BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.11
(95 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9FKP0 Similarity to plastid-specific ribosomal protei... 102 2e-21
UniRef100_P11892 50S ribosomal protein CL25, chloroplast precurs... 94 1e-18
UniRef100_P82411 Plastid-specific 50S ribosomal protein 6, chlor... 91 7e-18
UniRef100_Q7R3K0 GLP_158_8427_7171 [Giardia lamblia ATCC 50803] 38 0.068
UniRef100_Q9BX69 Caspase recruitment domain protein 6 [Homo sapi... 34 0.75
UniRef100_UPI000021B8D3 UPI000021B8D3 UniRef100 entry 33 1.7
UniRef100_Q6K5Y3 Hypothetical protein OJ2055_H10.18 [Oryza sativa] 33 2.2
UniRef100_P20480 Claret segregational protein [Drosophila melano... 33 2.2
UniRef100_UPI000036967E UPI000036967E UniRef100 entry 32 2.9
UniRef100_Q84YR5 Hypothetical protein OSJNBa0027N13.124 [Oryza s... 32 2.9
UniRef100_UPI000046C5C8 UPI000046C5C8 UniRef100 entry 32 3.7
UniRef100_UPI0000467EB4 UPI0000467EB4 UniRef100 entry 32 3.7
UniRef100_Q82NB9 Putative 3-ketoacyl-CoA thiolase/acetyl-CoA ace... 32 3.7
UniRef100_Q6FPH1 Candida glabrata strain CBS138 chromosome J com... 32 3.7
UniRef100_Q7RMT1 Hypothetical protein [Plasmodium yoelii yoelii] 32 4.9
UniRef100_UPI00002BEBD5 UPI00002BEBD5 UniRef100 entry 31 6.4
UniRef100_UPI000021B71D UPI000021B71D UniRef100 entry 31 6.4
UniRef100_Q9Y2I3 KIAA0977 protein [Homo sapiens] 31 6.4
UniRef100_UPI0000456A31 UPI0000456A31 UniRef100 entry 31 8.3
UniRef100_UPI000036AB2C UPI000036AB2C UniRef100 entry 31 8.3
>UniRef100_Q9FKP0 Similarity to plastid-specific ribosomal protein 6
(AT5g17870/MPI7_10) (Plastid-specific ribosomal protein
6 (Psrp-6)-like) [Arabidopsis thaliana]
Length = 106
Score = 102 bits (254), Expect = 2e-21
Identities = 53/89 (59%), Positives = 66/89 (73%), Gaps = 12/89 (13%)
Query: 6 SCSSIFG---VAMAAAPP----QMERRGNG-----VIVCSSRPQKKATAHHRKSRPRKSQ 53
S S+IFG V +AA+P Q+ + GNG VI CSSRPQKK+TAHHRK+RP+K+Q
Sbjct: 2 SVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQ 61
Query: 54 PWDINRKPTVYAPLPPLPSDWTLVVSAAD 82
PWDI RKPTVYAPLPPLP++W+ A+D
Sbjct: 62 PWDIKRKPTVYAPLPPLPAEWSPFTLASD 90
>UniRef100_P11892 50S ribosomal protein CL25, chloroplast precursor [Pisum sativum]
Length = 104
Score = 93.6 bits (231), Expect = 1e-18
Identities = 54/102 (52%), Positives = 69/102 (66%), Gaps = 12/102 (11%)
Query: 4 LSSCSSIFGVAMAAAPP--------QMERR---GNGVIVCSSRPQKKATAHHRKSRPRKS 52
++S SSIFG ++ AP + ERR G +I CSSRPQKK+TAHH K+RPRKS
Sbjct: 1 MASVSSIFGCGVSMAPNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKS 60
Query: 53 QPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPS 94
+ D NRKPTVYAPLPPLP D+T+V+ ADAS+ + P+
Sbjct: 61 RLSDRNRKPTVYAPLPPLPPDFTIVI-PADASTVDFTPPPPT 101
>UniRef100_P82411 Plastid-specific 50S ribosomal protein 6, chloroplast precursor
[Spinacia oleracea]
Length = 116
Score = 90.9 bits (224), Expect = 7e-18
Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 8 SSIFGVAMAAAPPQMERRGNGVIV--CSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYA 65
SS+ G + P G GVI CSSRPQKK TAHH K+RP+K+ WDI R P VY
Sbjct: 21 SSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYP 80
Query: 66 PLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
PLPPLP++WT+V SA D + + + SA
Sbjct: 81 PLPPLPAEWTIVSSAVDEADSSSSTTSSSA 110
>UniRef100_Q7R3K0 GLP_158_8427_7171 [Giardia lamblia ATCC 50803]
Length = 418
Score = 37.7 bits (86), Expect = 0.068
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 12 GVAMAAAPPQMERRGNGVIVCSS-RPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPL 70
