BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0281b.2
(124 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_O23757 Reverse transcriptase [Beta vulgaris subsp. vul... 92 3e-18
UniRef100_Q84Q63 Putative reverse transcriptase [Oryza sativa] 61 5e-09
UniRef100_Q8L3X5 Putative reverse transcriptase [Oryza sativa] 59 3e-08
UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa] 57 1e-07
UniRef100_Q9ZQQ6 Putative non-LTR retroelement reverse transcrip... 56 2e-07
UniRef100_Q7XUD8 OSJNBa0088A01.7 protein [Oryza sativa] 56 2e-07
UniRef100_Q6UUR7 Putative reverse transcriptase [Oryza sativa] 55 3e-07
UniRef100_Q9AY65 Putative reverse transcriptase [Oryza sativa] 55 5e-07
UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa] 54 8e-07
UniRef100_Q7XSJ7 OSJNBb0078D11.8 protein [Oryza sativa] 53 1e-06
UniRef100_Q5VSW6 OSJNBa0009P12.10 protein [Oryza sativa] 53 2e-06
UniRef100_Q8LM65 Putative non-LTR retroelement reverse transcrip... 52 3e-06
UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa] 52 3e-06
UniRef100_Q7XKK3 OSJNBa0038O10.4 protein [Oryza sativa] 52 3e-06
UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor] 52 3e-06
UniRef100_Q7XPE7 OSJNBa0060N03.14 protein [Oryza sativa] 51 5e-06
UniRef100_Q5W642 Retrotransposon protein, putative, unclassified... 51 5e-06
UniRef100_Q8LSR5 Putative reverse transcriptase [Oryza sativa] 51 7e-06
UniRef100_Q8S6H9 Putative retroelement [Oryza sativa] 51 7e-06
UniRef100_Q8S5Q3 Putative non-LTR retroelement reverse transcrip... 50 9e-06
>UniRef100_O23757 Reverse transcriptase [Beta vulgaris subsp. vulgaris]
Length = 507
Score = 91.7 bits (226), Expect = 3e-18
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS 68
I GD+N ER + DF+ F++N+ LIE + +TWFR GQ+ S
Sbjct: 8 IMGDYNETLIPAER---GSHLISSQGARDFQNFINNMGLIEISPIKGFFTWFR--GQSKS 62
Query: 69 RLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCWFS 123
+LDR + +W + +P ++ RS SDHCP++ S+ NWGP+PFR LNCW +
Sbjct: 63 KLDRLFVQPEWLTSFPSLKLNILKRSPSDHCPLLAFSSHQNWGPKPFRFLNCWLT 117
>UniRef100_Q84Q63 Putative reverse transcriptase [Oryza sativa]
Length = 870
Score = 61.2 bits (147), Expect = 5e-09
Identities = 34/114 (29%), Positives = 56/114 (48%), Gaps = 4/114 (3%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS 68
I GDFN++ R+ ++ ++S + M F+A + L E P +K+TW +A
Sbjct: 142 ILGDFNMIYRARDK---NNSNLNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATL 198
Query: 69 -RLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+LDR + +W +PH V + SDHCP++ + PR F+ N W
Sbjct: 199 VKLDRCFCNEEWDLAFPHHVLHALPTGPSDHCPLVLSNPQGPHRPRTFKFENFW 252
>UniRef100_Q8L3X5 Putative reverse transcriptase [Oryza sativa]
Length = 773
Score = 58.5 bits (140), Expect = 3e-08
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 4 ISCFCIAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPN 63
+ +C+ GDFN++A ++ ++ R ++ F+ + L L E G++YTW
Sbjct: 590 VGAWCVVGDFNLLATDGDK---NNGNVNRRLISKFRHTIDALELREVYLFGRRYTWSNEQ 646
Query: 64 GQAA-SRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+ +++D+ L++ DW + ++ S SDHCP++ M PR F+ + W
Sbjct: 647 ERPTLTKIDKVLVNGDWEEIFRDAHLQALSSSASDHCPLLLACDQMMHRPRKFKFESYW 705
>UniRef100_Q7X5Z1 OSJNBa0006A01.14 protein [Oryza sativa]
Length = 1189
