BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0248.1
(119 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8H807 Putative non-LTR retroelement reverse transcrip... 64 1e-09
UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa] 63 1e-09
UniRef100_Q84QY1 Hypothetical protein OSJNBa0093I13.26 [Oryza sa... 60 2e-08
UniRef100_O23410 STRONG homology to reverse transcriptase [Arabi... 59 3e-08
UniRef100_Q7X794 OSJNBa0035I04.8 protein [Oryza sativa] 59 3e-08
UniRef100_Q851T5 Putative reverse transcriptase [Oryza sativa] 59 3e-08
UniRef100_Q7XNI4 OSJNBb0032D24.9 protein [Oryza sativa] 57 7e-08
UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana] 57 1e-07
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 56 2e-07
UniRef100_Q7XF82 Putative retroelement [Oryza sativa] 56 2e-07
UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa] 55 3e-07
UniRef100_Q7XE51 Putative non-LTR retroelement reverse transcrip... 55 3e-07
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha... 55 4e-07
UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa] 55 4e-07
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 55 4e-07
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 54 6e-07
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 54 8e-07
UniRef100_Q60E26 Hypothetical protein OSJNBb0012L23.11 [Oryza sa... 54 1e-06
UniRef100_Q84T47 Putative reverse transcriptase [Oryza sativa] 52 2e-06
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 52 3e-06
>UniRef100_Q8H807 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 603
Score = 63.5 bits (153), Expect = 1e-09
Identities = 27/89 (30%), Positives = 51/89 (56%), Gaps = 1/89 (1%)
Query: 31 WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
W G + L W + PK+ GGLG+++ ++ N +L K + L+ + G +W ++L
Sbjct: 280 WQSDGHKRKYRLARWSVICTPKDCGGLGIQNLNVQNKCLLSKWLYKLINEDG-VWQKLLR 338
Query: 91 QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
+KYL+ K++ + + GDS+ W G++ K
Sbjct: 339 KKYLAKKTITLVEKQPGDSHFWAGLMEVK 367
>UniRef100_Q7X7L4 OSJNBa0072D21.1 protein [Oryza sativa]
Length = 710
Score = 63.2 bits (152), Expect = 1e-09
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 30 IWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVL 89
++A G + + L W + PKE GGLG+++ L N ML K + L ++G +W +L
Sbjct: 450 LFACGSEHKKYRLAKWSILCKPKECGGLGIQNLDLQNKCMLSKWLYKLWNEEG-VWQNLL 508
Query: 90 SQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
+KYLS K++ + K GDS+ W G++ K
Sbjct: 509 RRKYLSKKTLTHVEKKPGDSHFWSGLMMVK 538
>UniRef100_Q84QY1 Hypothetical protein OSJNBa0093I13.26 [Oryza sativa]
Length = 419
Score = 59.7 bits (143), Expect = 2e-08
Identities = 31/98 (31%), Positives = 52/98 (52%), Gaps = 3/98 (3%)
Query: 24 KNIRSCIWAKGGQTHS--WYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDK 81
K +R + G H + L W + PK+ GGLG+ + + N L K + L+ ++
Sbjct: 215 KELRKNLVVGKGDDHKKKYRLTRWDIICQPKDQGGLGIHNLEIQNKCFLSKWLYKLINEE 274
Query: 82 GKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
G +W +L +KYL NKS+ + K+GDS+ W ++ K
Sbjct: 275 G-VWQDLLKRKYLYNKSITQVEKKQGDSHFWSELMKVK 311
>UniRef100_O23410 STRONG homology to reverse transcriptase [Arabidopsis thaliana]
Length = 929
Score = 58.9 bits (141), Expect = 3e-08
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 3 SLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRST 62
S+P+ + L + DK R+ +W + +L+ W +V PK GGLGLR++
Sbjct: 597 SIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRAS 656
Query: 63 SLNNIAMLEKLVESLLRDKGKLWGRVLSQKY 93
N A+L K+ LL DK LW RVL +KY
Sbjct: 657 KDMNRALLAKVGWRLLNDKVSLWARVLRRKY 687
>UniRef100_Q7X794 OSJNBa0035I04.8 protein [Oryza sativa]
Length = 357
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/89 (34%), Positives = 47/89 (51%), Gaps = 1/89 (1%)
Query: 31 WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
W + L W + PKE GGLG+++ L N ML K + L ++G +W +L
Sbjct: 98 WQCEEHKKKYRLAKWSILCKPKECGGLGIQNLELQNKYMLSKWLYKLWNEEG-VWQNLLR 156
Query: 91 QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
