BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0252b.2
(515 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8W214 Single-stranded DNA binding protein precursor [... 54 8e-06
UniRef100_Q24474 RNA-binding protein [Drosophila melanogaster] 53 2e-05
UniRef100_Q7KU26 CG3151-PD, isoform D [Drosophila melanogaster] 53 2e-05
UniRef100_Q8S7G2 Putative ribonucleoprotein [Oryza sativa] 52 3e-05
UniRef100_Q7KU23 CG3151-PB, isoform B [Drosophila melanogaster] 52 3e-05
UniRef100_Q9VQJ0 CG3151-PA, isoform A [Drosophila melanogaster] 52 3e-05
UniRef100_Q26293 RRM9 [Drosophila melanogaster] 52 3e-05
UniRef100_Q6MQY2 RNA-binding protein [Bdellovibrio bacteriovorus] 52 4e-05
UniRef100_Q9FNR1 Similarity to RNA binding protein [Arabidopsis ... 52 5e-05
UniRef100_UPI00003AC9CF UPI00003AC9CF UniRef100 entry 51 9e-05
UniRef100_Q91YP5 ELAV (Embryonic lethal, abnormal vision, Drosop... 51 9e-05
UniRef100_Q8BW03 Mus musculus adult male small intestine cDNA, R... 51 9e-05
UniRef100_Q8BM84 Mus musculus 12 days embryo embryonic body betw... 51 9e-05
UniRef100_P70372 ELAV-like protein 1 [Mus musculus] 51 9e-05
UniRef100_UPI00003607DD UPI00003607DD UniRef100 entry 50 1e-04
UniRef100_Q8BVF8 Mus musculus 10 days neonate cerebellum cDNA, R... 50 1e-04
UniRef100_Q8BTQ1 Mus musculus 2 days neonate thymus thymic cells... 50 1e-04
UniRef100_Q966S6 Hu/elav class neuron-specific RNA binding prote... 50 1e-04
UniRef100_Q15717 ELAV-like protein 1 [Homo sapiens] 50 1e-04
UniRef100_Q9PW24 RNA-binding protein HuA [Gallus gallus] 50 2e-04
>UniRef100_Q8W214 Single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 54.3 bits (129), Expect = 8e-06
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V +A SV Q+ LF++ G++V+ V + GR FGFV ++S K AI+SL
Sbjct: 206 VYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESL 265
Query: 106 DGVRLGGASLSV--GLAKPPQK 125
DGV LGG ++ V A+PP++
Sbjct: 266 DGVDLGGRAIRVSPAEARPPRR 287
Score = 42.4 bits (98), Expect = 0.033
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 17 VDVGDEAADEEDGSTPNQKCSGVSRVC---VSLFVDGIAESVSYHQIRGLFAQFGRLVNV 73
V+ GD+ DEE+G ++ S R + +FV + SV + LF + G + V
Sbjct: 71 VEAGDD--DEEEGGLSDEGASYEERNANPDLKIFVGNLPFSVDSAALAELFERAGDVEMV 128
Query: 74 FVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQK 125
V K GR FGFV +S + A + +G + G +L V P K
Sbjct: 129 EVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAPPK 180
>UniRef100_Q24474 RNA-binding protein [Drosophila melanogaster]
Length = 439
Score = 52.8 bits (125), Expect = 2e-05
Identities = 39/163 (23%), Positives = 77/163 (46%), Gaps = 14/163 (8%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 150
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKV 144
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 151 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL------- 203
Query: 145 DGSSGLTGKRKESVSGPF--ISSWR---DVVVGNTKGSRLVSF 182
+T ES+ P+ I + R D + G +KG + F
Sbjct: 204 --PKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRF 244
Score = 41.2 bits (95), Expect = 0.073
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 358 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 417
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 418 NGYTLGNRVLQV 429
>UniRef100_Q7KU26 CG3151-PD, isoform D [Drosophila melanogaster]
Length = 642
Score = 52.8 bits (125), Expect = 2e-05
Identities = 39/163 (23%), Positives = 77/163 (46%), Gaps = 14/163 (8%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 294 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 353
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKV 144
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 354 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL------- 406
Query: 145 DGSSGLTGKRKESVSGPF--ISSWR---DVVVGNTKGSRLVSF 182
+T ES+ P+ I + R D + G +KG + F
Sbjct: 407 --PKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRF 447
Score = 41.2 bits (95), Expect = 0.073
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 561 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 620
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 621 NGYTLGNRVLQV 632
>UniRef100_Q8S7G2 Putative ribonucleoprotein [Oryza sativa]
Length = 265
Score = 52.4 bits (124), Expect = 3e-05
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 12 AVGDGVDVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLV 71
