BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0212.11
         (511 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum]                              101  4e-20
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]              87  1e-15
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo...    87  1e-15
UniRef100_Q94FM1 Pol polyprotein [Citrus paradisi]                     75  6e-12
UniRef100_Q7Y173 Putative gag-pol polyprotein [Oryza sativa]           73  2e-11
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]                             73  2e-11
UniRef100_Q6BSV0 Similar to tr|Q8TFJ9 Debaryomyces hansenii Poly...    72  4e-11
UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]               71  8e-11
UniRef100_Q7X5Z0 OSJNBb0071D01.3 protein [Oryza sativa]                70  2e-10
UniRef100_Q7XLR4 OSJNBb0093G06.7 protein [Oryza sativa]                69  2e-10
UniRef100_Q43491 DNA sequence with open reading frame [Hordeum v...    69  4e-10
UniRef100_Q8TFJ9 Polyprotein [Debaryomyces hansenii var. hansenii]     68  5e-10
UniRef100_Q9XEC2 Putative transposon protein [Arabidopsis thaliana]    68  7e-10
UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidop...    67  9e-10
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop...    67  1e-09
UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]               67  1e-09
UniRef100_O81903 Putative transposable element [Arabidopsis thal...    67  2e-09
UniRef100_Q94GF9 Putative gag-pol polyprotein [Oryza sativa]           67  2e-09
UniRef100_Q9AYJ5 Putative pol polyprotein [Oryza sativa]               66  2e-09
UniRef100_Q7X670 OSJNBa0093P23.9 protein [Oryza sativa]                66  2e-09

>UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum]
          Length = 1338

 Score =  101 bits (252), Expect = 4e-20
 Identities = 54/109 (49%), Positives = 70/109 (63%)

Query: 361  DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
            D D +KS SGYLI F GG V+ +S+L +C+ALST EAEFI  TEACKE + +KK   +  
Sbjct: 1187 DVDSRKSTSGYLINFSGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELG 1246

Query: 421  LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
             S+     F   +    L K+ +FHS SKHIDVR +WIRD L  ++L L
Sbjct: 1247 FSQDGYQLFCDSQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRL 1295



 Score = 95.1 bits (235), Expect = 4e-18
 Identities = 49/104 (47%), Positives = 76/104 (72%), Gaps = 4/104 (3%)

Query: 4   KK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDF 63
           +K ++ M++E+KS H+N +F LVKLPKGK+AL+NKW+  +K + +++  R+KA L+V+ F
Sbjct: 825 EKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGF 884

Query: 64  RHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
              K +D +E    +VKM+ I  VL L A+L+LEV+Q+DVK AF
Sbjct: 885 NQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAF 928



 Score = 36.6 bits (83), Expect = 1.8
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 201  VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
            +K+QL + F MKD+G A  ILG+RI RDR+
Sbjct: 1026 LKEQLSKFFAMKDLGPAKQILGMRIMRDRE 1055


>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
          Length = 1328

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/101 (45%), Positives = 66/101 (64%), Gaps = 4/101 (3%)

Query: 7   MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
           M  M  EM S   N ++ LV+LPKGK+ L+ KW+  +K + N   +RYKA L+V+ F   
Sbjct: 828 MKAMHEEMGSLQKNGTYQLVELPKGKRPLKCKWVFKLKKDGNGKLVRYKARLVVKGFEQK 887

Query: 67  KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           K +D +E    +VKM+ I  +LS+ A+LDLEV+Q+DVK AF
Sbjct: 888 KGIDFDEIFSPVVKMTSIRTILSIAASLDLEVEQLDVKTAF 928



 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 43/111 (38%), Positives = 67/111 (59%)

Query: 361  DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
            D D +KS + YL  F GG ++ +S+L + +ALST EA++I  TE CKE L LK+  Q+  
Sbjct: 1186 DLDNRKSTTCYLFTFSGGDISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHG 1245

Query: 421  LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
            L +     +   +    L K   +H+T+KHID+R HWIR+ +    L++V+
Sbjct: 1246 LHQKEYVVYCESQSAMDLSKKAMYHATTKHIDMRYHWIREMVDDGSLQVVK 1296



