BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0269b.9
         (1085 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9BBS7 DNA-directed RNA polymerase beta'' chain [Lotus...  1827  0.0
UniRef100_Q8HVY3 DNA-directed RNA polymerase beta'' chain [Glyci...  1382  0.0
UniRef100_P12227 DNA-directed RNA polymerase beta'' chain [Pisum...  1382  0.0
UniRef100_P38550 DNA-directed RNA polymerase beta'' chain [Nicot...  1271  0.0
UniRef100_Q68S16 RNA polymerase beta II subunit [Panax ginseng]      1266  0.0
UniRef100_Q8S8Y1 DNA-directed RNA polymerase beta'' chain [Atrop...  1255  0.0
UniRef100_P11704 DNA-directed RNA polymerase beta'' chain [Spina...  1236  0.0
UniRef100_Q7YJY0 DNA-directed RNA polymerase beta'' chain [Calyc...  1233  0.0
UniRef100_P56764 DNA-directed RNA polymerase beta'' chain [Arabi...  1187  0.0
UniRef100_Q9MTM3 DNA-directed RNA polymerase beta'' chain [Oenot...  1176  0.0
UniRef100_Q9THV5 DNA-directed RNA polymerase beta'' chain [Sinap...  1151  0.0
UniRef100_P60289 DNA-directed RNA polymerase beta'' chain [Ambor...  1145  0.0
UniRef100_Q6EW58 RNA polymerase beta' subunit-2 [Nymphaea alba]      1100  0.0
UniRef100_P06274 DNA-directed RNA polymerase beta'' chain [March...   681  0.0
UniRef100_P60290 DNA-directed RNA polymerase beta'' chain [Physc...   639  0.0
UniRef100_Q85C71 DNA-directed RNA polymerase beta'' chain [Antho...   630  e-179
UniRef100_Q6ENX1 RNA polymerase beta subunit [Saccharum officina...   557  e-157
UniRef100_P16025 DNA-directed RNA polymerase beta'' chain [Zea m...   553  e-155
UniRef100_Q9XPS9 DNA-directed RNA polymerase beta'' chain [Triti...   545  e-153
UniRef100_P12093 DNA-directed RNA polymerase beta'' chain [Oryza...   538  e-151

>UniRef100_Q9BBS7 DNA-directed RNA polymerase beta'' chain [Lotus japonicus]
          Length = 1332

 Score = 1827 bits (4732), Expect = 0.0
 Identities = 905/925 (97%), Positives = 909/925 (97%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHG+LV
Sbjct: 253  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGNLV 312

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 372

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL
Sbjct: 373  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 432

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KEK+RKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL
Sbjct: 433  KEKVRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 492

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 458
            KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII
Sbjct: 493  KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 552

Query: 459  PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 518
            PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI
Sbjct: 553  PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 612

Query: 519  FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK 578
            FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK
Sbjct: 613  FQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITLNK 672

Query: 579  KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKKKT 638
            KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKK  +  KKKT
Sbjct: 673  KSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKNSKESKKKT 732

Query: 639  NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN 698
            NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN
Sbjct: 733  NWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGN 792

Query: 699  GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH 758
            GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH
Sbjct: 793  GKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSH 852

Query: 759  ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS 818
            ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS
Sbjct: 853  ISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRS 912

Query: 819  FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH 878
            FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH
Sbjct: 913  FIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLGVAPQIANFFSFYH 972

Query: 879  LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP 938
            LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP
Sbjct: 973  LITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHP 1032

Query: 939  NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 998
            NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI
Sbjct: 1033 NYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATI 1092

Query: 999  HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1058
            HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER
Sbjct: 1093 HGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNER 1152

Query: 1059 ITGILGIPWSRKISMSRKLLQDNIS 1083
            ITGILGIPW   I     + Q  IS
Sbjct: 1153 ITGILGIPWRFLIGAELTIAQSRIS 1177


>UniRef100_Q8HVY3 DNA-directed RNA polymerase beta'' chain [Glycine max]
          Length = 1384

 Score = 1382 bits (3577), Expect = 0.0
 Identities = 702/956 (73%), Positives = 792/956 (82%), Gaps = 38/956 (3%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IY GSRCI VRNQDIGIGLINRF   QTQPI IRTPFTCRNTSWICRLCYG+SP HG LV
Sbjct: 257  IYRGSRCIAVRNQDIGIGLINRFKTLQTQPISIRTPFTCRNTSWICRLCYGQSPTHGHLV 316

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE VR+P NGKI+FNE+  +PTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEQVRAPYNGKIQFNEDLVHPTRT 376

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLCYIDLYVTIES DI+HNV IPPKSFLLVQN+QYVKSEQ+IAEIRAGTYT NL
Sbjct: 377  RHGHPAFLCYIDLYVTIESGDIIHNVTIPPKSFLLVQNNQYVKSEQVIAEIRAGTYTFNL 436

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KEK+RKH++SD EGEMHWST++YH SEF YSNVHILPKTSHLWILSG S++S +VS S+ 
Sbjct: 437  KEKVRKHVYSDLEGEMHWSTDVYHASEFRYSNVHILPKTSHLWILSGKSYRSGSVSFSIR 496

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
            KDQDQM+ H L T +R+  N L S  +VR                         +  DHC
Sbjct: 497  KDQDQMNIHYLSTGERDFCNLLASKKKVRHKLFRFNPSDKKERRISDYSIFNQIISIDHC 556

Query: 434  HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSI 491
            HF HPTI  DT++LLAK+RRNR IIPF F+SI+ER+ ELM    IS+EIPI+GI  +NSI
Sbjct: 557  HFTHPTIFHDTTDLLAKRRRNRLIIPFQFQSIQERDKELMLASSISIEIPINGIFRRNSI 616

Query: 492  LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKED-LIEYRGIREFKPKYQIKVDRFFFIPQE 550
            LAYFDDPQYRTQSSGI KY+TIGI+SIF+KED LIEY+G++EFK KYQIKVD+FFFIP+E
Sbjct: 617  LAYFDDPQYRTQSSGITKYRTIGINSIFKKEDFLIEYQGVKEFKTKYQIKVDQFFFIPEE 676

Query: 551  VHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEI 610
            VHIL ESSSIMVRNNSI+ V+T ITLN +SRV GLVR+EK KKKIELKIFSGDI+FPGE+
Sbjct: 677  VHILPESSSIMVRNNSIVEVDTLITLNIRSRVRGLVRLEKKKKKIELKIFSGDIYFPGEM 736

Query: 611  DKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSIN 670
            DKIS+HSA+LIPP  VKK     +KK  NW Y+QWIT TKKKYFVLVRPVILY+IAD IN
Sbjct: 737  DKISRHSAVLIPPRTVKKN--SKEKKMKNWIYVQWITITKKKYFVLVRPVILYEIADRIN 794

Query: 671  LVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSI 730
            LVKLFPQD+F+E DNLELKV+N+IL GNGKSIRGI DTSIQLVRTCLVLNW++D+K SSI
Sbjct: 795  LVKLFPQDMFQERDNLELKVINYILSGNGKSIRGISDTSIQLVRTCLVLNWDQDKKFSSI 854

Query: 731  EEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSI 790
            E A ASFVE+S  GL+RYFLRIDLVKSHISYI KRNDPSS        SD  N+NPF+SI
Sbjct: 855  ENAHASFVEISIKGLVRYFLRIDLVKSHISYISKRNDPSSE---KKEGSDHTNMNPFYSI 911

Query: 791  Y---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEIN 847
            Y   K  +Q+S +Q  GT+R LL  NKE + F+ILSSSNCFQ+  FN+ KY+NGIKE IN
Sbjct: 912  YIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFQIRSFNHGKYYNGIKEGIN 971

Query: 848  QFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYY 907
            Q +R+  IPIK SLGPLG+APQ+A+ F FY LITHN+IS I KN QL+K KETFQV +YY
Sbjct: 972  QIQRDAMIPIKNSLGPLGIAPQVAH-FDFYRLITHNQISII-KNGQLDKLKETFQVFQYY 1029

Query: 908  LMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGP 967
             +DENERIYKPDL +NIILNPF+LNW F+H NYCEKTF I+SLGQFICENVCIVQTKN P
Sbjct: 1030 FLDENERIYKPDLCSNIILNPFYLNWHFLHHNYCEKTFTIMSLGQFICENVCIVQTKNAP 1089

Query: 968  NLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQ 1027
            +LKSGQ++TVQMD VGIR ANPYLATPGAT+HGHYGE+L EGDILVTFIYEKSRSGDITQ
Sbjct: 1090 HLKSGQILTVQMDSVGIRSANPYLATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQ 1149

Query: 1028 GLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            GLPKVEQVLEVRSIDSISMNLEKR+D WN RIT ILGIPW   I     + Q  IS
Sbjct: 1150 GLPKVEQVLEVRSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAELTIAQSRIS 1205


>UniRef100_P12227 DNA-directed RNA polymerase beta'' chain [Pisum sativum]
          Length = 1163

 Score = 1382 bits (3576), Expect = 0.0
 Identities = 708/956 (74%), Positives = 786/956 (82%), Gaps = 46/956 (4%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IYIGSRCIVVRNQDIGIGLINRFI FQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV
Sbjct: 49   IYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 108

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAEYVR+PSNGKIK NE+  +PTRT
Sbjct: 109  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKLNEDLVHPTRT 168

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHG+PAF+C IDLYVTIES+DI+HNVIIPPKSFLLVQNDQYVKSEQ+IAEIRAGTYT NL
Sbjct: 169  RHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNL 228

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KE++RKHI+SDSEGEMHWST++YH SEF YSNVHILPKTSHLWILSG S +S+T+   L 
Sbjct: 229  KERVRKHIYSDSEGEMHWSTDVYHASEFMYSNVHILPKTSHLWILSGKSCRSNTIHFLLR 288

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
            KDQDQ++  SL   K N SN L  N+QV+                         +C DH 
Sbjct: 289  KDQDQITMDSLSNGKTNISNLLERNDQVKHKLFRFNTFGTKEKGISDYSIFNEIICTDHS 348

Query: 434  HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSI 491
            +   P I  DT   LAK+RRNRF+IPF F+SI+ER NE M    +S+EIPI+GI H+NSI
Sbjct: 349  Y---PAIFHDTFYFLAKRRRNRFLIPFPFQSIQERKNERMSPSGVSIEIPINGIFHRNSI 405

Query: 492  LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
             AYFDDPQYR  SSGI KY+TIGIHSIFQKED IEYRGI+E KPK QI+VDRFFFIP+EV
Sbjct: 406  FAYFDDPQYRRHSSGITKYRTIGIHSIFQKEDFIEYRGIKELKPKSQIQVDRFFFIPEEV 465

Query: 552  HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
            HIL +SSS+MVRNNS++G+ TPIT N +SRVGGLVR++K KKKIELKIFSG+IHFPGE+D
Sbjct: 466  HILPKSSSLMVRNNSLVGIGTPITFNIRSRVGGLVRLDKKKKKIELKIFSGNIHFPGEMD 525

Query: 612  KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
            KIS+HSAILIPP  VKKK     KK  NW Y+QWI TTKKKYFVLVRPVILY+I DS N 
Sbjct: 526  KISRHSAILIPPGTVKKKKCNKSKKIKNWIYVQWIATTKKKYFVLVRPVILYEIPDSNNF 585

Query: 672  VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
            VKLFPQDLF+E DNLELKV+N+ILYGNGKSIRGI DT IQLVRTCLV NW++ + SSSIE
Sbjct: 586  VKLFPQDLFQEKDNLELKVVNYILYGNGKSIRGISDTRIQLVRTCLVFNWDDGKNSSSIE 645

Query: 732  EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
            EA ASF+EV TNGLI YFLRIDLVKS+ SYIRKRN+PS  GLI  N+SDR  INPFFSI+
Sbjct: 646  EAPASFIEVRTNGLIEYFLRIDLVKSNTSYIRKRNEPSGFGLIGDNKSDR--INPFFSIH 703

Query: 792  -KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEE-INQF 849
             K  IQQSLSQ HGTIRMLLNRNKE RS+IILSSSNCFQM PFNN K HNGIK++ I   
Sbjct: 704  SKGKIQQSLSQNHGTIRMLLNRNKECRSWIILSSSNCFQMRPFNNEKSHNGIKKDPIISI 763

