BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0278.5.1
         (30 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q7Y1Z3 Putative small nuclear ribonucleoprotein Prp4p ...    36  0.25
UniRef100_O22212 Hypothetical Trp-Asp repeats containing protein...    36  0.25

>UniRef100_Q7Y1Z3 Putative small nuclear ribonucleoprotein Prp4p [Arabidopsis
           thaliana]
          Length = 554

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 17/30 (56%), Positives = 22/30 (72%), Gaps = 3/30 (10%)

Query: 4   IVTVSHDRTIKLWSSNMTNDNE---HTMDV 30
           I TVSHDRTIKLW+S+  +D +    TMD+
Sbjct: 523 IATVSHDRTIKLWTSSGNDDEDEEKETMDI 552


>UniRef100_O22212 Hypothetical Trp-Asp repeats containing protein At2g41500
           [Arabidopsis thaliana]
          Length = 554

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 17/30 (56%), Positives = 22/30 (72%), Gaps = 3/30 (10%)

Query: 4   IVTVSHDRTIKLWSSNMTNDNE---HTMDV 30
           I TVSHDRTIKLW+S+  +D +    TMD+
Sbjct: 523 IATVSHDRTIKLWTSSGNDDEDEEKETMDI 552


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.313    0.128    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,362,297
Number of Sequences: 2790947
Number of extensions: 802904
Number of successful extensions: 5750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5742
Number of HSP's gapped (non-prelim): 8
length of query: 30
length of database: 848,049,833
effective HSP length: 6
effective length of query: 24
effective length of database: 831,304,151
effective search space: 19951299624
effective search space used: 19951299624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)