Score = 57.0 bits (136), Expect = 1e-07
Identities = 33/114 (28%), Positives = 55/114 (47%), Gaps = 4/114 (3%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS 68
I GDFN++ R+ ++ ++S + M F+A + L E P +K+TW +A
Sbjct: 142 ILGDFNMIYRARDK---NNSNLNLARMRRFRAVIDRCELHEIPLQNRKFTWSNERRKATL 198
Query: 69 -RLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+LDR + +W +PH V + SDH P++ + PR F+ N W
Sbjct: 199 VKLDRCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLSNPQGPHRPRTFKFENFW 252
>UniRef100_Q9ZQQ6 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 56.2 bits (134), Expect = 2e-07
Identities = 34/115 (29%), Positives = 52/115 (44%), Gaps = 5/115 (4%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWF--RPNGQA 66
+ GDFN + E S + M DF+ + SL + G ++TW R NG
Sbjct: 385 LCGDFNEILDGSEHSNYDTSPFTPLGMRDFQEVVRYSSLTDLGYHGPRFTWCNKRENGLI 444
Query: 67 ASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHC--PVMFRSTDMNWGPRPFRVLN 119
+LD+ L++ WC +PH A SDH +M + + G RPF+ +N
Sbjct: 445 CKKLDKVLVNDSWCITFPHSYSVFEAGGCSDHTRGRIMLEAAAIG-GRRPFKFVN 498
>UniRef100_Q7XUD8 OSJNBa0088A01.7 protein [Oryza sativa]
Length = 1324
Score = 55.8 bits (133), Expect = 2e-07
Identities = 32/112 (28%), Positives = 54/112 (47%), Gaps = 4/112 (3%)
Query: 11 GDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS-R 69
GDFN++ R+ ++ S+S M F+A +++ L E +K+TW R
Sbjct: 596 GDFNMIYRACDK---SNSNINLRRMRRFRAAINHCELKEIHLQNRKFTWTNERRHPTMVR 652
Query: 70 LDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
LDRF + +W + H + ++ SDHCP++ + PR F+ N W
Sbjct: 653 LDRFFCNENWDLAFGHHILHTLSSGTSDHCPLLLSNPQGPQRPRTFKFENFW 704
>UniRef100_Q6UUR7 Putative reverse transcriptase [Oryza sativa]
Length = 854
Score = 55.5 bits (132), Expect = 3e-07
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 6 CFCIAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQ 65
C+ + GDFN + E R I +D+ F +SN L+E P +G+ +TW Q
Sbjct: 677 CWILMGDFNFIRSVENRNIPGGDI---NDILIFNEIISNAGLVEIPLIGRNFTWSNMQEQ 733
Query: 66 -AASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+LD S+ W +PH + T ++ +SDH P FR N W
Sbjct: 734 PLLQQLDWVFTSTAWTLKFPHTMVTATSKYISDHAPCQISIETSVPKSSIFRFENFW 790
>UniRef100_Q9AY65 Putative reverse transcriptase [Oryza sativa]
Length = 1135
Score = 54.7 bits (130), Expect = 5e-07
Identities = 31/112 (27%), Positives = 52/112 (45%), Gaps = 4/112 (3%)
Query: 11 GDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS-R 69
GDFN++ R+ ++ ++ + M F+A + L E P K++TW + +
Sbjct: 247 GDFNMIYRARDK---NNGNLNLARMRRFRATIDRCELREIPLQNKRFTWSNERQRPTLVK 303
Query: 70 LDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
LD + +W + H V + SDHCP++ + PRPFR N W
Sbjct: 304 LDHCFCNENWDLAFHHHVLHALPTGPSDHCPLVLSNPAAPCKPRPFRFENFW 355
>UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa]
Length = 710
Score = 53.9 bits (128), Expect = 8e-07
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAA- 67
+ GDFN++ E+ ++ Y F A + +L L E G+K+TW + +
Sbjct: 234 LGGDFNIIRNPTEK---NNDNYSEKWPFLFNAVIDSLDLRELELTGRKFTWANSSSKPTF 290
Query: 68 SRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVM 102
+LDR L+S++W +P ++R LSDH P++
Sbjct: 291 EKLDRILMSTEWEQKYPLSTARALSRELSDHTPLL 325
>UniRef100_Q7XSJ7 OSJNBb0078D11.8 protein [Oryza sativa]
Length = 1636