Query: 850  KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
              N         GPLG+A Q+ANF+S YHLITHN+IS I KNLQL+K  E FQVIKYYLM
Sbjct: 764  NNN---------GPLGIALQVANFYSLYHLITHNQISII-KNLQLDKLTEIFQVIKYYLM 813

Query: 910  DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPN- 968
            DEN++I KPDLY+NIILNPFHLNW F+H  YCEKTF  ISLGQFICEN+CI Q KN P+ 
Sbjct: 814  DENDKICKPDLYSNIILNPFHLNWFFLHHFYCEKTFTRISLGQFICENICIAQMKNRPHL 873

Query: 969  -LKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQ 1027
             LKSGQVI VQMD V IR ANPYLATPGATIHGHYGE+L +GDILVTFIYEKSRSGDITQ
Sbjct: 874  KLKSGQVIIVQMDSVIIRSANPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDITQ 933

Query: 1028 GLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            GLPKVEQ+LE+RSIDSISMNLEKRIDAWNE IT I+GIPW   I     + Q  IS
Sbjct: 934  GLPKVEQILEIRSIDSISMNLEKRIDAWNECITKIIGIPWGFLIGAELTIAQSRIS 989


>UniRef100_P38550 DNA-directed RNA polymerase beta'' chain [Nicotiana tabacum]
          Length = 1388

 Score = 1271 bits (3288), Expect = 0.0
 Identities = 650/957 (67%), Positives = 756/957 (78%), Gaps = 41/957 (4%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IY+G RCI  RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 253  IYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 312

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+  +PTRT
Sbjct: 313  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 372

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAG  TLN 
Sbjct: 373  RHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNF 432

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KEK+RKHI+SDS+GEMHWST++YH  EF Y NVH+LPKTSHLWIL G   +S  V LS+ 
Sbjct: 433  KEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGRPCRSSLVYLSIH 492

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
            KDQDQM+ H L   +R TSN  V+N+Q R                         +C    
Sbjct: 493  KDQDQMNAHFLSGKRRYTSNLSVTNDQARQKLFSSDFSGKKEDRIPDYSDLNRIICAGQY 552

Query: 434  HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
            + ++  I  + S+LL+K+RRN+FIIP    SI+E  NELMP   IS+EIP++GI  +NSI
Sbjct: 553  NLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIEIPVNGIFRRNSI 610

Query: 492  LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
            LAYFDDP+YR +SSGI KY T+  HS+ +KEDL+EYRG++EF+PKYQ+KVDRFFFIP+EV
Sbjct: 611  LAYFDDPRYRRKSSGIIKYGTVETHSVIKKEDLLEYRGVKEFRPKYQMKVDRFFFIPEEV 670

Query: 552  HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
            HIL  SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE D
Sbjct: 671  HILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETD 730

Query: 612  KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
            KIS+H+ +LIPP   K+   +  KK  NW Y+Q IT +KKK+FVLVRPV+ Y+I D INL
Sbjct: 731  KISRHTGVLIPPGTGKRN-SKESKKVKNWIYVQRITPSKKKFFVLVRPVVTYEITDGINL 789

Query: 672  VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
              LFP D  +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+KSSS E
Sbjct: 790  ATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCE 849

Query: 732  EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
            EA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD  NINPF SIY
Sbjct: 850  EARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIY 909

Query: 792  ---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
               K  IQQS++Q  GTI  LLNRNKE +S IILS++NC +MGPF +VKYH+ IK+ I  
Sbjct: 910  SYSKAKIQQSINQPQGTIHTLLNRNKECQSLIILSAANCSRMGPFKDVKYHSVIKKSI-- 967

Query: 849  FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI--KY 906
             K++  IPI+ SLGPLG +  I NF+S YHLITHN+I  +   LQL+  K+TFQVI  KY
Sbjct: 968  -KKDPLIPIRNSLGPLGTSLPIENFYSSYHLITHNQI-LVTNYLQLDNLKQTFQVIKFKY 1025

Query: 907  YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 966
            YLMDEN +I+ PD   NIILNPF+LNW F+H NYCE+T  IISLGQFICENVCI   KNG
Sbjct: 1026 YLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI--AKNG 1083

Query: 967  PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
            P LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKSRSGDIT
Sbjct: 1084 PPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDIT 1143

Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            QGLPKVEQVLEVRS+DSISMNLEKRI+ WN+ IT ILGIPW   I     + Q  IS
Sbjct: 1144 QGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRIS 1200


>UniRef100_Q68S16 RNA polymerase beta II subunit [Panax ginseng]
          Length = 1387

 Score = 1266 bits (3277), Expect = 0.0
 Identities = 653/952 (68%), Positives = 748/952 (77%), Gaps = 36/952 (3%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IY+G RCI  RNQDIG GL+NRFI F+ QPI+IRTPFTCR+TSWICRLCYGRSP HGDL 
Sbjct: 257  IYLGPRCIATRNQDIGSGLVNRFITFRAQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLA 316

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+  +PTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 376

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLC IDLYVTIES DI+HNV IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TLN 
Sbjct: 377  RHGHPAFLCSIDLYVTIESEDIIHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTLNF 436

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KEK+RKHI+SDSEGEMHW+T++YH   F Y NVH+LPKTSHLWIL G   +SD V+LS+ 
Sbjct: 437  KEKVRKHIYSDSEGEMHWNTDVYHAPAFTYGNVHLLPKTSHLWILLGEPCRSDLVALSIH 496

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVR---LCPD-------------------HCHFM 436
            KDQDQM+ HSL   +R  SN  V+N+Q R      D                   HC+  
Sbjct: 497  KDQDQMNAHSLSVKRRYISNLSVTNDQARHKFFSSDFSGKKEDRITDYSELNRIGHCNLP 556

Query: 437  HPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSILAY 494
            +  I    S+LLAK+RRNRFIIP   +SI+E  NELMP   IS+EIPI GI  K SI+AY
Sbjct: 557  YLAILHANSDLLAKRRRNRFIIP--LQSIQEHENELMPSSGISIEIPIHGIFRKKSIIAY 614

Query: 495  FDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHIL 554
            FDDP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EVHIL
Sbjct: 615  FDDPRYRRKSSGITKYGTIEVHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHIL 674

Query: 555  SESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKIS 614
              SSSIMVRNNSIIGV+T ITL  +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE DKIS
Sbjct: 675  PGSSSIMVRNNSIIGVDTQITLTTRSRVGGLVRVERKKKRIELKIFSGDIHFPGETDKIS 734

Query: 615  QHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKL 674
            +HS +LIPP   K    +  KK  NW Y+Q IT TKKKYFVLVRPV+ Y+I D INL  L
Sbjct: 735  RHSGVLIPPGTGKTN-SKESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEITDGINLATL 793

Query: 675  FPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEAL 734
            F  DL +E DN++L+V+N+ILYG GK IRG  DTSIQLVRTCLVLNW +D+KSSSIEEA 
Sbjct: 794  FFPDLLQERDNVQLRVVNYILYGTGKPIRGFYDTSIQLVRTCLVLNWVQDKKSSSIEEAR 853

Query: 735  ASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY--- 791
             SFVE+  N LIR FL+IDL KS I Y  KR DPS SGLIS N SDR NINPF S +   
Sbjct: 854  TSFVEIRINSLIRDFLKIDLAKSPILYTGKRKDPSGSGLISENGSDRTNINPFSSSFFYS 913

Query: 792  KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKR 851
            K  I++SL+Q  GTI  LLNRNKE +S IILSSSNCF+MGPFN+VKYHN IKE I   ++
Sbjct: 914  KARIKESLNQNQGTIHTLLNRNKECQSLIILSSSNCFRMGPFNDVKYHNVIKESI---QK 970

Query: 852  NHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDE 911
            +  I I+ SLGPLG A QIANF+SF HLIT+N+I  +   LQL+  K++FQV+KYYLMDE
Sbjct: 971  DPLIQIRNSLGPLGTALQIANFYSFSHLITYNQI-LVTNYLQLDNLKQSFQVLKYYLMDE 1029

Query: 912  NERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKS 971
            N +IY PD   NIILNPF+LNW F+H NYCE+T   +SLGQFICENVCI   KNGP+LK 
Sbjct: 1030 NGKIYNPDRCCNIILNPFNLNWFFLHHNYCEETSTTMSLGQFICENVCI--AKNGPHLKP 1087

Query: 972  GQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
            GQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LYEGD LVTFIYEKSRSGDITQGLPK
Sbjct: 1088 GQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPK 1147

Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            VEQVLEVRSIDSISMNLEKR++ WNE IT  LGIPW   I     ++Q  IS
Sbjct: 1148 VEQVLEVRSIDSISMNLEKRVEGWNECITRNLGIPWGFLIGAELTIVQSRIS 1199


>UniRef100_Q8S8Y1 DNA-directed RNA polymerase beta'' chain [Atropa belladonna]
          Length = 1389

 Score = 1255 bits (3247), Expect = 0.0
 Identities = 650/957 (67%), Positives = 749/957 (77%), Gaps = 44/957 (4%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IY+G RCI  RNQDIGIGL+NRFI F+ QPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 257  IYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 316

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+  +PTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 376

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLC IDLYVTIES DI+HNV IPPKS LLVQNDQYV+SEQ+IAEIRAG  TLN 
Sbjct: 377  RHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIAEIRAGISTLNF 436

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KEK+RKHI+SDS+GEMHWST++YH  EF Y NVH+LPKTSHLWIL G   KS  V LS+ 
Sbjct: 437  KEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILLGGPCKSSLVYLSIH 496

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------------------LCPDHC 433
            KDQDQM+ HSL   +R TSN  V+N+Q R                         +C    
Sbjct: 497  KDQDQMNAHSLSGKQRYTSNLSVTNDQARQKLFSSGFSGKKEDRIPDYSDLNRIICTGQY 556

Query: 434  HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSI 491
            + ++  I  + S+LL+K+RRN+FIIP    SI+E  NELMP   IS+EIP++GI  +NSI
Sbjct: 557  NLVYSPILHENSDLLSKRRRNKFIIP--LHSIQELENELMPCSGISIEIPVNGIFRRNSI 614

Query: 492  LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
            LAYFDDP+YR +SSGI KY TI  HS+ +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EV
Sbjct: 615  LAYFDDPRYRRKSSGIIKYGTIETHSVIKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEV 674

Query: 552  HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
            HIL  SSSIMVRNNSI+GV+T ITLN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE D
Sbjct: 675  HILPGSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIHFPGETD 734

Query: 612  KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
            KIS+H+ +LIPP   K    +  KK   W Y+Q IT +KKK+FVLVRPV+ Y+I D IN 
Sbjct: 735  KISRHTGLLIPPGTGKIN-SKESKKVKKWIYVQRITPSKKKFFVLVRPVVTYEITDGINF 793

Query: 672  VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
              LFP D  +E DN++L+++N+ILYGNGK IRGI DTSIQLVRTCLVLNWN+D+KSSS E
Sbjct: 794  ETLFPPDPLQERDNVQLRIVNYILYGNGKPIRGISDTSIQLVRTCLVLNWNQDKKSSSCE 853

Query: 732  EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
            EA ASFVE+ TNGLIR+FLRI+LVKS ISYI KRNDPS SGL+S N SD  NINPF SIY
Sbjct: 854  EARASFVEIRTNGLIRHFLRINLVKSPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIY 913

Query: 792  ---KENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQ 848
               K  IQQSL+Q  GTI  LLNRNKE +S IILSS+NC +MG    +KYH+ IK+ I  
Sbjct: 914  SYSKAKIQQSLNQPQGTIHTLLNRNKECQSLIILSSANCSRMG---TLKYHSVIKDSI-- 968

Query: 849  FKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI--KY 906
             K++  IPI+ SLGPLG    I NF+S Y LITHN+I  +   LQL+  K+TFQVI  KY
Sbjct: 969  -KKDPLIPIRNSLGPLGTCLPIENFYSSYRLITHNQI-LVTNYLQLDNLKQTFQVIKFKY 1026

Query: 907  YLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNG 966
            YLMDEN +I+ PD   NIILNPF+LNW F+H NYCE+T  IISLGQFICENVCI   KNG
Sbjct: 1027 YLMDENGKIFNPDPCRNIILNPFNLNWYFLHHNYCEETSKIISLGQFICENVCI--AKNG 1084

Query: 967  PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
            P LKSGQVI VQ+D + IR A PYLATPGAT+HGHYGE LYEGD LVTFIYEKSRSGDIT
Sbjct: 1085 PPLKSGQVILVQVDSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDIT 1144

Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            QGLPKVEQVLEVRSIDSISMNLEKR++ WN+ IT ILGIPW   I     + Q  IS
Sbjct: 1145 QGLPKVEQVLEVRSIDSISMNLEKRVEGWNKCITRILGIPWGFLIGAELTIAQSRIS 1201


>UniRef100_P11704 DNA-directed RNA polymerase beta'' chain [Spinacia oleracea]
          Length = 1361

 Score = 1236 bits (3198), Expect = 0.0
 Identities = 641/952 (67%), Positives = 743/952 (77%), Gaps = 47/952 (4%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IY+GSRCI  RNQDIG+GL+NRFI  +TQ I IRTPFTCR+ SWICRLCYGRSP HG LV
Sbjct: 257  IYMGSRCIATRNQDIGVGLVNRFITLRTQLISIRTPFTCRSASWICRLCYGRSPTHGGLV 316

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKI+FNE+  +PTRT
Sbjct: 317  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIQFNEDLVHPTRT 376

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLCYIDLYVTIES+DI+HNV IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TLN 
Sbjct: 377  RHGHPAFLCYIDLYVTIESDDILHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTLNF 436

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KE++RKHI+SDSEGEMHWST++YH  EF Y NVH+LPKTSHLW+LSG  ++S  V  SL 
Sbjct: 437  KERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGKPYRSSVVPFSLS 496

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------RLCP-------DHCHFMHP 438
            KDQDQM+THSL   +   SN  V+N+QV             R+          HC+ ++P
Sbjct: 497  KDQDQMNTHSLSFEQIYISNPSVTNDQVKDKLSDSFSKKEDRITDYSELNRIGHCNLIYP 556

Query: 439  TISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELM--PDISVEIPIDGIIHKNSILAYFD 496
              + D   LLAKKRRNRFIIP  F+  +ER  ELM    IS+EIPI+GI  KNSI AYFD
Sbjct: 557  AKNLD---LLAKKRRNRFIIP--FQGSQERKKELMSLSGISIEIPINGIFRKNSIFAYFD 611

Query: 497  DPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSE 556
            DP+YR +SSGI KY TI +HSI +KEDLIEYRG++EF+PKYQ+KVDRFFFIP+EVHIL+ 
Sbjct: 612  DPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILAG 671

Query: 557  SSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQH 616
            SSSIMVRNNSIIGV+T ITLN +SR+GG+VRVE+ KKKIEL IFSGDIHFPGE DKIS+H
Sbjct: 672  SSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGDIHFPGETDKISRH 731

Query: 617  SAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKLFP 676
            S ILIPP     K  +N KK   W Y+Q IT TKKKYFVLVRPV+ Y+I D INL  LFP
Sbjct: 732  SGILIPPSRKNSKDSKNLKK---WIYVQRITPTKKKYFVLVRPVVPYEITDGINLATLFP 788

Query: 677  QDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALAS 736
            QDL +E DN++L+V+N+ILYGNGK  RGI DTSIQLVRTCLVLNWN+D+K SSIEEA  S
Sbjct: 789  QDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLVRTCLVLNWNQDKKGSSIEEARGS 848

Query: 737  FVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY---KE 793
            FVEV TNG+I+ FL+++LVK  ISYI KRNDPSS        SD  N+NPF+SIY   K 
Sbjct: 849  FVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSSE---KKEGSDHTNMNPFYSIYIYPKT 905

Query: 794  NIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNH 853
             +Q+S +Q  GT+R LL  NKE + F+ILSSSNCF++GPF  VKY   +       K++ 
Sbjct: 906  KLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRIGPFKGVKYPKEL------IKKDP 959

Query: 854  KIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIK--YYLMDE 911
             IPI+ S GPLG A QIANFFSFY+LITHN+I  +   LQL+  K+TFQ  K  YYLMDE
Sbjct: 960  LIPIRNSFGPLGTALQIANFFSFYYLITHNQI-LVTNYLQLDNLKQTFQPFKFQYYLMDE 1018

Query: 912  NERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKS 971
            N RIY PD  +NII NPF LNW F+H ++CE+T   I LGQF+CENVCI  TK G +LKS
Sbjct: 1019 NGRIYNPDPCSNIIFNPFKLNWYFLHYHFCEETSTKIDLGQFVCENVCI--TKKGTHLKS 1076

Query: 972  GQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
            GQV+ VQ D V IR A PYLATPGAT+HGHYGE++YEGD LVTFIYEKSRSGDITQGLPK
Sbjct: 1077 GQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPK 1136

Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            VEQVLEVRSIDSIS+NLEKRID+WNERIT ILG PW   I     + Q  IS
Sbjct: 1137 VEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRIS 1188


>UniRef100_Q7YJY0 DNA-directed RNA polymerase beta'' chain [Calycanthus fertilis var.
            ferax]
          Length = 1377

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 642/954 (67%), Positives = 746/954 (77%), Gaps = 40/954 (4%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IY+G RCI  RNQDIGIGL+NRFI F+ QPI+IRTPF CR+TSWICRLCYGRSP HGDLV
Sbjct: 256  IYMGPRCIAARNQDIGIGLVNRFITFRAQPIYIRTPFLCRSTSWICRLCYGRSPAHGDLV 315

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKI+FNE+  +PTRT
Sbjct: 316  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPFNGKIQFNEDLVHPTRT 375

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLCY DLYVTIES+DI+HNV IP KSFLLVQNDQYV+SEQ+IAEIRAGT T NL
Sbjct: 376  RHGHPAFLCYTDLYVTIESHDILHNVNIPQKSFLLVQNDQYVESEQVIAEIRAGTSTFNL 435

Query: 339  --KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLS 396
              KEK+RKHI+SDSEGEMHWST++YH  E+ Y NVH+LPKTSHLWILSG   +S  V  S
Sbjct: 436  KVKEKVRKHIYSDSEGEMHWSTDVYHAPEYTYGNVHLLPKTSHLWILSGGLCRSSIVPFS 495

Query: 397  LLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR--------------LCPD----------- 431
            L KDQDQM+ HSL   +R  S+  V+N +VR                PD           
Sbjct: 496  LHKDQDQMNVHSLSVEQRYISDLSVTNVRVRHKLFSSDSSGKKGGRAPDYSGPDRIISNG 555

Query: 432  HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKN 489
            H +F++P I  + S+LLAK+RRNRFIIP  F+S +ER  ELMP   IS+EIPI+GI+ +N
Sbjct: 556  HWNFIYPAILHENSDLLAKRRRNRFIIP--FQSDQEREKELMPRSGISIEIPINGILRRN 613

Query: 490  SILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQ 549
            SILAYFDDP+YR  SSGI KY TIG+ SI +KEDLIEYR  +EF+PKYQ+KVDRFFFIP+
Sbjct: 614  SILAYFDDPRYRRSSSGITKYGTIGVDSIVKKEDLIEYRRAKEFRPKYQMKVDRFFFIPE 673

Query: 550  EVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGE 609
            EVHIL  SS +MVRNNSIIGVNT I LN +SRVGGLVRVE+ KK+IELKIFSGDIHFPGE
Sbjct: 674  EVHILPASSPVMVRNNSIIGVNTRIALNTRSRVGGLVRVERKKKRIELKIFSGDIHFPGE 733

Query: 610  IDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSI 669
             DKIS+HS ILIPP   KK + +  KK  NW Y+Q IT TKKKYFVLVRPV+ Y+IAD I
Sbjct: 734  TDKISRHSGILIPPGTGKKNV-KESKKWKNWIYVQRITPTKKKYFVLVRPVVTYEIADGI 792

Query: 670  NLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSS 729
            NL  LFPQD  +E DN++L+V+N+ILYGNGK IRGI  TS+QLVRTCLVLNW++D ++ S
Sbjct: 793  NLETLFPQDPLQERDNVQLRVVNYILYGNGKPIRGISHTSLQLVRTCLVLNWDQD-RNGS 851

Query: 730  IEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFS 789
            IEE  ASFVEV  NGLIR FL+IDLVKS I Y  KRND +SSG I  N SDR NINPF+ 
Sbjct: 852  IEEVHASFVEVRANGLIRDFLKIDLVKSPILYSGKRNDTTSSGFIPNNGSDRTNINPFY- 910

Query: 790  IYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQF 849
             +K  I QSL+Q  GTIR LLNRNKE +SF+ILSSS+C ++G FN  K H   KE I   
Sbjct: 911  -FKARI-QSLTQHQGTIRTLLNRNKECQSFLILSSSDCSRIGSFNGSKSHKVTKESIT-I 967

Query: 850  KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
            K +  IPI+ SLGPLG  P+IANF S Y+LITHN+I  + K L L+  K+TFQV+KYYLM
Sbjct: 968  KEDPTIPIRNSLGPLGTVPKIANFDSSYYLITHNQI-LLNKYLSLDNLKQTFQVLKYYLM 1026

Query: 910  DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNL 969
            DEN RIY PD  +NII NPF LNW F+  +YCE+T  II+ GQFICENVCI  +K GP++
Sbjct: 1027 DENGRIYNPDPRSNIIFNPFDLNWCFLPHDYCEETSTIINPGQFICENVCI--SKYGPHI 1084

Query: 970  KSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGL 1029
            KSGQ++ V++D + IR A P+LATPGAT+HGH GE+LYEGD LVTFIYEKSRSGDITQGL
Sbjct: 1085 KSGQILIVRVDSLVIRSAKPHLATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQGL 1144

Query: 1030 PKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            PKVEQVLE RSIDSISMNLEKR++ WNERIT ILGIPW   I     + Q  IS
Sbjct: 1145 PKVEQVLEARSIDSISMNLEKRVEGWNERITKILGIPWGFLIGAELTIAQSRIS 1198


>UniRef100_P56764 DNA-directed RNA polymerase beta'' chain [Arabidopsis thaliana]
          Length = 1376

 Score = 1187 bits (3071), Expect = 0.0
 Identities = 621/958 (64%), Positives = 734/958 (75%), Gaps = 50/958 (5%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IYIGSRC+  RNQD+GIGL+NR I F TQ I IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 255  IYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLV 314

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKIKFNE+  +PTRT
Sbjct: 315  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPTRT 374

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIR GTYT + 
Sbjct: 375  RHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTFHF 434

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KE++RK+I+SDSEGEMHWST++ H  EF YSNVH+LPKTSHLWILSG S  S  +  S+ 
Sbjct: 435  KERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLIRFSIH 494

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQV-------------------------RLCPDHC 433
            KDQDQM+   L   +++ S+  V+N+QV                          L   H 
Sbjct: 495  KDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIYDYSELNGNLGTSHY 554

Query: 434  HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIHKNSI 491
            + ++  I  + S+LLAK+RRNRF+IP  F+SI+E+  E +P   ISVEIPI+GI  +NSI
Sbjct: 555  NLIYSAIFHENSDLLAKRRRNRFLIP--FQSIQEQEKEFIPQSGISVEIPINGIFRRNSI 612

Query: 492  LAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEV 551
             A+FDDP+YR +SSGI KY T+   SI QKED+IEYRG+++ K KY++KVDRFFFIP+EV
Sbjct: 613  FAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKYEMKVDRFFFIPEEV 672

Query: 552  HILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEID 611
            HIL ESS+IMV+N SIIGV+T +TLN +S+VGGL+RVEK KK+IELKIFSGDIHFP + D
Sbjct: 673  HILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKIFSGDIHFPDKTD 732

Query: 612  KISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINL 671
            KIS+HS ILIPP   KK   +  KK  NW Y+Q IT TKKK+FVLVRPV  Y+IADSINL
Sbjct: 733  KISRHSGILIPPGRGKKN-SKESKKFKNWIYVQRITPTKKKFFVLVRPVATYEIADSINL 791

Query: 672  VKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIE 731
              LFPQDLF+E DN++L+V N+ILYGNGK  RGI DTSIQLVRTCLVLNW   +K+SS+E
Sbjct: 792  ATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNW---DKNSSLE 848

Query: 732  EALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIY 791
            E  A FVEVST GLI+ F+RI LVKSHISYIRKRN+   SGLIS +     ++NPF+SI 
Sbjct: 849  EVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISAD-----HMNPFYSIS 903

Query: 792  KEN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQF 849
             ++  +QQSL Q HGTIRM LNRNKE++S +ILSSSNCF+MGPFN+VK+HN I + I   
Sbjct: 904  PKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKHHNVINQSI--- 960