G + AA+ + G G + S PQK R + + +QP R+P V P+PP
Sbjct: 34 GASSAASIQSVTFAGLGTAITSGPAPQKSGQTKARTTSGKPAQPGSAPRQPQVRVPMPPH 93
Query: 71 PSDWTLVVSAADASSDEAVAVTPSA 95
S + + +SS + V P+A
Sbjct: 94 ASHGPMASTKLTSSSTSSTLVKPNA 118
>UniRef100_Q9BX69 Caspase recruitment domain protein 6 [Homo sapiens]
Length = 1037
Score = 34.3 bits (77), Expect = 0.75
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Query: 32 CSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEA 88
C S+P + + + ++P+ SQPW KP+ P PP P + S A A +A
Sbjct: 975 CQSQPSQTKPSPCKSTQPKPSQPWPPQSKPS--QPRPPQPKSSSTNPSQAKAHHSKA 1029
>UniRef100_UPI000021B8D3 UPI000021B8D3 UniRef100 entry
Length = 586
Score = 33.1 bits (74), Expect = 1.7
Identities = 19/47 (40%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Query: 29 VIVCSSRPQKKATAHHRKSRPRKSQ-PWDINR-KPTVYAPLPPLPSD 73
V + +S PQ HH + R +S+ W N P V PLPPLP D
Sbjct: 25 VTLLTSEPQPPTRQHHSRLRQMRSRLSWHGNFFTPAVTLPLPPLPDD 71
>UniRef100_Q6K5Y3 Hypothetical protein OJ2055_H10.18 [Oryza sativa]
Length = 144
Score = 32.7 bits (73), Expect = 2.2
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 8/69 (11%)
Query: 13 VAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVY-------A 65
+A AA P + RR + ++VC++ ++K T P + + R+P ++
Sbjct: 36 LARAAVPSRRRRRWDALVVCAAPDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKT 95
Query: 66 PLP-PLPSD 73
PLP PLP+D
Sbjct: 96 PLPHPLPAD 104
>UniRef100_P20480 Claret segregational protein [Drosophila melanogaster]
Length = 700
Score = 32.7 bits (73), Expect = 2.2
Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDIN----RKPTVYAP-LPPLPSD 73
P +ERRG G S P K HR R DIN K T AP LP +PS
Sbjct: 65 PQVLERRGGGARAASPEPMKLG---HRAKLRRSRSACDINELRGNKRTAAAPSLPSIPSK 121
Query: 74 WTLVVSAADASSDEAV 89
+ + A SS V
Sbjct: 122 VSRLGGALTVSSQRLV 137
>UniRef100_UPI000036967E UPI000036967E UniRef100 entry
Length = 1225
Score = 32.3 bits (72), Expect = 2.9
Identities = 20/49 (40%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Query: 42 AHHRKSRPRKSQPWDI--NRKPTVYAPLPPLPSDWTLVVSAADASSDEA 88
A R R +P D+ RKP APLPP + +T V SAAD+ A
Sbjct: 52 APRRAMDGRTPRPQDVPAGRKPKAKAPLPPAETKYTDVSSAADSVESTA 100
>UniRef100_Q84YR5 Hypothetical protein OSJNBa0027N13.124 [Oryza sativa]
Length = 298
Score = 32.3 bits (72), Expect = 2.9
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 32 CSSRPQKKATAHHRK-SRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDE 87
C P A+ R+ SRP +S D R P P PPL S +SAA SDE
Sbjct: 213 CRHGPALSASLRCRRPSRPPRSPLVDAGRAPPCRRPPPPLRSSSKRTLSAAAVPSDE 269
>UniRef100_UPI000046C5C8 UPI000046C5C8 UniRef100 entry
Length = 883
Score = 32.0 bits (71), Expect = 3.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 30 IVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAP 66
I SSR Q K+T + RPRK + +I R P +Y P
Sbjct: 35 IYMSSRVQLKSTKLQHRKRPRKRKKSEIYRTPVLYNP 71
>UniRef100_UPI0000467EB4 UPI0000467EB4 UniRef100 entry
Length = 865
Score = 32.0 bits (71), Expect = 3.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 30 IVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAP 66
I SSR Q K+T + RPRK + +I R P +Y P
Sbjct: 35 IFMSSRVQLKSTKLQHRKRPRKRKKSEIYRTPVLYHP 71
>UniRef100_Q82NB9 Putative 3-ketoacyl-CoA thiolase/acetyl-CoA acetyltransferase
[Streptomyces avermitilis]
Length = 399
Score = 32.0 bits (71), Expect = 3.7
Identities = 20/67 (29%), Positives = 31/67 (45%), Gaps = 1/67 (1%)