Score = 53.1 bits (126), Expect = 1e-06
Identities = 30/116 (25%), Positives = 57/116 (48%), Gaps = 4/116 (3%)
Query: 7 FCIAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWF-RPNGQ 65
+CI GDFN++A ++ ++ R + F+ L+ L L E G+++TW
Sbjct: 974 WCIVGDFNLLAAESDK---NNQNVDRRMINRFRCLLNLLELRELYLFGRRFTWSSEQESP 1030
Query: 66 AASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+++D+ L++++W + ++ S SDHCP++ M PR F+ W
Sbjct: 1031 TLTKIDKVLVNAEWEDFFRDAHLQALSSSASDHCPLLLACDAMVHRPRRFKFEAFW 1086
>UniRef100_Q5VSW6 OSJNBa0009P12.10 protein [Oryza sativa]
Length = 1230
Score = 52.8 bits (125), Expect = 2e-06
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 11 GDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS-R 69
GDFN++ R+ ++ +++ M F+A L + L E +++TW + R
Sbjct: 433 GDFNMIYRACDK---NNNNLNLRRMGHFRAALEHCELKEVHLQNRRFTWSNERRKPTLVR 489
Query: 70 LDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCWFS 123
LDRF + +W + H + ++ SDHCP++ + PR F+ N W S
Sbjct: 490 LDRFYCNENWDLGFGHHILHALSSGTSDHCPLLLTNPQGPRRPRSFKFENFWTS 543
>UniRef100_Q8LM65 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1345
Score = 52.0 bits (123), Expect = 3e-06
Identities = 32/119 (26%), Positives = 55/119 (45%), Gaps = 4/119 (3%)
Query: 4 ISCFCIAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRP- 62
+S + + GDFN++ ++ ++ ++S RS M FK L L + E P G+K+TW +
Sbjct: 520 MSPWLLIGDFNLIYKTSDK---NNSRLNRSMMQRFKGTLDRLEVKELPLSGRKFTWTQEC 576
Query: 63 NGQAASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+ S++DR DW + ++ S SDH P+ FR + W
Sbjct: 577 DNPTQSKIDRAFCCPDWDVLFDSAQMYALSSSCSDHAPLFITGCVEREQNNSFRFESFW 635
>UniRef100_Q7XPS4 OSJNBa0065O17.7 protein [Oryza sativa]
Length = 3331
Score = 52.0 bits (123), Expect = 3e-06
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 7 FCIAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPN-GQ 65
+ + GDFN++ ++++ ++ R M F+ + L L E P G+++TW
Sbjct: 807 WAVVGDFNLILEAQDKNNLN---LNRRMMGRFRRLIDELELRELPLDGRRFTWSNERESP 863
Query: 66 AASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+LDR L S+DW +P + + SDHC ++ + + FR W
Sbjct: 864 TLVKLDRVLFSADWEELFPSCLLQAASSIASDHCALLLHTCVTSPKAHRFRFEAFW 919
>UniRef100_Q7XKK3 OSJNBa0038O10.4 protein [Oryza sativa]
Length = 1045
Score = 52.0 bits (123), Expect = 3e-06
Identities = 30/112 (26%), Positives = 51/112 (44%), Gaps = 4/112 (3%)
Query: 11 GDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNG-QAASR 69
GDFN++ R+ ++ ++ + M F+A + L E P +++TW +
Sbjct: 144 GDFNIIYRARDK---NNGNLNLARMRRFRATIDRCELHEIPLQNRRFTWSNERQWPTLVK 200
Query: 70 LDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
LDR + +W + H V + SDHCP++ + PR FR N W
Sbjct: 201 LDRCFCNENWDLAFHHHVLHALPTGPSDHCPLVLSNPAAPRKPRTFRFENFW 252
>UniRef100_Q8LK00 Putative reverse transcriptase [Sorghum bicolor]
Length = 1323
Score = 52.0 bits (123), Expect = 3e-06
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 11 GDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQ---AA 67
GDFN++ ++++ +++ R+ M F+ L L+E +KYTW NG+
Sbjct: 336 GDFNLICEAQDK---NNNNINRAHMRKFRQALDASELLEIKLQNRKYTW--SNGRKNPTL 390
Query: 68 SRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
LDR + DW +P ++ SLSDHCP+ + F+ + W
Sbjct: 391 VHLDRAFCNLDWDEIFPSATLIALSSSLSDHCPLFLCNQQQPHRRATFKFESFW 444