AV + V+ ++ +EE+GS ++ S RV FV + SV Q+ GLF Q G +
Sbjct: 59 AVSEEVETEEDEEEEEEGSG-GEEFSDDLRV----FVGNLPFSVDSAQLAGLFEQAGSVE 113
Query: 72 NVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSD 131
V V K GR FGFV +S + A++ +G L G SL V PP + S
Sbjct: 114 MVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSQR 173
Query: 132 A 132
A
Sbjct: 174 A 174
Score = 37.4 bits (85), Expect = 1.0
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V ++ V + LF+ G ++ V ++ GR FGFV + S + A+ +L
Sbjct: 182 VYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNL 241
Query: 106 DGVRLGGASLSVGLA--KPPQK 125
DG + G + V +A KPP++
Sbjct: 242 DGADMDGRQIRVTVAESKPPRR 263
>UniRef100_Q7KU23 CG3151-PB, isoform B [Drosophila melanogaster]
Length = 444
Score = 52.4 bits (124), Expect = 3e-05
Identities = 28/113 (24%), Positives = 59/113 (51%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 150
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 151 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 203
Score = 41.2 bits (95), Expect = 0.073
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 423 NGYTLGNRVLQV 434
>UniRef100_Q9VQJ0 CG3151-PA, isoform A [Drosophila melanogaster]
Length = 647
Score = 52.4 bits (124), Expect = 3e-05
Identities = 28/113 (24%), Positives = 59/113 (51%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 294 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 353
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 354 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 406
Score = 41.2 bits (95), Expect = 0.073
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 566 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 625
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 626 NGYTLGNRVLQV 637
>UniRef100_Q26293 RRM9 [Drosophila melanogaster]
Length = 444
Score = 52.4 bits (124), Expect = 3e-05
Identities = 28/113 (24%), Positives = 59/113 (51%)
Query: 25 DEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRR 84
+ + +T N + +L V+ + +++S +IR LF FG + + + R K G+
Sbjct: 91 NNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS 150
Query: 85 FRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
+GFV + + A AI +L+G+RL ++ V +A+P + + ++ V+ +
Sbjct: 151 LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 203
Score = 41.2 bits (95), Expect = 0.073
Identities = 25/72 (34%), Positives = 39/72 (53%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+FV +A + + LF FG + +V V R + + FGFV T+++ A +AI+SL
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 106 DGVRLGGASLSV 117
+G LG L V
Sbjct: 423 NGYTLGNRVLQV 434
>UniRef100_Q6MQY2 RNA-binding protein [Bdellovibrio bacteriovorus]
Length = 104
Score = 52.0 bits (123), Expect = 4e-05
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
++V ++ +V Q+ GLFA FG + +V + + GR F FV +S A AI L
Sbjct: 5 IYVGNLSYNVDQDQLGGLFADFGTVDSVNIITDRDTGRSKGFAFVEMSSDSEATAAIDKL 64
Query: 106 DGVRLGGASLSVGLAKPPQ 124
+G+ LGG ++++ AKP +
Sbjct: 65 NGMDLGGRAMNISEAKPQE 83
>UniRef100_Q9FNR1 Similarity to RNA binding protein [Arabidopsis thaliana]
Length = 309
Score = 51.6 bits (122), Expect = 5e-05
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
LF+ G+A S+ +R F ++G +V+ V ++ GR FGFV FTS + A+ AI++L
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 106 DGVRLGGASLSVGLA 120
DG L G + V A
Sbjct: 102 DGRDLHGRVVKVNYA 116
>UniRef100_UPI00003AC9CF UPI00003AC9CF UniRef100 entry
Length = 326
Score = 50.8 bits (120), Expect = 9e-05
Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVDGSSGLTGKRKESVSGPF-- 162
L+G+RL ++ V A+P +V+ ++ ++ + +T K E + F
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGL---------PRSMTQKDVEDMFSRFGR 131
Query: 163 ISSWRDVVVGNTKGSRLVSFAEDVKMMAYVPWLTNLEG 200
I + R +V T SR V+F K +TN G
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 43.1 bits (100), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.9 bits (89), Expect = 0.36
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ S++ + +F++FGR++N V + G F+RF A AI +
Sbjct: 107 NLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITN 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQKVVSRSDAKVANVC 138
+G + G+S ++V A P + +++ A ++ +C
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ--NKNVALLSQLC 200
>UniRef100_Q91YP5 ELAV (Embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (Mus musculus 3 days neonate thymus cDNA,
