BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0260.11
(337 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XH21 Putative gag-pol polyprotein [Oryza sativa] 49 1e-04
UniRef100_Q94I58 Putative retroelement [Oryza sativa] 49 1e-04
UniRef100_Q75G45 Putative polyprotein [Oryza sativa] 49 3e-04
UniRef100_Q8LMK9 Putative gag/pol polyprotein [Oryza sativa] 47 7e-04
UniRef100_Q7XN23 OSJNBb0016D16.10 protein [Oryza sativa] 47 7e-04
UniRef100_Q8RZ67 Putative rice retrotransposon retrofit gag/pol ... 47 0.001
UniRef100_O24438 Retrofit [Oryza longistaminata] 46 0.001
UniRef100_Q94LQ7 Putative gag-pol polyprotein [Oryza sativa] 46 0.002
UniRef100_Q7XE22 Putative gag-pol polyprotein [Oryza sativa] 46 0.002
UniRef100_Q75LJ1 Putative copia-like retrotransposon protein [Or... 45 0.002
UniRef100_Q9XE87 Polyprotein [Sorghum bicolor] 45 0.003
UniRef100_Q8HCR1 Orf490 protein [Oryza sativa] 44 0.005
UniRef100_Q688S3 Putative polyprotein [Oryza sativa] 42 0.018
UniRef100_Q84ME7 Putative gag/pol polyprotein, 5'-partial [Oryza... 42 0.024
UniRef100_Q6ATL7 Putative polyprotein [Oryza sativa] 42 0.024
UniRef100_Q8S631 Putative retrotransposon protein [Oryza sativa] 40 0.090
UniRef100_Q8RU52 Putative copia-like retrotransposon Hopscotch p... 40 0.090
UniRef100_Q8W0X9 Putative copia-like retrotransposon Hopscotch p... 40 0.12
UniRef100_P92519 Hypothetical mitochondrial protein AtMg00810 [A... 39 0.20
UniRef100_Q7G7H3 Putative gag-pol protein [Oryza sativa] 38 0.45
>UniRef100_Q7XH21 Putative gag-pol polyprotein [Oryza sativa]
Length = 1058
Score = 49.3 bits (116), Expect = 1e-04
Identities = 36/106 (33%), Positives = 53/106 (49%), Gaps = 8/106 (7%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKSAS-TLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L F +KDLGELHYFL K AS ++++ ++ ++ K +
Sbjct: 757 LEKEFALKDLGELHYFLGIEVKKASGNILLNQERYASEIVKRVSMENCKSVGTPLSTVEK 816
Query: 197 *NSF-GFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQFKQ 235
+++ G D+ Y+S+VGAL PDI+F VNKVCQF Q
Sbjct: 817 LSAYEGEKLGEKDATQYRSVVGALQYLTLTRPDISFSVNKVCQFLQ 862
>UniRef100_Q94I58 Putative retroelement [Oryza sativa]
Length = 1096
Score = 49.3 bits (116), Expect = 1e-04
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKSAST-LMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLGELHYFL K + +++ VL + K + +S +
Sbjct: 803 LNQEFALKDLGELHYFLGIEVKKVNDGIVLTQEKYAKDVLKRVNMSDCKAVNTPLSISEK 862
Query: 197 *NSF-GFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
+++ G DS Y+S+VGALH PD++F VNKVCQ+
Sbjct: 863 LSAYEGTPLGPVDSTWYRSLVGALHYLTLTRPDLSFSVNKVCQY 906
>UniRef100_Q75G45 Putative polyprotein [Oryza sativa]
Length = 1431
Score = 48.5 bits (114), Expect = 3e-04
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKSAST-LMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLG LHYFL K + +++ M VL + K + +S +
Sbjct: 1136 LNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEK 1195
Query: 197 *NSF-GFSFNSHDSWLYKSIVGAL------HPDIAFCVNKVCQF 233
++ G F DS Y+S+VGAL PD++F VNKVCQ+
Sbjct: 1196 LSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQY 1239
>UniRef100_Q8LMK9 Putative gag/pol polyprotein [Oryza sativa]
Length = 760
Score = 47.0 bits (110), Expect = 7e-04
Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 36/111 (32%)
Query: 142 FPIKDLGELHYFL----MKHC--------KSASTLM-------IHDFVCQMSVLFNLT*H 182