Query: 850  KRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLM 909
            K+N  I IK S GPLG A  I+NF+SF  L+T+N+IS I K  QL+  K  FQ I  YL+
Sbjct: 961  KKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLI-KYFQLDNLKYIFQKINSYLI 1019

Query: 910  DENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQFICENVCIVQTKN 965
            DEN  I   D Y+N++LNPF LNW F+H     NYCE+T  IISLGQF CENVCI   K 
Sbjct: 1020 DENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENVCI--AKK 1077

Query: 966  GPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDI 1025
             P+LKSGQV+ VQ D   IR A PYLATPGA +HGHY E+LYEGD LVTFIYEKSRSGDI
Sbjct: 1078 EPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDI 1137

Query: 1026 TQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            TQGLPKVEQVLEVRSIDSIS+NLEKRI  WN+ IT ILGIPW   I     ++Q  IS
Sbjct: 1138 TQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRIS 1195


>UniRef100_Q9MTM3 DNA-directed RNA polymerase beta'' chain [Oenothera hookeri]
          Length = 1386

 Score = 1176 bits (3042), Expect = 0.0
 Identities = 612/963 (63%), Positives = 736/963 (75%), Gaps = 52/963 (5%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IYIGSRCI +RNQDIGIGL+NRFI F  QPI IRTPFT R+ SWICRLCYGRSP HGDLV
Sbjct: 251  IYIGSRCIAIRNQDIGIGLVNRFITFGIQPISIRTPFTGRSPSWICRLCYGRSPTHGDLV 310

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSA--YPT 276
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFN N A  +P 
Sbjct: 311  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNFNEALVHPA 370

Query: 277  RTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTL 336
            RTRHGHPA LC +DL VTIES DI+HN+ IPPKSFLLVQN+QYV+SEQ+IAEI AGT T 
Sbjct: 371  RTRHGHPALLCSMDLDVTIESEDILHNLTIPPKSFLLVQNNQYVESEQVIAEICAGTSTF 430

Query: 337  NLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLS 396
            + KE++RKHI+SDSEGEMHWST++YH  EF YSNVH+LPKTSHLWILSG S +S     S
Sbjct: 431  HFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGGSCRSRGAPFS 490

Query: 397  LLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR---------------------------LC 429
            L KDQDQM+  S    +R  S+   +N+Q+R                           +C
Sbjct: 491  LHKDQDQMNPRSTERERRYLSSLSANNDQIRYKFFSSSFSGKKKDDRESWFISEMNRIIC 550

Query: 430  PDHCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD--ISVEIPIDGIIH 487
              HC+ ++P+I  + S+LLAK+RRNR +IP   +S +ER  EL+P   IS+E+PI+GI  
Sbjct: 551  TLHCNLIYPSILRENSDLLAKRRRNRLVIPV--QSSQEREKELIPHSGISIELPINGIFR 608

Query: 488  KNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFI 547
            K SILA+FDDP+YRT+SSGI +Y+T+G+HSI +KE L++YRGI EFKPKYQ+ +DRFFFI
Sbjct: 609  KKSILAFFDDPRYRTKSSGITQYETMGMHSIVKKEGLVDYRGINEFKPKYQMTIDRFFFI 668

Query: 548  PQEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFP 607
            P+EVHIL ESSSIMVRNNS+IGV+T I LN +SR GGLVRVE+ K+ I L+IFSG IHFP
Sbjct: 669  PEEVHILPESSSIMVRNNSLIGVDTRIALNTRSRAGGLVRVERKKRGIALQIFSGTIHFP 728

Query: 608  GEIDKISQHSAILIPPEMVKKKILRNQKKKTNWR---YIQWITTTKKKYFVLVRPVILYD 664
            GE DKIS  S ILIPP   K    RN K+   W+   Y+Q IT TKKK+FVL RPV+ Y+
Sbjct: 729  GETDKISWDSGILIPPGTGK----RNSKESKKWKNGIYVQRITPTKKKHFVLFRPVVTYE 784

Query: 665  IADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 724
            IAD +NL +LFP DL +E DN++L+++N+I+YGNGK IR I DTSIQLVRT  +LNW++D
Sbjct: 785  IADGLNLARLFPPDLCQEKDNMQLQIVNYIVYGNGKPIREISDTSIQLVRTWFILNWDQD 844

Query: 725  EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 784
            +KS+S E A ASFVEV   GLIR FLRIDLVKS I   RKRNDPS SGLIS N SD  NI
Sbjct: 845  KKSASAEAAHASFVEVRAKGLIRDFLRIDLVKSPILDPRKRNDPSGSGLISDNVSDHTNI 904

Query: 785  NPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKE 844
            NPF+S  K  ++QS  Q HGTIR LLN+NKE  S +ILS+SN F+MGPFN+VK  N IKE
Sbjct: 905  NPFYS--KPKMKQSPRQNHGTIRTLLNQNKECPSLMILSASNWFRMGPFNDVKSQNVIKE 962

Query: 845  EINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI 904
             I   K++  I I+ S+GPLG A Q+ NF SFY+ ITHN++  + K LQ+   K+TFQV+
Sbjct: 963  SI---KKDAIIQIRNSIGPLGTALQVVNFDSFYYFITHNQV-LLTKYLQVENLKQTFQVL 1018

Query: 905  KYYLMDENERIYKPDLYNNIILNPFHLNWDFI-HPNY---CEKTFPIISLGQFICENVCI 960
            +YYLMDE+ RIY PD  +NI+LN F+L+W F+ H NY   CE+   I+SLGQFICEN CI
Sbjct: 1019 QYYLMDESGRIYNPDPRSNIVLNSFNLSWYFLPHNNYENSCEEISTIVSLGQFICENGCI 1078

Query: 961  VQTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKS 1020
               KNGP L+SGQV+ VQ+D V IR A PYLATPGAT+HGHYGE+LY+GD +VTF+YEKS
Sbjct: 1079 --AKNGPYLRSGQVLIVQLDSVVIRSAKPYLATPGATVHGHYGEILYDGDTVVTFLYEKS 1136

Query: 1021 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQD 1080
            RSGDITQGLPKVEQVLEVRS+DSIS+NLEKR++ WNE IT ILG PW   I     ++Q 
Sbjct: 1137 RSGDITQGLPKVEQVLEVRSVDSISVNLEKRVENWNEHITRILGFPWGFLIGAELTIVQS 1196

Query: 1081 NIS 1083
             IS
Sbjct: 1197 RIS 1199


>UniRef100_Q9THV5 DNA-directed RNA polymerase beta'' chain [Sinapis alba]
          Length = 1384

 Score = 1151 bits (2978), Expect = 0.0
 Identities = 609/957 (63%), Positives = 714/957 (73%), Gaps = 44/957 (4%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IYIGSRC+  RNQD+GIGL+NRFI F TQPI IRTPFTCR+TSWICRLCYGRSP HGDLV
Sbjct: 259  IYIGSRCVAFRNQDLGIGLVNRFITFGTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLV 318

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+P NGKIKFNE+  + TRT
Sbjct: 319  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHSTRT 378

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLCYIDL V IES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIR GTYT   
Sbjct: 379  RHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQVIAEIREGTYTFQF 438

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KE++RK+I+SDSEG MHWST++ H  EF YSNVH+LPKTSHLWILSG S  S  +  S+ 
Sbjct: 439  KERVRKYIYSDSEGGMHWSTDVSHAPEFTYSNVHLLPKTSHLWILSGGSCGSSLILFSIH 498

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVR-------------LCPD-----------HCH 434
            KDQDQM+   L   +++ S+  V+N+QV              L P+           H +
Sbjct: 499  KDQDQMNIPFLSVERKSISSLSVNNDQVSQKFFSSDFSDKKILIPNYSELNGIVGTSHYN 558

Query: 435  FMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP--DISVEIPIDGIIHKNSIL 492
            F++  I  + S+LLAK+RRNRF+IPF     +E+  E +P   ISVEIPI+GI  +NSI 
Sbjct: 559  FIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEQEKEFIPHSGISVEIPINGIFRRNSIF 618

Query: 493  AYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVH 552
            A+FDDP+YR +SSGI KY T+   SI QKED+IEYRG+++FK KY++KVDRFFFIP+EVH
Sbjct: 619  AFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYEMKVDRFFFIPEEVH 678

Query: 553  ILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDK 612
            IL ESS+IMV N SIIGV+T ITLN +S+VGGL+RVE+ KK+IELKIFSGDIHFP + DK
Sbjct: 679  ILPESSAIMVENYSIIGVDTRITLNIRSQVGGLIRVERKKKRIELKIFSGDIHFPDKTDK 738

Query: 613  ISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLV 672
            IS+HS ILIPP   K    +  K   NW Y+Q IT TKKK+FVLVRPV  Y+IADSINL 
Sbjct: 739  ISRHSGILIPPGRGKTN-SKESKIVKNWIYVQRITPTKKKFFVLVRPVATYEIADSINLA 797

Query: 673  KLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEE 732
             LFP+DLF+E DN++L+V N+ILYGNGK  RGI DTSIQLVRTCLVLNW++D K+SS+EE
Sbjct: 798  TLFPKDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLNWDQDNKNSSLEE 857

Query: 733  ALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYK 792
              A FVEV+T GLIR F+RI LVKSHISYIRKRN+PSS       E    ++NPF+SI  
Sbjct: 858  VRAFFVEVNTKGLIRDFIRIGLVKSHISYIRKRNNPSS----EKKEGSDHSMNPFYSISP 913

Query: 793  EN--IQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFK 850
            +   + QSL Q HGTIRM LNRN+ N   +ILSSSNCF++GPFN+VKYHN I + I +  
Sbjct: 914  KAGILHQSLRQNHGTIRMFLNRNR-NPILLILSSSNCFRIGPFNHVKYHNVINQSIKKKT 972

Query: 851  RNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMD 910
             N+   IK    P G A QI  F  F      N+IS I K L L      F VI  YL+D
Sbjct: 973  SNY---IKNCRAPYGTAIQILIFIHFAFTKLINQISCI-KYLHLQTSNVFFPVIHSYLID 1028

Query: 911  ENERIYKPDLYNNIILNPFHLNWDFIHP----NYCEKTFPIISLGQFICENVCIVQTKNG 966
            EN RI+  D Y+N++LNPF LNW F+H     NYCE+T  IISLGQF CENVCI   K  
Sbjct: 1029 ENGRIFNLDPYSNLVLNPFKLNWYFLHQNYNNNYCEETSTIISLGQFFCENVCI--AKKE 1086

Query: 967  PNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDIT 1026
            P LKSGQV+ VQ D V IR A PYLATPGA +HGHY E+LYEGD LVTFIYEKSRSGDIT
Sbjct: 1087 PYLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDIT 1146

Query: 1027 QGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            QGLPKVEQVLEVRSIDSIS+NLEKRI  WN  IT ILGIPW   I     ++Q  IS
Sbjct: 1147 QGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCITRILGIPWGFLIGAELTIVQSRIS 1203


>UniRef100_P60289 DNA-directed RNA polymerase beta'' chain [Amborella trichopoda]
          Length = 1373

 Score = 1145 bits (2963), Expect = 0.0
 Identities = 609/953 (63%), Positives = 717/953 (74%), Gaps = 45/953 (4%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            +Y+G RCI  RNQDIGIGL+NRFI  + QPI+IR+PFTCR+TSWIC+LCYGRS  HG+LV
Sbjct: 258  VYMGLRCIATRNQDIGIGLVNRFITSRAQPIYIRSPFTCRSTSWICQLCYGRSTTHGNLV 317

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGG AE+VR+PSNGKIKFNE+  +PTRT
Sbjct: 318  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGIAEHVRAPSNGKIKFNEDLVHPTRT 377

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLC+IDL+VTIES DI+H V IPPKSFLLVQNDQYV+SEQ+IAEIRAGT TL  
Sbjct: 378  RHGHPAFLCHIDLHVTIESQDIIHKVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTL-- 435

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KE+++KHI+SDSEGEMHWST++YH  E+ + NVH+LPKTSHLW+LSG+  +S  V   L 
Sbjct: 436  KERVQKHIYSDSEGEMHWSTDVYHTPEYTHGNVHLLPKTSHLWVLSGSPCRSSIVPFPLH 495

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVR----------------------LCPDHCHFM 436
            KDQDQM+  SL   +R  S+  ++N++VR                      +   +   +
Sbjct: 496  KDQDQMNVQSLYVEERYISDLSMNNDRVRHKLFGWDQKRGRVSYYSGPDRIISNRNWDSI 555