RIKEN full-length enriched library, clone:A630073F18
product:ELAV-LIKE PROTEIN 1 (HU- ANTIGEN R) (HUR)
(ELAV-LIKE GENERIC PROTEIN) (MELG), full insert
sequence) [Mus musculus]
Length = 326
Score = 50.8 bits (120), Expect = 9e-05
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.61
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>UniRef100_Q8BW03 Mus musculus adult male small intestine cDNA, RIKEN full-length
enriched library, clone:2010107C19 product:ELAV-LIKE
PROTEIN 1 (HU- ANTIGEN R) (HUR) (ELAV-LIKE GENERIC
PROTEIN) (MELG), full insert sequence [Mus musculus]
Length = 326
Score = 50.8 bits (120), Expect = 9e-05
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.61
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>UniRef100_Q8BM84 Mus musculus 12 days embryo embryonic body between diaphragm region
and neck cDNA, RIKEN full-length enriched library,
clone:9430002B02 product:ELAV-LIKE PROTEIN 1 (HU-ANTIGEN
R) (HUR) (ELAV-LIKE GENERIC PROTEIN) (MELG), full insert
sequence [Mus musculus]
Length = 326
Score = 50.8 bits (120), Expect = 9e-05
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWRMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.61
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>UniRef100_P70372 ELAV-like protein 1 [Mus musculus]
Length = 326
Score = 50.8 bits (120), Expect = 9e-05
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 42.0 bits (97), Expect = 0.043
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ +A+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 36.6 bits (83), Expect = 1.8
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
G + G+S ++V A P +
Sbjct: 167 FIGHKPPGSSEPITVKFAANPNQ 189
>UniRef100_UPI00003607DD UPI00003607DD UniRef100 entry
Length = 344
Score = 50.4 bits (119), Expect = 1e-04
Identities = 26/93 (27%), Positives = 52/93 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + +S+S ++R LF+ G + + + R K G +GFV F + A AI +
Sbjct: 6 NLIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSDAVRAINT 65
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
L+G+RL +L V A+P +++ ++ ++ +
Sbjct: 66 LNGLRLQSKTLKVSYARPSSEMIKDANLYISGL 98
Score = 46.6 bits (109), Expect = 0.002
Identities = 31/101 (30%), Positives = 49/101 (47%), Gaps = 9/101 (8%)
Query: 17 VDVGDEAADEEDGSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQ 76
+ V ++ G++PN C +F+ + + + LF FG +VNV V
Sbjct: 244 MSVDHVSSSSASGNSPNGWC---------IFIYNLGQEADEAILWQLFGPFGAVVNVKVI 294
Query: 77 RKKKLGRRFRFGFVRFTSWKVAAVAIKSLDGVRLGGASLSV 117
R + FGFV ++++ AA+AI SL+G RLG L V
Sbjct: 295 RDFNTSKCKGFGFVTMSNYEEAAMAIHSLNGYRLGDKVLQV 335
Score = 35.8 bits (81), Expect = 3.1
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ + S + +F+ +GR++N V + G F+RF A AIK
Sbjct: 92 NLYISGLPRTASQQDLEDMFSHYGRIINSRVLVDQASGVSRGVAFIRFDKRSEAEDAIKH 151
Query: 105 LDG 107
L+G
Sbjct: 152 LNG 154
>UniRef100_Q8BVF8 Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:6530401I16 product:ELAV-LIKE
PROTEIN 1 (HU- ANTIGEN R) (HUR) (ELAV-LIKE GENERIC
PROTEIN) (MELG), full insert sequence [Mus musculus]
Length = 326
Score = 50.4 bits (119), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLHQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 39.3 bits (90), Expect = 0.28
Identities = 24/72 (33%), Positives = 36/72 (49%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
RLG L V
Sbjct: 306 KRYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.61
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>UniRef100_Q8BTQ1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-
length enriched library, clone:E430039C01
product:ELAV-LIKE PROTEIN 1 (HU-ANTIGEN R) (HUR)
(ELAV-LIKE GENERIC PROTEIN) (MELG), full insert sequence
[Mus musculus]
Length = 305
Score = 50.4 bits (119), Expect = 1e-04
Identities = 25/100 (25%), Positives = 55/100 (55%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +L
Sbjct: 1 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 60
Query: 106 DGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 61 NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 100
Score = 43.1 bits (100), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 225 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 284
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 285 NGYRLGDKILQV 296