+KYLS K++ K GDS+ W G++ K
Sbjct: 157 RKYLSKKTLTHVDKKSGDSHFWSGLMMVK 185
>UniRef100_Q851T5 Putative reverse transcriptase [Oryza sativa]
Length = 427
Score = 58.5 bits (140), Expect = 3e-08
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 31 WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
W + L W + PKE GGLG+++ L N ML K + L ++ ++W +L
Sbjct: 214 WQCEEHKKKYRLAKWSILCKPKECGGLGIQNLELQNKCMLSKWLYKLWNEE-RVWQNLLR 272
Query: 91 QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
+KYLS K++ + K GDS+ W G++ K
Sbjct: 273 RKYLSKKTLTHVEKKPGDSHFWSGLMMVK 301
>UniRef100_Q7XNI4 OSJNBb0032D24.9 protein [Oryza sativa]
Length = 221
Score = 57.4 bits (137), Expect = 7e-08
Identities = 28/73 (38%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Query: 47 EVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKR 106
E S PKE GGLG+ + L N +L K V L+ ++G +W +L +KYL+ K + +
Sbjct: 31 ESSRPKECGGLGIHNLELQNKCLLSKWVYKLINEEG-VWQNLLMKKYLAKKCITQVDKQP 89
Query: 107 GDSYIWKGIVSAK 119
GDS+ W G+++ K
Sbjct: 90 GDSHFWSGLMAVK 102
>UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 57.0 bits (136), Expect = 1e-07
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 7 LEKNEFTFKLHLHLEYDKNIR-------SCIWAKGGQTHSWYLVPWCEVSCPKENGGLGL 59
LEK++ F ++ E K I +C W K + H LV W +V PK+ GGLG+
Sbjct: 156 LEKSKIFFSKNVSRELGKLISDESGIQSTCDWGKKKKQH---LVKWSKVCSPKKEGGLGV 212
Query: 60 RSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKY 93
R+ N A++ K+ LL++K LW VL +KY
Sbjct: 213 RAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY 246
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 56.2 bits (134), Expect = 2e-07
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 30 IWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVL 89
+W + ++LV W V P++ GGLG+ N AML K + L ++G W ++
Sbjct: 632 LWQEDQGIRKYHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENEEG-WWQEII 690
Query: 90 SQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
KY S+K + + K G S+ W+G++ K
Sbjct: 691 YAKYCSDKPLSGLRLKAGSSHFWQGVMEVK 720
>UniRef100_Q7XF82 Putative retroelement [Oryza sativa]
Length = 586
Score = 55.8 bits (133), Expect = 2e-07
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 18 LHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESL 77
L + ++K+ CI K + S Y + +C + GG+G+ + NIA+L K + +L
Sbjct: 299 LKINFNKSEVFCI-GKAVERQSMYSEIF---TCKIDQGGMGILDLEIMNIALLGKWLWNL 354
Query: 78 LRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
+K W +L KYLS K++L K K GDS+ W+G++ K
Sbjct: 355 -ENKDGWWQEILRDKYLSKKTLLGMKKKPGDSHFWQGLMEIK 395
>UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa]
Length = 1185
Score = 55.5 bits (132), Expect = 3e-07
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 45 WCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKY 104
W + PK+ GGLG R N AML K + L D L RV+ KY + ++L +
Sbjct: 659 WWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRARP 718
Query: 105 KRGDSYIWKGIVS 117
K+G SY W+ I+S
Sbjct: 719 KKGSSYAWQSILS 731
>UniRef100_Q7XE51 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1652
Score = 55.5 bits (132), Expect = 3e-07
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 31 WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
W + L W + PKE GGLG+++ + N +L K + L+ ++G +W +L
Sbjct: 1542 WQCDEHKKKYRLARWSVLCKPKECGGLGIQNLEIQNKCLLSKWLYKLINEEG-VWQDILR 1600
Query: 91 QKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
KYL+ K++ + GDS+ W G++ +
Sbjct: 1601 NKYLTKKTITQVEKCPGDSHFWAGLMGVR 1629
>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
Length = 1294
Score = 55.1 bits (131), Expect = 4e-07
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 3 SLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRST 62
S+P+ + F L++ E + + + W K + + W + K+ GGLG R
Sbjct: 1161 SMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDL 1220
Query: 63 SLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVS 117
+ N A+L K V ++ + L+ R++ +Y S+L K +R SY W +++
Sbjct: 1221 AKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLA 1275