Query: 437  HPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPD-ISVEIPIDGIIHKNSILAYF 495
            +P I  + S+LLAK+RRNRFIIPF +   +E+  EL P  I ++IPI GI+ +NSILAYF
Sbjct: 556  YPLILHENSDLLAKRRRNRFIIPFQYD--QEQEKELRPPGIVIKIPIKGILRRNSILAYF 613

Query: 496  DDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQI--KVDRFFFIPQEVHI 553
            DDP+YR  SSGIAKY TI + SI +KEDLIEYR  REF PKYQI  KV+RFFFIP+EVHI
Sbjct: 614  DDPRYRRSSSGIAKYGTIEVDSIIKKEDLIEYRKTREFGPKYQIQIKVNRFFFIPEEVHI 673

Query: 554  LSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKI 613
            L  SSSIMVRNNSIIGV+T ITLN +S+VGGLVRVEK KK+IELKI SGDIHFPGE D I
Sbjct: 674  LPRSSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVEKKKKRIELKISSGDIHFPGETDNI 733

Query: 614  SQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVK 673
            +++S ILIPP  VK      + K  NW Y+Q IT  KKKYFV VRPV+ Y+IAD INL  
Sbjct: 734  ARYSGILIPPGRVKN----TESKFKNWIYVQRITPIKKKYFVSVRPVVTYEIADGINLAT 789

Query: 674  LFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSS-SIEE 732
             FPQDL +E +NL+L+V+N+ILYG+GK IRGI  TSIQLVRTCLVLNW++D   S   EE
Sbjct: 790  FFPQDLLQEKNNLQLRVVNYILYGDGKPIRGIFHTSIQLVRTCLVLNWDQDRAGSIEEEE 849

Query: 733  ALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYK 792
            A  S  EV  N LIR F+RIDLVKS IS   K ND + SGLI  N SDRIN NPFFS  K
Sbjct: 850  AYTSLAEVRVNDLIRNFIRIDLVKSPISSTGKENDMAGSGLIPNNGSDRINTNPFFSKAK 909

Query: 793  ENIQQSLSQKHGTIRMLLNRNKENR--SFIILSSSNCFQMGPFNNVKYHNGIKEEINQFK 850
                QSLSQ  GTIR LLNRNKE +  S ++LSSSNC ++GP N  KYHN  KE I +  
Sbjct: 910  T---QSLSQHQGTIRTLLNRNKEGQGESLMVLSSSNCSRIGPLNGSKYHNVTKESIQE-- 964

Query: 851  RNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMD 910
             +  I I+ SLGPLG  P I NF S YH ITHN+I    K L  +  +ETF V K Y MD
Sbjct: 965  -DPMISIRNSLGPLGTVPNILNFSSSYHSITHNEIL-FNKYLLPDNSRETFLVPKSYFMD 1022

Query: 911  ENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLK 970
            EN RIY  D  +NIIL PF+LNW F+H +Y E T  IISLGQF+CEN+CI  +K+GP +K
Sbjct: 1023 ENRRIYNLDPCSNIILTPFNLNWCFLHHDYWEDTSTIISLGQFLCENICI--SKDGPCVK 1080

Query: 971  SGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLP 1030
            SGQ+I V +D + IRLA  +LAT GAT+HGHYGE+LYEGD LVTFIYEKSRSGDITQGLP
Sbjct: 1081 SGQIIIVHVDSLVIRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLP 1140

Query: 1031 KVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            KVEQVLEVRSIDSISMNLEKR++ WNERITG LGIPW   IS    ++Q  IS
Sbjct: 1141 KVEQVLEVRSIDSISMNLEKRVEGWNERITGFLGIPWEFFISAQLTIVQSRIS 1193


>UniRef100_Q6EW58 RNA polymerase beta' subunit-2 [Nymphaea alba]
          Length = 1401

 Score = 1100 bits (2845), Expect = 0.0
 Identities = 600/962 (62%), Positives = 702/962 (72%), Gaps = 54/962 (5%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            +Y+G RCI  RNQDIGIGL+NRF+  + QPI+IRTPFTCR+ SWICRLCYGRSP HGDLV
Sbjct: 256  VYLGLRCIATRNQDIGIGLVNRFMTSRAQPIYIRTPFTCRSASWICRLCYGRSPTHGDLV 315

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTAE+VR+PSNGKIKFNE+  +PTRT
Sbjct: 316  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRT 375

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPAFLCY+DLYVTIES DI+H+V IPPKSFLLVQNDQYV+SEQ+IAEIRAGT T + 
Sbjct: 376  RHGHPAFLCYVDLYVTIESQDIIHSVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTFHF 435

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KE++RKHI+SDSEGEMHWST +YH  E+ + NVH LPKTSHLWILSG   KS  V  SL 
Sbjct: 436  KERVRKHIYSDSEGEMHWSTGVYHAPEYTHGNVHFLPKTSHLWILSGGPCKSSLVPFSLH 495

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQV--------------RLCPDHC----------- 433
            KDQDQM+  SL   +R+ S+F V+NN+V              R   D+            
Sbjct: 496  KDQDQMNVQSLSVQERSISDFSVNNNRVKHKLFGSDPLARKGRRISDYAAGSERVISNGD 555

Query: 434  -HFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMP----DISVEIPIDGIIHK 488
              F++P I  + S LLAK+RRNRFIIPF +    E   EL P     I+VEIP +GI+ +
Sbjct: 556  GDFIYPAILRENSYLLAKRRRNRFIIPFQYDP--EWEKELTPHSSTSITVEIPANGILRR 613

Query: 489  NSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIP 548
            NSILAYFDDP+YR  SSGI KY  I + SI +KE L+EYR  +E +PKYQ+KVDRFF IP
Sbjct: 614  NSILAYFDDPRYRRSSSGITKYGIIEVDSIVKKEGLVEYRRPKESRPKYQMKVDRFFVIP 673

Query: 549  QEVHILSESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPG 608
            +EVHIL  SSSIMVRNNSIIGV+T IT N +S++GGLVR+EK KKKIELKIFSG IHFPG
Sbjct: 674  EEVHILPGSSSIMVRNNSIIGVDTRITFNTRSQIGGLVRIEK-KKKIELKIFSGGIHFPG 732

Query: 609  EIDKISQHSAILIPPEMVKKKILRNQKKK----TNWRYIQWITTTKKKYFVLVRPVILYD 664
            E DKIS+H  ILIPP   +KK+ +  K K     NW Y+Q IT  KKKYFV VRPV+ Y+
Sbjct: 733  ETDKISRHIGILIPPG-ARKKMDKGSKGKNWEGNNWVYVQRITPIKKKYFVSVRPVVTYE 791

Query: 665  IADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNED 724
            IAD INLV LFP D+ +E DNL L+V+N+ILYG+GK IRGI  TSIQLVRTCLVLNW++D
Sbjct: 792  IADGINLVTLFPGDMLQEKDNLRLQVVNYILYGDGKPIRGISHTSIQLVRTCLVLNWDQD 851

Query: 725  EKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRINI 784
            +K  SIE+  AS  EV  N LIRYF+RIDLVKS I Y  KRND S S +I    S   N 
Sbjct: 852  KK-GSIEKVQASSAEVRANDLIRYFIRIDLVKSPILYTGKRNDRSGS-VIPDTGSYCANT 909

Query: 785  NPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKE 844
            N F S  K    +SLSQ  GT+R  LNRNKE +S I+ SSSNC ++   N  KYHN  KE
Sbjct: 910  NLFSSKVK---IKSLSQHQGTVRTFLNRNKEGQSLIVFSSSNCSRI---NVSKYHNVTKE 963

Query: 845  EINQFKRNHKIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKF-KETFQV 903
             I + K +  IPI   LGPLG  P+I NF   YH ITHN+I   K  +  NK  K+TFQ+
Sbjct: 964  SIKE-KEDTPIPILNLLGPLGTVPKIHNFSPSYHSITHNEILLNKYLILDNKNPKQTFQL 1022

Query: 904  IKYYLMDENERIYKPDLYNNIILNPFHLNWDFIHPNYCE--KTFPIISLGQFICENVCIV 961
            +KYYL+DEN RI   +  ++II N F     F+  +YCE   T  IISLGQFICENVC+ 
Sbjct: 1023 LKYYLVDENGRISNANPCSDIIFNLF--GSCFLPHDYCEGTSTTRIISLGQFICENVCL- 1079

Query: 962  QTKNGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSR 1021
             +K+G  +KSGQVI V +D   IR A PYLAT GAT+HG YGE+ YEGD LVTFIYEKSR
Sbjct: 1080 -SKHGTRIKSGQVIMVYLDSFIIRSAKPYLATRGATVHGDYGEIFYEGDTLVTFIYEKSR 1138

Query: 1022 SGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDN 1081
            SGDIT GLPKVEQVLEVRSIDSISMNLEKR++ WNE ITGILGIPW   I     + Q  
Sbjct: 1139 SGDITHGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITGILGIPWGFLIGAELTIAQSR 1198

Query: 1082 IS 1083
            +S
Sbjct: 1199 VS 1200


>UniRef100_P06274 DNA-directed RNA polymerase beta'' chain [Marchantia polymorpha]
          Length = 1386

 Score =  681 bits (1758), Expect = 0.0
 Identities = 411/989 (41%), Positives = 600/989 (60%), Gaps = 83/989 (8%)

Query: 139  NDVRKNFDTNINWSCISRRYIYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCR 198
            ++ + NF   +    I+   IYI  RCI  RNQDIG  L NR I  +T+ IF+R+P TC+
Sbjct: 232  SEKKNNFQQKLIGRVIAEN-IYIDHRCIAPRNQDIGALLANRLITLKTKQIFLRSPLTCK 290

Query: 199  NTSWICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYV 258
            + +WIC+LCYG S  HG+L+E+GEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG  AE+V
Sbjct: 291  SMNWICQLCYGWSLSHGNLIEMGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHV 350

Query: 259  RSPSNGKIKFNENSAYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQ 318
            R+P NG I+FNEN  YPTRTRHGHPA++C+ +L++ I+S + +HN+ IPPKS LLVQN+Q
Sbjct: 351  RTPFNGIIEFNENFVYPTRTRHGHPAWMCHTNLFLVIKSKNKVHNLTIPPKSLLLVQNNQ 410

Query: 319  YVKSEQIIAEIRAGTYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTS 378
            YV+S+Q+IAEIRA T     KEK++K+I+S+ EGEMHWST + H SE+ +SN+H++ KT 
Sbjct: 411  YVESKQVIAEIRAKTSP--FKEKVQKYIYSNLEGEMHWSTKVRHASEYIHSNIHLILKTC 468

Query: 379  HLWILSGNSH-KSDTVSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCH--- 434
            H+WILSGN H K++ +S+   K+QD++      T ++N  +F+ +  Q+ L   H +   
Sbjct: 469  HIWILSGNFHKKNNDLSVLFYKNQDKIDFPISLTKEKNEFSFVKNKTQLNLFLFHFYLYK 528

Query: 435  ----FMHPTISPDTSNLLAKKRRNRFIIP---------FLFRSIRERNNELMPDISVEIP 481
                F+   ++ +  N +   +   FI+          F F     +N  L   + ++I 
Sbjct: 529  KNKIFIKSQLTNNILNKINNSKNYNFILQEYNIKKKKNFYFL----KNKNLTCPLFLKIK 584

Query: 482  IDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQ-IK 540
             +G++  N I A  DDP Y+ ++SGI KY  I +  I Q  +  E    + F+P+Y  IK
Sbjct: 585  KNGVLKNNEIFAILDDPSYKVKNSGILKYGNIKVDLINQNTN-FEDPQTKLFRPRYSIIK 643

Query: 541  VDRFFFIPQEVHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKKIELK 598
               FFFIP+EV++L++S SS+ ++NN  I   T IT N +S   GLV+++ K     ELK
Sbjct: 644  EGNFFFIPEEVYVLTQSLSSVFIKNNKFIQAGTLITSNIRSNTNGLVKIQKKGNNNYELK 703

Query: 599  IFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVR 658
            I  G I++P E  KIS+  +ILIPP     K L N+ +  NW Y+QWI  +K+K FVL+R
Sbjct: 704  ILPGTIYYPNETYKISKQISILIPP----GKKLFNEFECKNWTYLQWIMPSKEKPFVLIR 759