Score = 38.1 bits (87), Expect = 0.61
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 86 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 145
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 146 FNGHKPPGSSEPITVKFAANPNQ 168
>UniRef100_Q966S6 Hu/elav class neuron-specific RNA binding protein [Branchiostoma
belcheri]
Length = 326
Score = 50.4 bits (119), Expect = 1e-04
Identities = 36/159 (22%), Positives = 75/159 (46%), Gaps = 4/159 (2%)
Query: 29 GSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFG 88
GS + S +L V+ + ++++ +I+ LF+ G + + + R K G+ +G
Sbjct: 8 GSPDGRTGSSTKDSKTNLIVNYLPQTMTQDEIKSLFSSIGEVESCKLIRDKVTGQSLGYG 67
Query: 89 FVRFTSWKVAAVAIKSLDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVDGSS 148
FV + + A AI +L+G+RL ++ V A+P + + ++ V+ + + + D
Sbjct: 68 FVNYVKPQDAEKAINTLNGLRLQAKTIKVSYARPSSQAIKDANLYVSGLPKTMTQQD-LE 126
Query: 149 GLTGKRKESVSGPFISSWRDVVVGNTKGSRLVSFAEDVK 187
GL ++ + D V G ++G V F + V+
Sbjct: 127 GLFEAHGRIITSRILF---DPVTGQSRGVGFVRFDQRVE 162
Score = 40.4 bits (93), Expect = 0.12
Identities = 31/89 (34%), Positives = 41/89 (45%), Gaps = 6/89 (6%)
Query: 29 GSTPNQKCSGVSRVCVSLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFG 88
G+ PN G + C+ FV +A + LF FG + NV V R + + FG
Sbjct: 234 GNIPN----GGTGFCI--FVYNLAPDTEDSVLWQLFGPFGAVTNVKVIRDFQTNKCKGFG 287
Query: 89 FVRFTSWKVAAVAIKSLDGVRLGGASLSV 117
FV + A VAI L+G LGG L V
Sbjct: 288 FVTMAHYDEAVVAIAQLNGYCLGGRVLQV 316
Score = 35.4 bits (80), Expect = 4.0
Identities = 24/83 (28%), Positives = 41/83 (48%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L+V G+ ++++ + GLF GR++ + G+ GFVRF A AI
Sbjct: 110 NLYVSGLPKTMTQQDLEGLFEAHGRIITSRILFDPVTGQSRGVGFVRFDQRVEAERAITE 169
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
L+G GA+ ++V A P +
Sbjct: 170 LNGHIPKGATDPITVKFANNPSQ 192
>UniRef100_Q15717 ELAV-like protein 1 [Homo sapiens]
Length = 326
Score = 50.4 bits (119), Expect = 1e-04
Identities = 25/101 (24%), Positives = 56/101 (54%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANVCSVIKKVD 145
L+G+RL ++ V A+P +V+ ++ ++ + + + D
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKD 121
Score = 43.1 bits (100), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 38.1 bits (87), Expect = 0.61
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ +++ + +F++FGR++N V + G F+RF A AI S
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQK 125
+G + G+S ++V A P +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ 189
>UniRef100_Q9PW24 RNA-binding protein HuA [Gallus gallus]
Length = 326
Score = 50.1 bits (118), Expect = 2e-04
Identities = 24/93 (25%), Positives = 53/93 (56%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L V+ + ++++ ++R LF+ G + + + R K G +GFV + + K A AI +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 105 LDGVRLGGASLSVGLAKPPQKVVSRSDAKVANV 137
L+G+RL ++ V A+P +V+ ++ ++ +
Sbjct: 81 LNGLRLQSKTIKVSYARPSSEVIKDANLYISGL 113
Score = 43.1 bits (100), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 46 LFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKSL 105
+F+ + + + +F FG + NV V R + FGFV T+++ AA+AI SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 106 DGVRLGGASLSV 117
+G RLG L V
Sbjct: 306 NGYRLGDKILQV 317
Score = 37.7 bits (86), Expect = 0.80
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 45 SLFVDGIAESVSYHQIRGLFAQFGRLVNVFVQRKKKLGRRFRFGFVRFTSWKVAAVAIKS 104
+L++ G+ S++ + +F++FGR++N V + G F+RF A AI +
Sbjct: 107 NLYISGLPRSMTQKDVVDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITN 166
Query: 105 LDGVRLGGAS--LSVGLAKPPQKVVSRSDAKVANVC 138
+G + G+S ++V A P + +++ A ++ +C
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQ--NKNVALLSQLC 200
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 888,653,650
Number of Sequences: 2790947
Number of extensions: 38918793
Number of successful extensions: 93338
Number of sequences better than 10.0: 1902
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 734
Number of HSP's that attempted gapping in prelim test: 90963
Number of HSP's gapped (non-prelim): 2924
length of query: 515
length of database: 848,049,833
effective HSP length: 132
effective length of query: 383
effective length of database: 479,644,829
effective search space: 183703969507
effective search space used: 183703969507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0252b.2