>UniRef100_Q7XMG7 OSJNBa0028I23.15 protein [Oryza sativa]
Length = 593
Score = 55.1 bits (131), Expect = 4e-07
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 31 WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKL-WGRVL 89
W + L W + PKE GGLG+++ + N + LLR KL W +L
Sbjct: 277 WQSDEHKKKYRLARWSVLCKPKECGGLGIQNLEVQN--------KCLLRGLAKLVWQNLL 328
Query: 90 SQKYLSNKSVLAGKYKRGDSYIWKGIVSAK 119
+KYL+ K+++ + +RGDS+ W G++ K
Sbjct: 329 RKKYLAKKTIMQVQKQRGDSHFWTGLMGVK 358
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 55.1 bits (131), Expect = 4e-07
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 3 SLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRST 62
S+P+ + F L++ E + + + W K + + W + K+ GGLG R
Sbjct: 1181 SMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDL 1240
Query: 63 SLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIVS 117
+ N A+L K V ++ + L+ R++ +Y S+L K +R SY W +++
Sbjct: 1241 AKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLA 1295
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 54.3 bits (129), Expect = 6e-07
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 31 WAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKGKLWGRVLS 90
W Q + + W ++ PK+ GG G + N A+L K +L++KG L+ RV
Sbjct: 805 WNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQ 864
Query: 91 QKYLSNKSVLAGKYKRGDSYIWKGIV 116
+Y SN L+ SY W+ I+
Sbjct: 865 SRYFSNSDFLSATRGSRPSYAWRSIL 890
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 53.9 bits (128), Expect = 8e-07
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 23 DKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRDKG 82
D+ R+ +W + +L+ W ++ PK GG+GLRS N A++ K+ LL+DK
Sbjct: 682 DRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKE 741
Query: 83 KLWGRVLSQKY 93
LW RV+ +KY
Sbjct: 742 SLWARVVRKKY 752
>UniRef100_Q60E26 Hypothetical protein OSJNBb0012L23.11 [Oryza sativa]
Length = 720
Score = 53.5 bits (127), Expect = 1e-06
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 15 KLHLHLEYDKNIRSCIWAKGGQ----THSWYLVPWCEVSCPKENGGLGLRSTSLNNIAML 70
K+ LH+ D+ R C+W K + THS L W V PK+ GGLG+ + + N A+L
Sbjct: 511 KVILHI--DRARRHCLWRKNNELETRTHS--LAAWDIVCKPKKKGGLGIINLEIQNTALL 566
Query: 71 EKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGI 115
K + ++ W +++ KY N +K S+ WK I
Sbjct: 567 MKHLHKFFNNRDLPWVQLIWNKYYINSDKPPHAHKEKGSFWWKDI 611
>UniRef100_Q84T47 Putative reverse transcriptase [Oryza sativa]
Length = 746
Score = 52.4 bits (124), Expect = 2e-06
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 23 DKNIRSCIWAKGGQ--THSWYLVPWCEVSCPKENGGLGLRSTSLNNIAMLEKLVESLLRD 80
D+ R C+W K +S L W V PK GGLG+ + L NIA+L K ++
Sbjct: 572 DRARRHCLWRKSPNLSANSHSLAAWDLVCRPKSKGGLGIINLELQNIALLMKHLDKFYNR 631
Query: 81 KGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIV 116
K W ++ KY ++K + S+ WK I+
Sbjct: 632 KDVPWVNLIWNKYYASKDTPPHALRETGSFWWKDIL 667
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 52.0 bits (123), Expect = 3e-06
Identities = 32/116 (27%), Positives = 51/116 (43%)
Query: 1 IGSLPLLEKNEFTFKLHLHLEYDKNIRSCIWAKGGQTHSWYLVPWCEVSCPKENGGLGLR 60
+ ++P + F + L + +R W+ H V W +++ PK+ GGL +R
Sbjct: 252 VTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGLAIR 311
Query: 61 STSLNNIAMLEKLVESLLRDKGKLWGRVLSQKYLSNKSVLAGKYKRGDSYIWKGIV 116
NIA+L K +L+ L RV KY + +L K SY WK I+
Sbjct: 312 DLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSIL 367
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.318 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,008,737
Number of Sequences: 2790947
Number of extensions: 8203126
Number of successful extensions: 16069
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15937
Number of HSP's gapped (non-prelim): 140
length of query: 119
length of database: 848,049,833
effective HSP length: 95
effective length of query: 24
effective length of database: 582,909,868
effective search space: 13989836832
effective search space used: 13989836832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0248.1