BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0237.11
(176 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_P46279 DNA-directed RNA polymerase II 19 kDa polypepti... 352 2e-96
UniRef100_P38421 DNA-directed RNA polymerase II 19 kDa polypepti... 334 7e-91
UniRef100_Q6ATY6 Putative RNA polymerase II subunit 5 [Oryza sat... 333 1e-90
UniRef100_P62487 DNA-directed RNA polymerase II 19 kDa polypepti... 209 2e-53
UniRef100_Q7ZW41 DNA-directed RNA polymerase II 19 kDa polypepti... 209 2e-53
UniRef100_Q61WZ1 Hypothetical protein CBG04195 [Caenorhabditis b... 206 2e-52
UniRef100_Q9VFB5 CG31155-PA [Drosophila melanogaster] 205 4e-52
UniRef100_Q9N3C9 Hypothetical protein Y54E10BR.6 [Caenorhabditis... 203 1e-51
UniRef100_UPI0000363CBC UPI0000363CBC UniRef100 entry 200 1e-50
UniRef100_UPI0000244C56 UPI0000244C56 UniRef100 entry 198 4e-50
UniRef100_Q7PYV3 ENSANGP00000017695 [Anopheles gambiae str. PEST] 198 4e-50
UniRef100_O14459 DNA-directed RNA polymerase II 19 kDa polypepti... 181 9e-45
UniRef100_Q6BIU6 Similar to tr|Q9C474 Candida albicans RNA polym... 177 1e-43
UniRef100_Q9C474 RNA polymerase II subunit 7 [Candida albicans] 175 4e-43
UniRef100_UPI00003C245F UPI00003C245F UniRef100 entry 174 1e-42
UniRef100_UPI00004301D8 UPI00004301D8 UniRef100 entry 160 1e-38
UniRef100_UPI000036EE16 UPI000036EE16 UniRef100 entry 160 2e-38
UniRef100_Q6MV30 Probable DNA-directed RNA polymerase II chain R... 158 5e-38
UniRef100_UPI000023E344 UPI000023E344 UniRef100 entry 152 4e-36
UniRef100_Q753Q2 AFR402Cp [Ashbya gossypii] 150 2e-35
>UniRef100_P46279 DNA-directed RNA polymerase II 19 kDa polypeptide [Glycine max]
Length = 176
Score = 352 bits (904), Expect = 2e-96
Identities = 171/176 (97%), Positives = 174/176 (98%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176
>UniRef100_P38421 DNA-directed RNA polymerase II 19 kDa polypeptide [Arabidopsis
thaliana]
Length = 176
Score = 334 bits (856), Expect = 7e-91
Identities = 159/175 (90%), Positives = 170/175 (96%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFFHIVLERNMQLHPR+FGRNL++NLV+KLMKDVEGTCSGRHGFVVA+TGI+ +GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVA 175
+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP A
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAA 175
>UniRef100_Q6ATY6 Putative RNA polymerase II subunit 5 [Oryza sativa]
Length = 177
Score = 333 bits (853), Expect = 1e-90
Identities = 161/175 (92%), Positives = 172/175 (98%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFFHIVLERNMQLHPR+FG +LRD LV+KL+KDVEGTCSGRHGFVVA+TG+E+VGKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
+GTG+VTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVA 175
SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DP A
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGA 175
>UniRef100_P62487 DNA-directed RNA polymerase II 19 kDa polypeptide [Homo sapiens]
Length = 172
Score = 209 bits (532), Expect = 2e-53
Identities = 95/172 (55%), Positives = 131/172 (75%), Gaps = 1/172 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MF+HI LE + LHPRYFG NL + + KL +VEGTC+G++GFV+AVT I+N+G G+I+
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+ F+S H IP +MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 171
+ + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
>UniRef100_Q7ZW41 DNA-directed RNA polymerase II 19 kDa polypeptide [Brachydanio
rerio]
Length = 172
Score = 209 bits (532), Expect = 2e-53
Identities = 96/172 (55%), Positives = 131/172 (75%), Gaps = 1/172 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MF+HI LE + LHPRYFG NL + + KL +VEGTC+G++GFV+AVT I+N+G G+I+
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+ F+S H IP +MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 171
+ + P Y T D V IQ+D E+RLKI+GTRVD +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