Query: 659  PVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLV 718
            P + Y I+  +N   LF  DL K+   +E+K +N++LY + + I+ I + +IQL++TCL+
Sbjct: 760  PAVEYKISKKLNKSTLF--DLLKKNKKVEIKTINYLLYEDDEQIQIINEKNIQLIQTCLL 817

Query: 719  LNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNE 778
            ++W   +K    +EA  SF+++ T    + FL+I L++ + +  +K+    S  ++  N 
Sbjct: 818  VHW---KKKYFFKEANVSFLKIKTKNNFKTFLQISLIE-YSNLEKKKEKTISKNVLKKNY 873

Query: 779  SDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKY 838
             D      FFSI K  ++   ++K G IR++ N+N   +SFIILSSS+  +   F  +  
Sbjct: 874  YDH-----FFSISKNELK---NKKQGVIRIISNQNNGMQSFIILSSSDLVKTFKFKKLTK 925

Query: 839  HNGIKEEIN-------QFKRNHKIPIK------------------ISLGPLGVAPQI-AN 872
            +  IK   N       +F +N KI  K                    LG LG    I  N
Sbjct: 926  NISIKTNTNTSTAKFFEFNKNFKILNKKKKLNLTKKNFSIGLLLFKKLGFLGNLHNIVTN 985

Query: 873  FFSFYHLITHNKISSIKKNLQLNKFKETFQVIKYYLMDENERIYKPDLYNNIILNPFHLN 932
             FS ++LI + K+ S K ++ + KF+ T Q  K+YL+DE+++I K  L  +I  N F  N
Sbjct: 986  SFSSFYLINYTKLISNKYSI-ITKFQHTCQNPKWYLIDESKKINKLILGKHINYNLF--N 1042

Query: 933  WDFIHPNYCEK--TFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVGIRLANPY 990
            W F   +  +K   F  I LGQ + EN  I + K   +  SGQ+I++ +++  IRLA PY
Sbjct: 1043 WCFPLFSLLKKKIDFQTIKLGQLLFENFVISKYKT--SYPSGQIISININYFIIRLAKPY 1100

Query: 991  LATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1050
            LAT GATIH +YGE + EGD L+T IYE+ +SGDI QGLPKVEQ+LE R I+S+S+NLE 
Sbjct: 1101 LATGGATIHNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLEN 1160

Query: 1051 RIDAWNERITGILGIPW----SRKISMSR 1075
              + WN  +   +G  W    S KISM +
Sbjct: 1161 GFEDWNNDMIKFIGNLWGFFLSTKISMEQ 1189


>UniRef100_P60290 DNA-directed RNA polymerase beta'' chain [Physcomitrella patens]
          Length = 1330

 Score =  639 bits (1649), Expect = 0.0
 Identities = 378/952 (39%), Positives = 561/952 (58%), Gaps = 71/952 (7%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLV 218
            IYI  RCI +RNQDI   L+   INFQ + IFIR+P  C++  WIC+LCYG S  HG+L+
Sbjct: 244  IYINGRCIAIRNQDITTNLVISLINFQRKGIFIRSPLICKSMLWICQLCYGWSLTHGNLI 303

Query: 219  ELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTRT 278
            ELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG  AE++R+P NG I+F+ NS YPTRT
Sbjct: 304  ELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHIRTPFNGIIQFDTNSVYPTRT 363

Query: 279  RHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLNL 338
            RHGHPA++C  +L V I+S   +HN++IP +S LLVQ++QYV+S+Q+IAE+RA T     
Sbjct: 364  RHGHPAWICNNNLSVVIKSKKKLHNLVIPTQSLLLVQSNQYVESKQVIAEVRAKTSP--F 421

Query: 339  KEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSLL 398
            KEK++K+I+S+  GEMHWS+ + H SE+ +SNVH+L KT H+WIL+GN  K +  S    
Sbjct: 422  KEKVQKYIYSNLSGEMHWSSKVQHSSEYIHSNVHLLRKTGHIWILAGNFDKDNKFSFIFY 481

Query: 399  KDQDQMSTHSLPTAKRNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLAKKRRNRFII 458
            ++QD++  + LP AK+  + F +            HF++   +   S+++    R     
Sbjct: 482  QNQDKLD-NKLPIAKQTLNYFQLKE----------HFLNNFWNSIYSSIILYNYR----- 525

Query: 459  PFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYRTQSSGIAKYKTIGIHSI 518
             FL +   +   +L+    +++P +GI+ +N I A F+DP+YR ++SGI KY  I +  I
Sbjct: 526  -FLEKKNNKYEKKLLFQFMLKLPKNGILKQNDIFAIFNDPKYRIKNSGIIKYGNIKVDLI 584

Query: 519  FQKEDLIEYRGIREFKPKYQI-KVDRFFFIPQEVHILSES--SSIMVRNNSIIGVNTPIT 575
             +K D+ E +  +  +P+Y+I K   FF +P+EV+IL +S  SSI+V+NNS I   T IT
Sbjct: 585  NKKNDIFEDQKTKTVRPRYKILKEGNFFLLPEEVYILDQSSFSSILVKNNSFIKAGTKIT 644

Query: 576  LNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQK 635
             N  S++ G V+++K     ++KI  G I++P E  K  + + ILIPP    +KI    +
Sbjct: 645  FNISSKITGFVKIKKKFNNFKIKILPGSIYYPKEKQKNFKQNGILIPP---GEKIFEQFR 701

Query: 636  KKTNWRYIQWITTTKKKYFVLVRPVILYDIADSINLVKL---FPQDLFKEWDNLELKVLN 692
             K NW Y++WI  +K   F L+RP I Y I  + N + L   F  DL KE   ++++ + 
Sbjct: 702  AK-NWIYLEWIVLSKDNSFFLIRPAIEYKIIFNDNPLTLPIPFYLDLLKEQKKIKIQTVK 760

Query: 693  FILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRI 752
            +ILY + + +    DT IQL++TCL+LNW   E    I+EA  SF+++  N +I+ F +I
Sbjct: 761  YILYEDSEEVEINPDTDIQLIQTCLILNW---ETKVFIKEAHISFIKIRINKIIKNFFQI 817

Query: 753  DLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQS-------LSQKHGT 805
            +L++             +  L++  +++ I +N  F   +  I Q        LS+  G 
Sbjct: 818  NLIE-------------NINLMNKKKNNNIILNYLFKKKRYIINQKDCEKILLLSKTWGI 864

Query: 806  IRMLLNRNKENRSFIILSSSNCFQMGPFN----NVKYHNGI--------KEEINQFKRNH 853
            IR   N+N+E   F+ILS  N FQ   F+    N+K  N +        K+ I  F    
Sbjct: 865  IRTPSNKNQEKSFFLILSPFNLFQTILFDKTKQNLKIENNVEKLFTYEPKKIIKTFNIEK 924

Query: 854  KIPIKISLGPLGVAPQIANFFSFYHLITHNKISSIKKNLQ-LNKFKETFQVIKYYLMDEN 912
            +      LG LG    I   F  +     +   SI  N   ++  K+  ++ K++ ++EN
Sbjct: 925  RKNFVEFLGLLGYLQNITKSFQLFSCKKFSD-KSIPINFSIIDNLKKKIKISKWFFLNEN 983

Query: 913  ERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSG 972
            +++ K  L  N IL+   LNW F   +  +K   + +LG F C+ + I +       +SG
Sbjct: 984  KKVQKFFLTQNTILS--LLNWSFPIFDLAKKKTQLFNLGHFFCDGLSIAEYPTFS--ESG 1039

Query: 973  QVITVQMDF-VGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPK 1031
            Q+I +  D  + IRLA PYLAT GA IH +YGE++ EGDIL+T IYE+ +SGDI QGLPK
Sbjct: 1040 QIIAIYDDLSLVIRLAKPYLATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPK 1099

Query: 1032 VEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            VEQ+LE R  + +S+NLEK    WN+ +T   G  W   +S    + Q  ++
Sbjct: 1100 VEQLLEARLTNPVSINLEKGFGEWNKDMTNFFGSLWGYFLSAQISMEQSQVN 1151


>UniRef100_Q85C71 DNA-directed RNA polymerase beta'' chain [Anthoceros formosae]
          Length = 1445

 Score =  630 bits (1626), Expect = e-179
 Identities = 393/1019 (38%), Positives = 577/1019 (56%), Gaps = 117/1019 (11%)

Query: 159  IYIGSRCIVVRNQDIGIGLINRFINFQTQPIFIRTPFTCRNTSWICRLCYGRSPIH-GDL 217
            +YI +RC+ +RNQDI   LI + I  +T  I IR+P TC++  WIC+LCYG S  H GDL
Sbjct: 255  LYINARCLAIRNQDINTNLIEKLITLKTPLISIRSPLTCKSMLWICQLCYGWSLTHYGDL 314

Query: 218  VELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENSAYPTR 277
            VELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTG  AE+VR+P NG I+F+ +  YPTR
Sbjct: 315  VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAEHVRTPFNGTIEFDTDLVYPTR 374

Query: 278  TRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAGTYTLN 337
            TRHGHPA++C  DL VTI+S + +HN+IIP +S LL+QN+QYV+S+Q+IAE+ A      
Sbjct: 375  TRHGHPAWVCRTDLAVTIKSQNKIHNLIIPSQSLLLIQNNQYVESKQLIAEVHAKVSPF- 433

Query: 338  LKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDTVSLSL 397
             KEK++K+I+ + EGEMHWS  + H S++ +SNVH++  T HLWILSG+SH+  T S+  
Sbjct: 434  -KEKVQKYIYCNIEGEMHWSKRVRHASKYLHSNVHLIFNTGHLWILSGSSHEDKTSSM-F 491

Query: 398  LKDQDQMSTHSL---------------------PTAKRNTSNFLVSNNQVRLCPDHCHFM 436
             K+QDQ++T                        P  ++       SN  + +     +F+
Sbjct: 492  FKNQDQINTKFFISPRKILFMKKTNQVNSKNLDPYLEKEMETLNYSNLYLGILNKSRNFV 551

Query: 437  HPTI---SPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILA 493
            +P+I     +   +  +K+   F++  L     E+  ++     + IP  GI+    I A
Sbjct: 552  YPSIILHDYEVKRIYDEKKGENFLL--LEERHGEKKTQIFRRFVLNIPKSGILENKDIFA 609

Query: 494  YFDDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRG--IREFKPKYQ-IKVDRFFFIPQE 550
              +DP Y  QS GI KY TI ++ I  K +  + R   I   +P+YQ I+   FF IP+E
Sbjct: 610  ISNDPGYGIQSPGIIKYGTIKVNPIKGKGETFKNRETKILRLRPRYQVIEPGNFFPIPEE 669

Query: 551  VHILSES-SSIMVRNNSIIGVNTPITLNKKSRVGGLVRVE-KNKKKIELKIFSGDIHFPG 608
            VHIL ES   I+VRN+S+I  NT IT + +S+VGGLVR+  K     E+K+  G ++ P 
Sbjct: 670  VHILYESFPPILVRNDSLIKKNTQITSDIRSQVGGLVRIRRKMNDSYEVKVLPGRVYHPE 729

Query: 609  EIDKISQHSAILIPPEMVKKKILRNQKKKTNWRYIQWITTTKKKYFVLVRPVILYDIADS 668
            E   IS+ + IL+PP     + + N+ +  NW Y++WIT  K+K F+ +RP I + + + 
Sbjct: 730  ERRNISKQNDILVPPG----EEISNKFQSENWLYLEWITPPKEKPFIFIRPAIEFIVPEE 785

Query: 669  INLVKLFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSS 728
             +L + F  +  K+ + L++K + ++LY +G+ +     T IQL++T LVL+W ED   S
Sbjct: 786  TDLAETFTLNSQKKQEILKVKKIRYLLYEDGEEVEVTNKTGIQLIQTGLVLDWKED---S 842

Query: 729  SIEEALASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFF 788
            SI++  AS  E+ TNGL + FL+I L++  I  I K+ +  +   + Y  ++ IN    +
Sbjct: 843  SIKKVYASLTEIETNGLSKKFLQISLIEHPIFEIEKKKNNVN---LKYLFTNEIN----Y 895

Query: 789  SIYKENIQQSLSQKH-GTIRMLLNRNKENRSFIILSSSNCFQM----------------- 830
            S +  N +  L   + G IR+  N N+E++S  ILS  +  Q+                 
Sbjct: 896  SSHSFNYENGLFNGYRGIIRISSNENQEDKSLPILSPFDFVQIFLSKNSEEYTPEMKDEG 955