F +KD+G+LHYFL K C K AS L+ MS L+ H
Sbjct: 567 FALKDIGDLHYFLGIEVNKVCDGILLTQEKYASDLLKRAGMSGCKPVATPMSTTEKLSAH 626
Query: 183 FVKKRSILALLSIQ*NSFGFSFNSHDSWLYKSIVGALHPDIAFCVNKVCQF 233
G D+ Y+SIVGAL PDI+F VNKVCQF
Sbjct: 627 S-----------------GSVLGEQDATKYRSIVGALRPDISFVVNKVCQF 660
>UniRef100_Q7XN23 OSJNBb0016D16.10 protein [Oryza sativa]
Length = 950
Score = 47.0 bits (110), Expect = 7e-04
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFL-MKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLG+LHYFL ++ K ++ +++ +L + K S +S +
Sbjct: 219 LNKEFALKDLGDLHYFLGIEVTKVSNGIILTQEKYANDLLKRVNMSNCKPVSTPLSVSEK 278
Query: 197 *NSF-GFSFNSHDSWLYKSIVGAL------HPDIAFCVNKVCQF 233
+ G +D+ Y+SIVGAL PDIA+ VNKVCQF
Sbjct: 279 LTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQF 322
>UniRef100_Q8RZ67 Putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa]
Length = 1448
Score = 46.6 bits (109), Expect = 0.001
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFL-MKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLG+LHYFL ++ K ++ +++ +L + K S +S +
Sbjct: 1154 LNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEK 1213
Query: 197 *NSF-GFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
+ G +D+ Y+SIVGAL PDIA+ VNKVCQF
Sbjct: 1214 LTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQF 1257
>UniRef100_O24438 Retrofit [Oryza longistaminata]
Length = 1445
Score = 46.2 bits (108), Expect = 0.001
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFL-MKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLG+LHYFL ++ K ++ +++ +L + K S +S +
Sbjct: 1151 LNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEK 1210
Query: 197 *NSF-GFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
+ G +D+ Y+SIVGAL PDIA+ VNKVCQF
Sbjct: 1211 LTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQF 1254
>UniRef100_Q94LQ7 Putative gag-pol polyprotein [Oryza sativa]
Length = 1031
Score = 45.8 bits (107), Expect = 0.002
Identities = 35/104 (33%), Positives = 52/104 (49%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKSAST-LMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLG LHYFL K + +++ M VL + K + +S +
Sbjct: 736 LNQEFALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEK 795
Query: 197 *NSF-GFSFNSHDSWLYKSIVGAL------HPDIAFCVNKVCQF 233
++ G DS Y+S+VGAL PD++F VNKVCQ+
Sbjct: 796 LSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQY 839
>UniRef100_Q7XE22 Putative gag-pol polyprotein [Oryza sativa]
Length = 932
Score = 45.8 bits (107), Expect = 0.002
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILAL----- 192
L F +KDLG+LHYFL K S ++ S + + K + L
Sbjct: 640 LEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEK 699
Query: 193 LSIQ*NSFGFSFNSHDSWLYKSIVGAL------HPDIAFCVNKVCQF 233
LSI+ F +D+ Y+SIVGAL D++F VNKVCQF
Sbjct: 700 LSIEDGDF---LGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQF 743
>UniRef100_Q75LJ1 Putative copia-like retrotransposon protein [Oryza sativa]
Length = 1399
Score = 45.4 bits (106), Expect = 0.002
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 142 FPIKDLGELHYFL-MKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ*N-S 199
F +KDLG+LHYFL ++ K LM+ +L + + K S S + + +
Sbjct: 1103 FALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVN 1162
Query: 200 FGFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
G DS Y+S+VGAL PDI+F +NKVCQF