>UniRef100_Q61WZ1 Hypothetical protein CBG04195 [Caenorhabditis briggsae]
Length = 197
Score = 206 bits (525), Expect = 2e-52
Identities = 92/170 (54%), Positives = 129/170 (75%), Gaps = 1/170 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFFH+ L+ + LHP+YFG NL + + AKL +VEGTC+G++GFV+AVT I+ +G GLI+
Sbjct: 24 MFFHLSLDHEVCLHPKYFGPNLNETIKAKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
G GFV +PV+Y+ +VFRPFKG++++ VVT VNK+G F + GP+ F+S H IP DMEF
Sbjct: 84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFD 143
Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
+ + P Y T+D + I+ D E+R+K+IGTRVDA +IF IGT+ DDFLG+
Sbjct: 144 PNSEKPCYKTNDEATVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLGL 193
>UniRef100_Q9VFB5 CG31155-PA [Drosophila melanogaster]
Length = 173
Score = 205 bits (522), Expect = 4e-52
Identities = 94/173 (54%), Positives = 132/173 (75%), Gaps = 1/173 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MF+HI LE+ + LHPRYFG L + + KL +VEGTC+G++GFV+AVT I+ +G G+I+
Sbjct: 1 MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTTIDQIGSGVIQ 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF- 119
G GFV +PVKY+ +VFRPFKGE+L+AVV +NK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 120 QSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIND 172
+G+ P Y + D V I + ++RLKI+GTRVDAT IF IGT+ DD+LG++++
Sbjct: 121 PNGNPPCYKSKDEDVVISGEDKIRLKIVGTRVDATGIFAIGTLMDDYLGLVSN 173
>UniRef100_Q9N3C9 Hypothetical protein Y54E10BR.6 [Caenorhabditis elegans]
Length = 197
Score = 203 bits (517), Expect = 1e-51
Identities = 91/170 (53%), Positives = 128/170 (74%), Gaps = 1/170 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFFH+ L+ + LHP+YFG NL + + KL +VEGTC+G++GFV+AVT I+ +G GLI+
Sbjct: 24 MFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHGLIQ 83
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
G GFV +PV+Y+ +VFRPFKG++++ VVT VNK+G F + GP+ F+S H IP DMEF
Sbjct: 84 PGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDMEFD 143
Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGV 169
+ + P Y T+D + I+ D E+R+K+IGTRVDA +IF IGT+ DDFLG+
Sbjct: 144 PNSEKPCYKTNDEANVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLGL 193
>UniRef100_UPI0000363CBC UPI0000363CBC UniRef100 entry
Length = 174
Score = 200 bits (509), Expect = 1e-50
Identities = 93/169 (55%), Positives = 126/169 (74%), Gaps = 1/169 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
+F I LE + LHPRYFG NL + + KL +VEGTC+G++GFV+AVT I+N+G G+I+
Sbjct: 4 LFEQISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 63
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+ F+S H IP +MEF
Sbjct: 64 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 123
Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 168
+ + P Y T D + IQ+D E+RLKI+GTRVD +IF IG++ DD+LG
Sbjct: 124 PNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLG 172
>UniRef100_UPI0000244C56 UPI0000244C56 UniRef100 entry
Length = 173
Score = 198 bits (504), Expect = 4e-50
Identities = 93/171 (54%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MF+HI LE + LHPRYFG L + + KL +VEGTC+G++GFV+AVT I+++G G I+
Sbjct: 1 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGTIQ 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF- 119
G GFV +PVKY+ +VFRPFKGE+L+A V VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAEIGPLSCFISHHSIPADMQFC 120
Query: 120 QSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170
+G P Y +G I + ++RLKI+GTRVDAT IF IGT+ DD+LG++
Sbjct: 121 PNGAPPCYRAINGESVIAAEDKIRLKIVGTRVDATGIFAIGTLMDDYLGLV 171
>UniRef100_Q7PYV3 ENSANGP00000017695 [Anopheles gambiae str. PEST]
Length = 192
Score = 198 bits (504), Expect = 4e-50
Identities = 93/171 (54%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MF+HI LE + LHPRYFG L + + KL +VEGTC+G++GFV+AVT I+++G G I+
Sbjct: 20 MFYHISLEHEILLHPRYFGPQLIETVKQKLYTEVEGTCTGKYGFVIAVTTIDDIGSGTIQ 79