>UniRef100_Q7XPE7 OSJNBa0060N03.14 protein [Oryza sativa]
Length = 1784
Score = 51.2 bits (121), Expect = 5e-06
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNG-QAA 67
+AGDFN++A + ++ ++S R M F+ ++ L L E G++YTW
Sbjct: 1133 VAGDFNLIAAAADK---NNSRVNRRLMNAFRNKINELELKELYLFGRRYTWSSEQQFPTL 1189
Query: 68 SRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+ DR +S++W +P ++ S SDHC ++ + G R FR W
Sbjct: 1190 VKSDRVPVSTEWEDAFPDAHLQALSSSSSDHCALLLSCGETPRGRRRFRFETFW 1243
>UniRef100_Q5W642 Retrotransposon protein, putative, unclassified [Oryza sativa]
Length = 1090
Score = 51.2 bits (121), Expect = 5e-06
Identities = 34/114 (29%), Positives = 52/114 (44%), Gaps = 4/114 (3%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS 68
I GDFN++ + ++ ++ RS M F+A L+ L E +KYTW QA
Sbjct: 100 ILGDFNLIYEARDKNNLN---LNRSLMGQFRAALNRNGLKEIRLQNRKYTWGNEREQATL 156
Query: 69 -RLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+LDR S + + + M+ S SDHCP++ + D F N W
Sbjct: 157 VKLDRVFCSCQGDLLFTNFLLQAMSTSFSDHCPLLLLNADRPRRKAHFNFENFW 210
>UniRef100_Q8LSR5 Putative reverse transcriptase [Oryza sativa]
Length = 1792
Score = 50.8 bits (120), Expect = 7e-06
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNG-QAA 67
I GDFN++ + ++ + R M F++ ++ L L E G++YTW
Sbjct: 1084 ITGDFNLITAAADKNNLR---INRRLMNAFRSKVNELELKEVYLFGRRYTWSSEQAVPTL 1140
Query: 68 SRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGPRPFRVLNCW 121
+LDR S+ W +P ++ S SDHCP + D R FR + W
Sbjct: 1141 VKLDRLFASTQWEDMFPEAHLQALSSSGSDHCPQLLTCGDRVPRQRRFRFESYW 1194
>UniRef100_Q8S6H9 Putative retroelement [Oryza sativa]
Length = 1739
Score = 50.8 bits (120), Expect = 7e-06
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 7 FCIAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWF-RPNGQ 65
FC+ GD N + + E+ G++ R ++ FK ++NL L++ G YTW + G+
Sbjct: 904 FCM-GDLNEIMHANEKYGLAPPNQNRINI--FKHHVNNLGLMDMGYNGPAYTWSNKQQGK 960
Query: 66 --AASRLDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVMFRSTDMNWGP-RPFRVLNCW 121
RLDR L + +WC +P+ + SDH P++ N P R F N W
Sbjct: 961 DLVLERLDRCLANVEWCFNYPNTTVYHLPMLYSDHAPIIAILNPKNRRPKRSFMFENWW 1019
>UniRef100_Q8S5Q3 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1228
Score = 50.4 bits (119), Expect = 9e-06
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 9 IAGDFNVVARSEERMGISDSIYGRSDMADFKAFLSNLSLIEPPAVGKKYTWFRPNGQAAS 68
I GDFN+ + E+ S++ +M F +F++NL L E G K+TW
Sbjct: 655 IGGDFNLYRFASEK---SNTNTNSRNMDMFNSFIANLDLREIYRSGPKFTWTNKQDSLVQ 711
Query: 69 R-LDRFLLSSDWCSCWPHGVQTVMARSLSDHCPVM 102
LDR L+++DW +P + + + R SDH P++
Sbjct: 712 EVLDRILVTTDWDDMYPTALLSSILRVGSDHIPLL 746
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.325 0.137 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,555,871
Number of Sequences: 2790947
Number of extensions: 7001601
Number of successful extensions: 16023
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 15915
Number of HSP's gapped (non-prelim): 106
length of query: 124
length of database: 848,049,833
effective HSP length: 100
effective length of query: 24
effective length of database: 568,955,133
effective search space: 13654923192
effective search space used: 13654923192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0281b.2