Sbjct: 1163 EGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQF 1202
>UniRef100_Q9XE87 Polyprotein [Sorghum bicolor]
Length = 1012
Score = 45.1 bits (105), Expect = 0.003
Identities = 41/108 (37%), Positives = 51/108 (46%), Gaps = 24/108 (22%)
Query: 142 FPIKDLGELHYFLMKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSIL--------ALL 193
F +KDLG+LHYFL K +T M+ + Q V KRS + L
Sbjct: 722 FALKDLGDLHYFLGIEVKRGNTSML---LTQERYATE-----VLKRSGMDKCHPVDTPLC 773
Query: 194 SIQ*NSF--GFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
S + S G S D+ Y S+VGAL PDI+F VNKVCQF
Sbjct: 774 SSEKLSIEDGNKLGSEDATKYCSVVGALQYLTLTRPDISFAVNKVCQF 821
Score = 36.2 bits (82), Expect = 1.3
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 201 GFSFNSHDSWLYKSIVGALHPDIAFCVNK--------VCQFKQLIFLTAKKVVVVS*SNT 252
G F+ +S L + A D A CV+ V LI TAKK VS S+T
Sbjct: 847 GIKFSKSESMLVSAFADA---DWAGCVDDRRSTGGFAVFLGNNLISWTAKKQPTVSRSST 903
Query: 253 EAEYRSIAFDTI*PIWLQ 270
EAEY+++A T IW+Q
Sbjct: 904 EAEYKALANATAEMIWVQ 921
>UniRef100_Q8HCR1 Orf490 protein [Oryza sativa]
Length = 490
Score = 44.3 bits (103), Expect = 0.005
Identities = 37/104 (35%), Positives = 51/104 (48%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFL-MKHCKSASTLMIHDFVCQMSVLFNLT*HFVKK-RSILALLSI 195
L F +KDLG LHYFL ++ K +++ +L + H K+ + L+
Sbjct: 199 LKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKRVGMHGCKEINTPLSTTDK 258
Query: 196 Q*NSFGFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
G + DS Y+SIVGAL PDIAF VNKVCQ+
Sbjct: 259 LLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVCQY 302
>UniRef100_Q688S3 Putative polyprotein [Oryza sativa]
Length = 1210
Score = 42.4 bits (98), Expect = 0.018
Identities = 35/108 (32%), Positives = 50/108 (45%), Gaps = 19/108 (17%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILAL----- 192
L F +KD G+LHYFL S ++ V Q +L +K+ +L
Sbjct: 1031 LKQEFALKDFGDLHYFLGIEVNKLSDGIL---VTQNKYALDL----LKRAGMLDCKPVDT 1083
Query: 193 -LSIQ*NSFGFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
LS ++ + D+ Y+SIVGAL PD +F +NKVCQF
Sbjct: 1084 PLSTTEKLSAYTGSIQDATRYRSIVGALQYLTLTRPDTSFAINKVCQF 1131
>UniRef100_Q84ME7 Putative gag/pol polyprotein, 5'-partial [Oryza sativa]
Length = 352
Score = 42.0 bits (97), Expect = 0.024
Identities = 39/114 (34%), Positives = 49/114 (42%), Gaps = 28/114 (24%)
Query: 138 LHSVFPIKDLGELHYFL------------MKHCKSASTLMIHDFVCQMSVLFNLT*HFVK 185
L F +KDLG+LHYFL M K AS L+ MS ++
Sbjct: 52 LQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKR---VNMSDCKSVATPLSA 108
Query: 186 KRSILALLSIQ*NSFGFSFNSHDSWLYKSIVGALHP------DIAFCVNKVCQF 233
++A G +D+ Y+SIVGAL DIAF VNKVCQF
Sbjct: 109 SEKLIA-------GKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQF 155
>UniRef100_Q6ATL7 Putative polyprotein [Oryza sativa]
Length = 1437
Score = 42.0 bits (97), Expect = 0.024
Identities = 39/114 (34%), Positives = 49/114 (42%), Gaps = 28/114 (24%)
Query: 138 LHSVFPIKDLGELHYFL------------MKHCKSASTLMIHDFVCQMSVLFNLT*HFVK 185
L F +KDLG+LHYFL M K AS L+ MS ++
Sbjct: 1137 LQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKR---VNMSDCKSVATPLSA 1193
Query: 186 KRSILALLSIQ*NSFGFSFNSHDSWLYKSIVGALHP------DIAFCVNKVCQF 233
++A G +D+ Y+SIVGAL DIAF VNKVCQF
Sbjct: 1194 SEKLIA-------GKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQF 1240
>UniRef100_Q8S631 Putative retrotransposon protein [Oryza sativa]