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF- 119
G GFV +PVKY+ +VFRPFKGE+L+A V VNK+G FAE GP+ F+S+H IP DM+F
Sbjct: 80 PGQGFVVYPVKYKAIVFRPFKGEVLDATVKQVNKVGMFAEIGPLSCFISHHSIPADMQFC 139
Query: 120 QSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170
+G P Y +G I + ++RLKI+GTRVDAT IF IGT+ DD+LG++
Sbjct: 140 PNGAPPCYRAINGESVIAAEDKIRLKIVGTRVDATGIFAIGTLMDDYLGLV 190
>UniRef100_O14459 DNA-directed RNA polymerase II 19 kDa polypeptide
[Schizosaccharomyces pombe]
Length = 172
Score = 181 bits (458), Expect = 9e-45
Identities = 89/172 (51%), Positives = 124/172 (71%), Gaps = 5/172 (2%)
Query: 2 FFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAV--TGIENVGKGLI 59
FF L + LHP YFG ++D L AKL+ DVEGTCSG++G+++ V + ++ KG +
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 60 RDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF 119
G GF F VKY+ V++RPF+GE+++A+VT VNKMGFFA GP+ +FVS+HL+P DM+F
Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKF 122
Query: 120 Q-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170
+ + PNY+ D I+K S VRLKI+GTR DATEIF I T+K+D+LGV+
Sbjct: 123 DPTANPPNYSGED--QVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYLGVL 172
>UniRef100_Q6BIU6 Similar to tr|Q9C474 Candida albicans RNA polymerase II subunit 7
[Debaryomyces hansenii]
Length = 173
Score = 177 bits (448), Expect = 1e-43
Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 5/171 (2%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEN--VGKGL 58
MFF L N+ LHP YFG + L KL+ DVEGTC+G+ G++V V N VGKG
Sbjct: 1 MFFLKDLSLNLTLHPSYFGPQMDQYLRDKLLSDVEGTCTGQFGYIVCVLDCMNIDVGKGR 60
Query: 59 IRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDME 118
+ G+G F VKY+ VV++PFKGE+++AVVT VNKMGFFA+ GP+ +FVS HLIP DM+
Sbjct: 61 VIPGSGVAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDMK 120
Query: 119 FQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 168
F S + P Y + D + I+K S VRLKI+GTR D EI+ IG+IK+D+LG
Sbjct: 121 FNPSANPPAYVSPDEN--IEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>UniRef100_Q9C474 RNA polymerase II subunit 7 [Candida albicans]
Length = 173
Score = 175 bits (444), Expect = 4e-43
Identities = 91/171 (53%), Positives = 118/171 (68%), Gaps = 5/171 (2%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEN--VGKGL 58
MFF L N+ LHP +FG + L KL+ DVEGTC+G+ G++V V N VGKG
Sbjct: 1 MFFLKDLSLNLTLHPSFFGPQMDQYLREKLLSDVEGTCTGQFGYIVCVLDSMNIDVGKGR 60
Query: 59 IRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDME 118
I TG F VKY+ VV++PFKGE+++AVVT VNKMGFFA+ GP+ +FVS HLIP DM+
Sbjct: 61 IIPSTGMAEFEVKYRAVVWKPFKGEVVDAVVTTVNKMGFFADVGPLSVFVSTHLIPSDMK 120
Query: 119 FQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 168
F S + P Y + D + I+K S VRLKI+GTR D EI+ IG+IK+D+LG
Sbjct: 121 FNPSANPPAYVSPDEN--IEKGSRVRLKIVGTRTDVNEIYAIGSIKEDYLG 169
>UniRef100_UPI00003C245F UPI00003C245F UniRef100 entry
Length = 170
Score = 174 bits (440), Expect = 1e-42
Identities = 86/168 (51%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFF L +LHP YFG ++ + L KL DVEGTC+G+HG+++ V G+ +VG+G +
Sbjct: 1 MFFLKHLTHKTELHPSYFGPSMVEFLNQKLRDDVEGTCTGKHGYIIKVIGLVDVGQGKVI 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
G+G F YQ VV +PFKGE+++A +T VNKMGFFAE GP+ IFVS+HLIP + +FQ
Sbjct: 61 PGSGLAEFNSTYQAVVLKPFKGEVMDAKITNVNKMGFFAEVGPLNIFVSSHLIPIEYKFQ 120
Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 168
P S S ++ K +VR+KI+GTRVDA EIF IGT+K+D+LG
Sbjct: 121 PESNPPEFVS-ASDRLVKGRKVRIKIVGTRVDANEIFAIGTMKEDYLG 167
>UniRef100_UPI00004301D8 UPI00004301D8 UniRef100 entry
Length = 169
Score = 160 bits (405), Expect = 1e-38
Identities = 82/172 (47%), Positives = 112/172 (64%), Gaps = 4/172 (2%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFF L + LHP YFG L D L KL +DVEGTCSG+HG++++V I ++G+G I
Sbjct: 1 MFFLRELTHTILLHPSYFGAQLEDYLRQKLYEDVEGTCSGKHGYIISVITITDIGEGKII 60
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