Query: 831  -------------------------------GPFNNVKY--HNGIKEEINQFK--RNHKI 855
                                           G F N ++  HN I +E N  K  RN  +
Sbjct: 956  NFNLDTNSIFYAKSFVKKFNQNSITSSQNSSGTFINKEFYNHNNINQEFNSRKIIRNFFL 1015

Query: 856  PIKIS---------LGPLGVAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVIKY 906
             I+ +         LG LG +  + + F F      +    I +   L   ++ FQV K+
Sbjct: 1016 SIERNFMEILLLRKLGLLGNSHSLPSPFQFSCWANTHNQPIINRYSILENLRDVFQVPKW 1075

Query: 907  YLMDENERIYKPDLYNNIILNPFHL-NWDF-IHPNYCEKTFPIISLGQFICENVCIVQTK 964
            Y  DEN++ +K DL  N I   +HL  W F I  +Y E    ++ LGQFICEN+ I  +K
Sbjct: 1076 YFFDENKKTHKLDLSKNSI---YHLLTWSFSIALSYEEGAIHLVGLGQFICENISI-SSK 1131

Query: 965  NGPNLKSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGD 1024
                 +SGQ+I +  +F+ +RLA P LAT GATIH HYG+++ +GD+L+T +YE+ +SGD
Sbjct: 1132 YQTISESGQIIAIHPEFLVVRLAKPSLATGGATIHSHYGQIIKKGDVLITLVYERLKSGD 1191

Query: 1025 ITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            I QGLPKVEQ+LE R I+S S+NLE   + WN  +T  LG  W   +S    + Q  I+
Sbjct: 1192 IIQGLPKVEQLLEARPINSTSINLENGFENWNRDMTKSLGSLWGFLLSAKTTMNQSQIN 1250


>UniRef100_Q6ENX1 RNA polymerase beta subunit [Saccharum officinarum]
          Length = 1534

 Score =  557 bits (1436), Expect = e-157
 Identities = 320/594 (53%), Positives = 403/594 (66%), Gaps = 28/594 (4%)

Query: 496  DDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILS 555
            +D +  ++     +Y +   +SI +KE  IE+RG +EF  KYQ +VDRFFFI QE+HIL 
Sbjct: 773  EDSEEDSEEDSEDEYGSPEENSILKKEGFIEHRGTKEFSLKYQKEVDRFFFILQELHILP 832

Query: 556  ESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQ 615
             SSS+ V +NSIIGV+T +T N +SR+GGLVRV++ K   ELKIFSGDIHFP E DKI  
Sbjct: 833  RSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILG 892

Query: 616  HSAILIPPEMVKKKILRNQKKKTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVK 673
             S  LIPPE  +KK  +  KK+ NW Y+Q   I  +K+KYFV VRP + Y++ +  NL  
Sbjct: 893  GS--LIPPER-EKKDSKESKKRKNWVYVQRKKILKSKEKYFVSVRPAVAYEMDEGRNLAT 949

Query: 674  LFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEA 733
            LFPQDL +E DNL+L+++NFI + N K  + I  T+ Q VRTCLV+NW ++EK    E A
Sbjct: 950  LFPQDLLQEEDNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EGA 1005

Query: 734  LASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKE 793
             AS VEV TN LIR FLRI+LVKS ISY R+R D +S GLI  N  DR N N F+S  K 
Sbjct: 1006 RASLVEVRTNDLIRDFLRIELVKSTISYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKI 1065

Query: 794  NIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNH 853
               QSLSQ    I  LLNRNKE  S +IL +SNC ++G F N KY N +KE       N 
Sbjct: 1066 ---QSLSQHQEVIGTLLNRNKEYPSLMILLASNCSRIGLFKNSKYPNAVKES------NP 1116

Query: 854  KIPIKISLGPLGV-APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLM 909
            +IPI+   G LGV  P I+NF S Y+L+THN+I  +KK L L+  K+TFQV+   KY L+
Sbjct: 1117 RIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQIL-LKKYLFLDNLKQTFQVLQGLKYSLI 1175

Query: 910  DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNL 969
            DEN+RI   D  +NI+L PFHLNW F+H +  E+T  II LGQFICEN+C+ ++      
Sbjct: 1176 DENKRISNFD--SNIMLEPFHLNWHFLHHDSWEETLAIIHLGQFICENLCLFKSHIK--- 1230

Query: 970  KSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGL 1029
            KSGQ+  V MD   +R A PYLAT GAT+HGHYG++LY+GD LVTFIYEKSRS DITQGL
Sbjct: 1231 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1290

Query: 1030 PKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            PKVEQ+ E RSIDS+S NLE+RI+ WNERI  ILG+PW   I     + Q  IS
Sbjct: 1291 PKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS 1344



 Score =  462 bits (1190), Expect = e-128
 Identities = 236/401 (58%), Positives = 294/401 (72%), Gaps = 32/401 (7%)

Query: 159 IYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNTSWICRLCYGRSP 212
           IYIGSRCI  RNQDIGIGL+NRFI       F+ QPI+IRTPFTCR+TSWIC+LCYGRSP
Sbjct: 252 IYIGSRCIASRNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSP 311

Query: 213 IHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENS 272
            HGDLVELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTA+ +RSPSNGKI+FNE+ 
Sbjct: 312 THGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLIRSPSNGKIQFNEDL 371

Query: 273 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 332
            +PTRTRHG PAFLCYIDL+VTI+S DI+H+V IP KS +LVQNDQYV+SEQ+IAEIRAG
Sbjct: 372 VHPTRTRHGQPAFLCYIDLHVTIQSQDILHSVNIPLKSLILVQNDQYVESEQVIAEIRAG 431

Query: 333 TYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 392
             TL+ KEK++KHI+S+S+GEMHWST++YH  E+ Y N+  LPKTSHLWILS +  +S  
Sbjct: 432 MSTLHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLWILSVSMCRSSI 491

Query: 393 VSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR-----------------LCPD---- 431
            S SL KDQDQM+T+S     R   +F ++N+QV                  L PD    
Sbjct: 492 ASFSLHKDQDQMNTYSFSVDGRYIFDFSMANDQVSHRLLDTFGKKDREILDYLTPDRIVS 551

Query: 432 --HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKN 489
             H +  +P+I  D S+LLAKKRRNRF++P  +   +E+       IS+EIP  G++ +N
Sbjct: 552 NGHWNCFYPSILQDNSDLLAKKRRNRFVVPLQYHQEQEKERISCLGISMEIPFMGVLRRN 611

Query: 490 SILAYFDDPQYR--TQSSGIAKYKTIGIHSIFQKEDLIEYR 528
           +I AYFDDP+YR   + SGI K++   +   ++ ++  EYR
Sbjct: 612 TIFAYFDDPRYRKDKRGSGIVKFRYRTLEEEYRTQE-EEYR 651


>UniRef100_P16025 DNA-directed RNA polymerase beta'' chain [Zea mays]
          Length = 1527

 Score =  553 bits (1424), Expect = e-155
 Identities = 318/594 (53%), Positives = 399/594 (66%), Gaps = 28/594 (4%)

Query: 496  DDPQYRTQSSGIAKYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILS 555
            +D +  ++     +Y +    SI +KE  IE+RG +EF  KYQ +VDRFFFI QE+HIL 
Sbjct: 766  EDSEEDSEEDSEDEYGSPEEDSILKKEGFIEHRGTKEFSLKYQKEVDRFFFILQELHILP 825

Query: 556  ESSSIMVRNNSIIGVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQ 615
             SSS+ V +NSIIGV+T +T N +SR+GGLVRV++ K   ELKIFSGDIHFP E DKI  
Sbjct: 826  RSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILG 885

Query: 616  HSAILIPPEMVKKKILRNQKKKTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVK 673
             S  LIPPE  +KK  +  KK+ NW Y+Q      +K+KYFV VRP + Y++ + INL  
Sbjct: 886  GS--LIPPER-EKKDSKESKKRKNWVYVQRKKFLKSKEKYFVSVRPAVAYEMDEGINLAT 942

Query: 674  LFPQDLFKEWDNLELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEA 733
            LFPQDL +E DNL+L+++NFI + N K  + I  T+ Q VRTCLV+NW ++EK    E A
Sbjct: 943  LFPQDLLQEEDNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EGA 998

Query: 734  LASFVEVSTNGLIRYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKE 793
             AS VEV TN LIR FLRI+LVKS I Y R+R D +S GLI  N  DR N N F+S  K 
Sbjct: 999  RASLVEVKTNDLIRDFLRIELVKSTILYTRRRYDRTSVGLIPNNRLDRNNTNSFYSKAKI 1058

Query: 794  NIQQSLSQKHGTIRMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNH 853
               QSLSQ    I  LLNRNKE  S +IL +SNC ++G F N KY N +KE       N 
Sbjct: 1059 ---QSLSQHQEVIGTLLNRNKEYPSLMILLASNCSRIGLFKNSKYPNAVKES------NP 1109

Query: 854  KIPIKISLGPLGV-APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLM 909
            +IPI+   G LGV  P I+NF S Y+L+THN+I  +KK L L+  K+T QV+   KY L+
Sbjct: 1110 RIPIRDIFGLLGVIVPSISNFSSSYYLLTHNQIL-LKKYLFLDNLKQTLQVLQGLKYSLI 1168

Query: 910  DENERIYKPDLYNNIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNL 969
            DEN+RI   D  +NI+L PFHLNW F+H +  E+T  II LGQFICEN+C+ +       
Sbjct: 1169 DENKRISNFD--SNIMLEPFHLNWHFLHHDSWEETLAIIHLGQFICENLCLFKLHIK--- 1223

Query: 970  KSGQVITVQMDFVGIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGL 1029
            KSGQ+  V MD   +R A PYLAT GAT+HGHYG++LY+GD LVTFIYEKSRS DITQGL
Sbjct: 1224 KSGQIFIVNMDSFVLRAAKPYLATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGL 1283

Query: 1030 PKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            PKVEQ+ E RSIDS+S NLE+RI+ WNERI  ILG+PW   I     + Q  IS
Sbjct: 1284 PKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS 1337



 Score =  462 bits (1190), Expect = e-128
 Identities = 236/401 (58%), Positives = 294/401 (72%), Gaps = 32/401 (7%)

Query: 159 IYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNTSWICRLCYGRSP 212
           IYIGSRCI  RNQDIGIGL+NRFI       F+ QPI+IRTPFTCR+TSWIC+LCYGRSP
Sbjct: 252 IYIGSRCIASRNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSP 311

Query: 213 IHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENS 272
            HGDLVELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTA+ +RSPSNGKI+FNE+ 
Sbjct: 312 THGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLIRSPSNGKIQFNEDL 371

Query: 273 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 332
            +PTRTRHG PAFLCYIDL+VTI+S DI+H+V IP KS +LVQNDQYV+SEQ+IAEIRAG
Sbjct: 372 VHPTRTRHGQPAFLCYIDLHVTIQSQDILHSVNIPLKSLILVQNDQYVESEQVIAEIRAG 431

Query: 333 TYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 392
           T TL+ KEK++KHI+S+S+GEMHWST++YH  E+ Y N+  LPKTSHLWILS +  +S  
Sbjct: 432 TSTLHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLWILSVSMCRSSI 491

Query: 393 VSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR-----------------LCPD---- 431
            S SL KDQDQM+T+S     R   +F ++N+QV                  L PD    
Sbjct: 492 ASFSLHKDQDQMNTYSFSVDGRYIFDFSMANDQVSHRLLDTFGKKDREILDYLTPDRIVF 551

Query: 432 --HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKN 489
             H +  +P+I  D S+LLAKKRRNR ++P  +   +E+       IS+EIP  G++ +N
Sbjct: 552 NGHWNCFYPSILQDNSDLLAKKRRNRLVVPLQYHQEQEKERISCLGISMEIPFMGVLRRN 611

Query: 490 SILAYFDDPQYR--TQSSGIAKYKTIGIHSIFQKEDLIEYR 528
           +I AYFDDP+YR   + SGI K++   +   ++ ++  EYR
Sbjct: 612 TIFAYFDDPRYRKDKRGSGIVKFRYRTLEEEYRTQE-EEYR 651


>UniRef100_Q9XPS9 DNA-directed RNA polymerase beta'' chain [Triticum aestivum]
          Length = 1479