Query: 1 MSVLSSCSSIFGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRK 60
M+V CSS +A+A A Q+ G V V + R + R + PW + K
Sbjct: 84 MTVDRQCSSGL-MAIATAAKQIVTDGMQVAVGGGVESISLVQNDRMNTHRMADPWLVEHK 142
Query: 61 PTVYAPL 67
P++Y P+
Sbjct: 143 PSIYMPM 149
>UniRef100_Q6FPH1 Candida glabrata strain CBS138 chromosome J complete sequence
[Candida glabrata]
Length = 661
Score = 32.0 bits (71), Expect = 3.7
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 39 KATAHHRKSRPRKSQPWDINRKPTVYAPL 67
+ ++HHRK RP P DINR ++P+
Sbjct: 466 RTSSHHRKPRPTSYYPVDINRSANNFSPI 494
>UniRef100_Q7RMT1 Hypothetical protein [Plasmodium yoelii yoelii]
Length = 803
Score = 31.6 bits (70), Expect = 4.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 33 SSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAP 66
SSR Q K+T + RPRK + +I R P +Y P
Sbjct: 2 SSRVQLKSTKLQHRKRPRKKKKSEIYRTPVLYHP 35
>UniRef100_UPI00002BEBD5 UPI00002BEBD5 UniRef100 entry
Length = 105
Score = 31.2 bits (69), Expect = 6.4
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 30 IVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLP-PLP-SDWTLVVSAADASSDE 87
I+ +S A + S PR +Q R+PT AP+P P P + T V+AA A +DE
Sbjct: 38 IIAASDSHVDALVDTQSSAPRTAQ-----RRPTAPAPIPEPAPIAAATATVAAAQAPADE 92
Query: 88 A-VAVTPS 94
A A TP+
Sbjct: 93 APQAETPA 100
>UniRef100_UPI000021B71D UPI000021B71D UniRef100 entry
Length = 1357
Score = 31.2 bits (69), Expect = 6.4
Identities = 20/84 (23%), Positives = 40/84 (46%), Gaps = 3/84 (3%)
Query: 8 SSIFGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPL 67
+S+ V+++ PP + V+ + + + A+ S+ ++ P +RKP P+
Sbjct: 141 ASVTSVSISPCPPPVSSLRPDVLKAAPQNSETASLRRPASKHSEASPAAASRKPREAPPV 200
Query: 68 PPLPSDWTLVVSAADASSDEAVAV 91
P +PS+ + A +S D V V
Sbjct: 201 PNMPSNH---IHIATSSMDGNVCV 221
>UniRef100_Q9Y2I3 KIAA0977 protein [Homo sapiens]
Length = 1207
Score = 31.2 bits (69), Expect = 6.4
Identities = 23/73 (31%), Positives = 33/73 (44%), Gaps = 7/73 (9%)
Query: 16 AAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWT 75
A+ P + RR + +R + R RP+ + RKP APLPP + +T
Sbjct: 20 ASPTPAVTRR----LGAGARAAPRRAMDGRTPRPQDAPA---RRKPKAKAPLPPAETKYT 72
Query: 76 LVVSAADASSDEA 88
V SAAD+ A
Sbjct: 73 DVSSAADSVESTA 85
>UniRef100_UPI0000456A31 UPI0000456A31 UniRef100 entry
Length = 1860
Score = 30.8 bits (68), Expect = 8.3
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 26 GNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAA 81
GNG RP+ T R S P+K++P N +P P P P + S A
Sbjct: 1204 GNGGDGKEERPEGSPTLFKRMSSPKKAKPTKGNGEPATKLPPPETPDACLKLASRA 1259
>UniRef100_UPI000036AB2C UPI000036AB2C UniRef100 entry
Length = 1901
Score = 30.8 bits (68), Expect = 8.3
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 26 GNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAA 81
GNG RP+ T R S P+K++P N +P P P P + S A
Sbjct: 1225 GNGGDGKEERPEGSPTLFKRMSSPKKAKPTKGNGEPATKLPPPETPDACLKLASRA 1280
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.314 0.124 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,842,344
Number of Sequences: 2790947
Number of extensions: 5508449
Number of successful extensions: 16708
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16680
Number of HSP's gapped (non-prelim): 33
length of query: 95
length of database: 848,049,833
effective HSP length: 71
effective length of query: 24
effective length of database: 649,892,596
effective search space: 15597422304
effective search space used: 15597422304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0233.11