TG F +Y +V +PFKGE+++A V MGFFA GP+Q+FVS HL DM+F
Sbjct: 61 PSTGQAKFKTRYTAIVMKPFKGEVVDAKVV---NMGFFAMVGPLQVFVSCHLTHSDMKFD 117
Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIND 172
P S+ + IQKD++VR++I+G RV+A ++F IGTIK D+LG I D
Sbjct: 118 PSVSPPCYRSNDEI-IQKDTKVRIQIVGCRVEANDMFAIGTIKKDYLGQIRD 168
>UniRef100_UPI000036EE16 UPI000036EE16 UniRef100 entry
Length = 132
Score = 160 bits (404), Expect = 2e-38
Identities = 72/131 (54%), Positives = 101/131 (76%), Gaps = 1/131 (0%)
Query: 42 HGFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEA 101
+GFV+AVT I+N+G G+I+ G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E
Sbjct: 2 YGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEI 61
Query: 102 GPVQIFVSNHLIPDDMEFQ-SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIG 160
GP+ F+S H IP +MEF + + P Y T D + IQ+D E+RLKI+GTRVD +IF IG
Sbjct: 62 GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIG 121
Query: 161 TIKDDFLGVIN 171
++ DD+LG+++
Sbjct: 122 SLMDDYLGLVS 132
>UniRef100_Q6MV30 Probable DNA-directed RNA polymerase II chain Rpb7 [Neurospora
crassa]
Length = 167
Score = 158 bits (400), Expect = 5e-38
Identities = 76/168 (45%), Positives = 113/168 (67%), Gaps = 1/168 (0%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFF LER + LHP YFGRN+ + + KL+KDVEGTC+G + +++A+ +V +G I
Sbjct: 1 MFFLHNLERRVTLHPSYFGRNMHELVTTKLVKDVEGTCAGDY-YIIAIMDAFDVSEGRIL 59
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
G G F VKY+ VV+RPFKGE+++A+V +N GFF +AGP+ IFVS+HL+P+++ F
Sbjct: 60 PGNGLAEFTVKYRAVVWRPFKGEVVDAIVFSINPHGFFCQAGPLSIFVSSHLMPEEIHFD 119
Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLG 168
P T++ + I+ + VR+KI G R + E++ IG+I DFLG
Sbjct: 120 PNATPPQFTNNADMVIEPGTHVRVKIGGLRTELGEMYAIGSINGDFLG 167
>UniRef100_UPI000023E344 UPI000023E344 UniRef100 entry
Length = 248
Score = 152 bits (384), Expect = 4e-36
Identities = 76/178 (42%), Positives = 116/178 (64%), Gaps = 7/178 (3%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
MFF LER + LHP + GRN+ + + KL+KDVEGTC+G + F++++ + +G I
Sbjct: 1 MFFLYNLERKVTLHPSFMGRNMHELVTGKLLKDVEGTCAGSY-FIISIMDAFEISEGRIL 59
Query: 61 DGTGFVTFPVKYQCVVFRPFKGEI------LEAVVTMVNKMGFFAEAGPVQIFVSNHLIP 114
G G F V Y+ VV+RPFKGE ++AVV +N GFFA AGP+++FVS HLIP
Sbjct: 60 PGLGMAEFTVGYRAVVWRPFKGETESDLTQVDAVVHSINPQGFFAHAGPLRLFVSAHLIP 119
Query: 115 DDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIND 172
+D+++ P T++ I+ + VR+KIIGTR + E++ IG+IK+D+LG +++
Sbjct: 120 NDVKWDPNATPPQFTNNEDTVIEPQTHVRVKIIGTRTEVGEMWAIGSIKEDYLGPLSN 177
>UniRef100_Q753Q2 AFR402Cp [Ashbya gossypii]
Length = 171
Score = 150 bits (378), Expect = 2e-35
Identities = 76/173 (43%), Positives = 114/173 (64%), Gaps = 5/173 (2%)
Query: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVG--KGL 58
MFF L N+ LHP YFG +R+ L KL+++VEGTC+G+ G+++ V EN+ +G
Sbjct: 1 MFFFKDLSLNITLHPSYFGPRMREYLKTKLLQEVEGTCTGKFGYILCVLDSENIEIERGR 60
Query: 59 IRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDME 118
I G F VKY+ VV++PFKGE+++ +V+ +GF + GP+ +FVS L+P+D+
Sbjct: 61 ILPTDGSAEFTVKYRAVVWKPFKGEVVDGIVSSCTNLGFEVDVGPLSVFVSPFLMPEDLT 120
Query: 119 FQSG-DMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI 170
F SG + P+Y +S+ I K S VRLKI+G R + I+ IG+IK+D+LGVI
Sbjct: 121 FNSGSNPPSYQSSEQI--ITKGSRVRLKIVGARSEVNSIYAIGSIKEDYLGVI 171
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.325 0.144 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295,496,330
Number of Sequences: 2790947
Number of extensions: 11568365
Number of successful extensions: 29228
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 29088
Number of HSP's gapped (non-prelim): 115
length of query: 176
length of database: 848,049,833
effective HSP length: 119
effective length of query: 57
effective length of database: 515,927,140
effective search space: 29407846980
effective search space used: 29407846980
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0237.11