Length = 1139
Score = 40.0 bits (92), Expect = 0.090
Identities = 35/104 (33%), Positives = 50/104 (47%), Gaps = 15/104 (14%)
Query: 142 FPIKDLGELHYFLM--KHCKSASTLMIHDFVCQMSVLFNLT*HFVKKR----SILALLSI 195
F +KDLG+L+Y+ + + K + L++ +L + K S LS+
Sbjct: 741 FALKDLGDLNYYFLGIEVKKISDGLVLSQDKYTHDILKRIGMSTCKPAPTPLSTSEKLSV 800
Query: 196 Q*NSFGFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
Q S D+ Y+SIVGAL PDIAF +NKVCQF
Sbjct: 801 QEGSL---LGPGDATNYRSIVGALQYLTLTRPDIAFSINKVCQF 841
>UniRef100_Q8RU52 Putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa]
Length = 1150
Score = 40.0 bits (92), Expect = 0.090
Identities = 35/104 (33%), Positives = 50/104 (47%), Gaps = 15/104 (14%)
Query: 142 FPIKDLGELHYFLM--KHCKSASTLMIHDFVCQMSVLFNLT*HFVKKR----SILALLSI 195
F +KDLG+L+Y+ + + K + L++ +L + K S LS+
Sbjct: 773 FALKDLGDLNYYFLGIEVKKISDGLVLSQDKYTHDILKRIGMSTCKPAPTPLSTSEKLSV 832
Query: 196 Q*NSFGFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
Q S D+ Y+SIVGAL PDIAF +NKVCQF
Sbjct: 833 QEGSL---LGPGDATNYRSIVGALQYLTLTRPDIAFSINKVCQF 873
>UniRef100_Q8W0X9 Putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 39.7 bits (91), Expect = 0.12
Identities = 36/104 (34%), Positives = 50/104 (47%), Gaps = 8/104 (7%)
Query: 138 LHSVFPIKDLGELHYFL-MKHCKSASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLG+L+YFL ++ K +++ +L + K S S +
Sbjct: 1019 LNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEK 1078
Query: 197 *NSF-GFSFNSHDSWLYKSIVGALH------PDIAFCVNKVCQF 233
+ G D Y+SIVGAL PDIAF VNKVCQF
Sbjct: 1079 LSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQF 1122
>UniRef100_P92519 Hypothetical mitochondrial protein AtMg00810 [Arabidopsis thaliana]
Length = 240
Score = 38.9 bits (89), Expect = 0.20
Identities = 34/102 (33%), Positives = 49/102 (47%), Gaps = 9/102 (8%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKS-ASTLMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L S F +KDLG +HYFL K+ S L + +L N + + + L ++
Sbjct: 27 LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA--GMLDCKPMSTPLPLK 84
Query: 197 *NSFGFSFNSHDSWLYKSIVGAL------HPDIAFCVNKVCQ 232
NS + D ++SIVGAL PDI++ VN VCQ
Sbjct: 85 LNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQ 126
>UniRef100_Q7G7H3 Putative gag-pol protein [Oryza sativa]
Length = 1219
Score = 37.7 bits (86), Expect = 0.45
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 138 LHSVFPIKDLGELHYFLMKHCKSAST-LMIHDFVCQMSVLFNLT*HFVKKRSILALLSIQ 196
L+ F +KDLG+LH+FL K + L++ VL + K + +S +
Sbjct: 1075 LNQEFALKDLGDLHFFLGIEVKKVNDGLVLTQEKYASDVLRRVGMSDCKPVNTPLSISEK 1134
Query: 197 *NSFGFS-FNSHDSWLYKSIVGAL------HPDIAFCVNK 229
+S G + +DS Y+SIVGAL PDI+F VNK
Sbjct: 1135 LSSQGGALLGPNDSTQYRSIVGALQYLTLTRPDISFSVNK 1174
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.364 0.164 0.596
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,990,924
Number of Sequences: 2790947
Number of extensions: 14960842
Number of successful extensions: 77936
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 77852
Number of HSP's gapped (non-prelim): 97
length of query: 337
length of database: 848,049,833
effective HSP length: 128
effective length of query: 209
effective length of database: 490,808,617
effective search space: 102579000953
effective search space used: 102579000953
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0260.11