 Score =  545 bits (1405), Expect = e-153
 Identities = 313/581 (53%), Positives = 400/581 (67%), Gaps = 28/581 (4%)

Query: 509  KYKTIGIHSIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSII 568
            +Y++    SI +KE LIE+RG +EF  KYQ +VDRFFFI QE+HIL  SSS+ + +NSII
Sbjct: 742  EYESPEEDSILKKEGLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKILDNSII 801

Query: 569  GVNTPITLNKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKK 628
            GV+T +T N +SR+GGLVRV++ K   ELKIFSGDIHFP E DKI      LIPPE  +K
Sbjct: 802  GVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKIL--GGCLIPPER-QK 858

Query: 629  KILRNQKKKTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNL 686
            K  +  KK+ NW Y+Q   I  +K+KYFV VRP + Y++ +  NL  LFPQDL +E +NL
Sbjct: 859  KDSKESKKRKNWVYVQRKKILKSKEKYFVSVRPTVAYEMDEGRNLATLFPQDLLQEENNL 918

Query: 687  ELKVLNFILYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLI 746
            +++++NFI + N K  + I  T+ Q VRTCLV+NW ++EK    E+A AS VEV  N LI
Sbjct: 919  QIRLVNFISHENSKLTQRIYHTNSQFVRTCLVVNWEQEEK----EKAGASLVEVRANDLI 974

Query: 747  RYFLRIDLVKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTI 806
            R FLRI+LVKS ISY RKR D +S+G I +N  DR NIN F+S  K    +SLSQ    I
Sbjct: 975  RDFLRIELVKSTISYTRKRYDRTSAGPIPHNRLDRANINSFYSKAKI---ESLSQHPEAI 1031

Query: 807  RMLLNRNKENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPIKISLGPLG- 865
              LLNRNKE  S +ILS+SNC ++G F N K+ N IKE       N +IPI+   GPLG 
Sbjct: 1032 GTLLNRNKEYHSLMILSASNCSRIGLFKNSKHPNAIKEW------NPRIPIREIFGPLGA 1085

Query: 866  VAPQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLMDENERIYKPDLYN 922
            +   I++F S Y+L+THNKI  +KK L ++  K+TFQV+   KY L+DEN+RI   D  +
Sbjct: 1086 IVASISHFSSSYYLLTHNKIL-LKKYLFVDNLKQTFQVLQELKYSLIDENKRISNFD--S 1142

Query: 923  NIILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFV 982
            NI+L+PF LN  F+H +  E+T  II LGQFICENVC+ ++      KSGQ+  V M+  
Sbjct: 1143 NIMLDPFLLNCHFVHHDSWEETLAIIHLGQFICENVCLFKSHIK---KSGQIFIVNMNSF 1199

Query: 983  GIRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSID 1042
             IR A PYLAT GAT++GHYGE+LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSID
Sbjct: 1200 VIRAAKPYLATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSID 1259

Query: 1043 SISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            S+S NLE+RI+ WNERI  ILG+PW   I     + Q  IS
Sbjct: 1260 SLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS 1300



 Score =  466 bits (1199), Expect = e-129
 Identities = 232/364 (63%), Positives = 285/364 (77%), Gaps = 18/364 (4%)

Query: 159 IYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNTSWICRLCYGRSP 212
           IYIGSRCI  RNQDIGIGL+NRFI       F+ QPI+IRTPFTCR+TSWIC+LCYGRSP
Sbjct: 252 IYIGSRCIAARNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSP 311

Query: 213 IHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENS 272
            H DLVELGEAVGIIAGQSIGEPGTQLTL TFHTGGVFTGGTA+ VRSPSNGKIKFNEN 
Sbjct: 312 THSDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRSPSNGKIKFNENL 371

Query: 273 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 332
            +PTRTRHG PAFLCYIDL+VTI+S DI+++V IP KS +LVQNDQYVKSEQ+IAEIRAG
Sbjct: 372 VHPTRTRHGQPAFLCYIDLHVTIQSQDILYSVNIPSKSLILVQNDQYVKSEQVIAEIRAG 431

Query: 333 TYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 392
           T TL+ KE+++KHI+S+S+GEMHWST++YH  E+ Y N+  LPKTSHLWILS +  +S  
Sbjct: 432 TSTLHFKERVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLWILSVSMCRSSI 491

Query: 393 VSLSLLKDQDQMSTHSLPTAK---RNTSNFLVSNNQVRLCPDHCHFMHPTISPDTSNLLA 449
            S SL KDQDQM+T+     +    +TS+ ++SN        H +F++P+I  D S+LLA
Sbjct: 492 ASFSLHKDQDQMNTYGKKDREILDYSTSDRIMSNG-------HWNFIYPSIFQDNSDLLA 544

Query: 450 KKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKNSILAYFDDPQYR--TQSSGI 507
           KKRRNRF+IP  +   +E+       IS+EIP+ G++ +N+I AYFDDP+YR   + SGI
Sbjct: 545 KKRRNRFVIPLQYHQEQEKELISCFGISIEIPLMGVLRRNTIFAYFDDPRYRKDKKGSGI 604

Query: 508 AKYK 511
            K++
Sbjct: 605 VKFR 608


>UniRef100_P12093 DNA-directed RNA polymerase beta'' chain [Oryza sativa]
          Length = 1513

 Score =  538 bits (1386), Expect = e-151
 Identities = 311/580 (53%), Positives = 395/580 (67%), Gaps = 35/580 (6%)

Query: 517  SIFQKEDLIEYRGIREFKPKYQIKVDRFFFIPQEVHILSESSSIMVRNNSIIGVNTPITL 576
            S+ +K  LIE+RG +EF  KYQ +VDRFFFI QE+HIL  SSS+ V +NSIIGV+T +T 
Sbjct: 768  SVLKKGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTK 827

Query: 577  NKKSRVGGLVRVEKNKKKIELKIFSGDIHFPGEIDKISQHSAILIPPEMVKKKILRNQKK 636
            N +SR+GGLVRV++ K   ELKIFSGDIHFP E DKI   S  LIP E  +KK  +  KK
Sbjct: 828  NTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGS--LIPLER-EKKDSKESKK 884

Query: 637  KTNWRYIQW--ITTTKKKYFVLVRPVILYDIADSINLVKLFPQDLFKEWDNLELKVLNFI 694
            + NW Y+QW  I  +K+KYFVLVRP + Y++ +  NL  LFPQDLF+E  NL+L+++NFI
Sbjct: 885  RENWVYVQWKKILKSKEKYFVLVRPAVAYEMNEGRNLATLFPQDLFEEEGNLQLRLVNFI 944

Query: 695  LYGNGKSIRGILDTSIQLVRTCLVLNWNEDEKSSSIEEALASFVEVSTNGLIRYFLRIDL 754
             + N K  + I  T+ Q VRTCLVLNW ++EK    EEA AS VE+  NGLIR FLRI L
Sbjct: 945  SHENSKLTQRIYHTNSQFVRTCLVLNWEQEEK----EEARASLVEIRANGLIRDFLRIGL 1000

Query: 755  VKSHISYIRKRNDPSSSGLISYNESDRININPFFSIYKENIQQSLSQKHGTIRMLLNRNK 814
            +KS ISY RKR D  S+GLI +N  DR N N F+S  K    QSLSQ    I  LLNRNK
Sbjct: 1001 IKSTISYTRKRYDSRSAGLILHNRLDRTNTNSFYSKAKI---QSLSQHQEAIGTLLNRNK 1057

Query: 815  ENRSFIILSSSNCFQMGPFNNVKYHNGIKEEINQFKRNHKIPI-------KISLGPLG-V 866
            E +S ++LS+SNC ++G F N K  NG+KE       N +IPI       +   G LG +
Sbjct: 1058 EYQSLMVLSASNCSRIGFFKNSKNPNGVKES------NPRIPIPKFWGLFRNFSGLLGTI 1111

Query: 867  APQIANFFSFYHLITHNKISSIKKNLQLNKFKETFQVI---KYYLMDENERIYKPDLYNN 923
            AP I+NF S Y+L+T+N+I  +KK+L L+  K+ F+V+   K+ L++EN+R    D  +N
Sbjct: 1112 APSISNFSSSYYLLTYNQIL-LKKHLLLDNLKQNFKVLQGLKHSLINENQRTSNFD--SN 1168

Query: 924  IILNPFHLNWDFIHPNYCEKTFPIISLGQFICENVCIVQTKNGPNLKSGQVITVQMDFVG 983
            I+L+PF LNW F+  +  E+T   I LGQFICENVC+ ++      KSGQ+  V +D   
Sbjct: 1169 IMLDPFQLNWHFLPHDSWEETSAKIHLGQFICENVCLFKSHIK---KSGQIFIVNIDSFV 1225

Query: 984  IRLANPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDS 1043
            IR A PYLAT GAT+HGHYGE+LY+GD LVTFIYEK+RS DITQGLPKVEQ+ E RSIDS
Sbjct: 1226 IRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDS 1285

Query: 1044 ISMNLEKRIDAWNERITGILGIPWSRKISMSRKLLQDNIS 1083
            +S NLE+RI+ WNERI  ILG PW   I     + Q  IS
Sbjct: 1286 LSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRIS 1325



 Score =  450 bits (1157), Expect = e-124
 Identities = 226/384 (58%), Positives = 283/384 (72%), Gaps = 31/384 (8%)

Query: 159 IYIGSRCIVVRNQDIGIGLINRFIN------FQTQPIFIRTPFTCRNTSWICRLCYGRSP 212
           IYIGSRCI  RNQDIGIGL+NRFI       F+ QPI+IRTPFTCR+TSWIC+LCYGRS 
Sbjct: 252 IYIGSRCIATRNQDIGIGLVNRFITTFRAQPFRAQPIYIRTPFTCRSTSWICQLCYGRSS 311

Query: 213 IHGDLVELGEAVGIIAGQSIGEPGTQLTLITFHTGGVFTGGTAEYVRSPSNGKIKFNENS 272
            HGDLVELGEAVG+IAGQSIGEPGTQLTL TFHTGGVFTGGTA+ VRSPSNGKI+FN + 
Sbjct: 312 THGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRSPSNGKIQFNGDL 371

Query: 273 AYPTRTRHGHPAFLCYIDLYVTIESNDIMHNVIIPPKSFLLVQNDQYVKSEQIIAEIRAG 332
            +PTRTRHG PAFLCYIDL++TI+S DI+H+V IP KS +LVQNDQYV+SEQ+IAEIRAG
Sbjct: 372 VHPTRTRHGQPAFLCYIDLHITIQSQDILHSVTIPSKSLILVQNDQYVESEQVIAEIRAG 431

Query: 333 TYTLNLKEKIRKHIFSDSEGEMHWSTNIYHVSEFAYSNVHILPKTSHLWILSGNSHKSDT 392
           T  L+ KEK++KHI+S+S+GEMHWST++YH  E+ Y N+  LPKTSHLWILS +  +S  
Sbjct: 432 TSALHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLWILSVSMCRSSI 491

Query: 393 VSLSLLKDQDQMSTHSLPTAKRNTSNFLVSNNQVR-----------------LCPD---- 431
            S SL KDQDQM+T+S     R      +++++VR                   PD    
Sbjct: 492 ASFSLHKDQDQMNTYSFSVDGRYIFGLSMADDEVRHRLLDTFGKKDREILDYSTPDRIMS 551

Query: 432 --HCHFMHPTISPDTSNLLAKKRRNRFIIPFLFRSIRERNNELMPDISVEIPIDGIIHKN 489
             H +F++P+I  +  +LLAKKRRNRF IP  +   +E+       IS+EIP  G++ +N
Sbjct: 552 NGHWNFVYPSILQNNFDLLAKKRRNRFAIPLQYHQEQEKEPISCFGISIEIPFMGVLRRN 611

Query: 490 SILAYFDDPQYR--TQSSGIAKYK 511
           +I+AYFDDP+Y+   + SGI K++
Sbjct: 612 TIVAYFDDPRYKKDKKGSGIVKFR 635


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.327    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,861,772,720
Number of Sequences: 2790947
Number of extensions: 82671517
Number of successful extensions: 242893
Number of sequences better than 10.0: 1180
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 240615
Number of HSP's gapped (non-prelim): 2056
length of query: 1085
length of database: 848,049,833
effective HSP length: 138
effective length of query: 947
effective length of database: 462,899,147
effective search space: 438365492209
effective search space used: 438365492209
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)