,049,833
effective HSP length: 119
effective length of query: 24
effective length of database: 515,927,140
effective search space: 12382251360
effective search space used: 12382251360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0290.12