 Score = 36.2 bits (82), Expect = 2.3
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 201  VKKQLGESFFMKDIGAA*HILGIRITRDRQETLDV-RGTLC*RLLQRS*MENAK 253
            ++K   +SF MKD+G A  ILG++I R+ Q+ L +       R+L+R  M++AK
Sbjct: 1026 LRKDFSKSFDMKDLGPAKQILGMKIAREEQKKLGLSHEKYIERVLERFNMKSAK 1079


>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Contains: Protease (EC 3.4.23.-); Reverse transcriptase
           (EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
          Length = 1328

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/101 (45%), Positives = 68/101 (66%), Gaps = 4/101 (3%)

Query: 7   MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
           M  M+ EM+S   N ++ LV+LPKGK+ L+ KW+  +K + +   +RYKA L+V+ F   
Sbjct: 827 MKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQK 886

Query: 67  KSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           K +D +E    +VKM+ I  +LSL A+LDLEV+Q+DVK AF
Sbjct: 887 KGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAF 927



 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 43/111 (38%), Positives = 69/111 (61%)

Query: 361  DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
            D D +KS++GYL  F GG ++ +S+L +C+ALST EAE+I  TE  KE + LK+  Q+  
Sbjct: 1186 DIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELG 1245

Query: 421  LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
            L +     +   +    L K+  +H+ +KHIDVR HWIR+ +    L++++
Sbjct: 1246 LHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 1296


>UniRef100_Q94FM1 Pol polyprotein [Citrus paradisi]
          Length = 297

 Score = 74.7 bits (182), Expect = 6e-12
 Identities = 42/102 (41%), Positives = 61/102 (59%)

Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
           D D ++S SGY+    GG V+ +S L   IALST EAE+I  TEA KE + LK L  D  
Sbjct: 154 DLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLG 213

Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
           + + N   F   +    L K+ T+H+ +KHIDV+ H++R+ +
Sbjct: 214 VIQENIAVFCDNQSAIFLAKNQTYHARTKHIDVKYHYVREII 255


>UniRef100_Q7Y173 Putative gag-pol polyprotein [Oryza sativa]
          Length = 890

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 4/105 (3%)

Query: 3   NKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVED 62
           + K ++VM +E+KS   N  + LV++PKG K +  KW+   KL+S     R+KA L+ + 
Sbjct: 381 SSKWLEVMDDELKSMSHNGVWDLVEIPKGSKTVGCKWVYKTKLDSKGKIERFKARLVAKG 440

Query: 63  FRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           F   + +D NE    + K     IV++LVA  DLE+ Q+DVK AF
Sbjct: 441 FSQREGIDYNETFSPVSKKDSFRIVMALVAHYDLELHQMDVKTAF 485



 Score = 40.8 bits (94), Expect = 0.094
 Identities = 31/107 (28%), Positives = 50/107 (45%), Gaps = 11/107 (10%)

Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
           D KKS SGY+     G ++ KS        ST +AEF+   EA  + + LK L     L 
Sbjct: 746 DTKKSTSGYVFTLANGAISWKSSKQTLTTSSTMQAEFLACYEATGQAVWLKNLIPG--LR 803

Query: 423 RTNTCCFVIVKVRFILRKSPTFHST-------SKHIDVRCHWIRDAL 462
             ++    I    +   K+  F+S+       +KHID++ H ++D +
Sbjct: 804 VVDSISKPI--TLYYDNKAAVFYSSNNKSSGAAKHIDIKYHVVKDRI 848


>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 34/98 (34%), Positives = 64/98 (64%), Gaps = 4/98 (4%)

Query: 10  MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
           M+ E+++ H N ++ LV LP+G+K + NKW+  +K   +    RY+A L+V+ +   + +
Sbjct: 800 MQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGI 859

Query: 70  DSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           D NE    +V+++ + +VL++ AT +L ++Q+DVK AF
Sbjct: 860 DFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAF 897



 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 39/103 (37%), Positives = 58/103 (55%)

Query: 358  YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
            Y  D D  KS +GY+ K  GG V+  S+L   +A ST EAE++  T+A KE + LK L +
Sbjct: 1153 YAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLE 1212

Query: 418  D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRD 460
            +    +     F   +    L ++P FHS +KHI V+ H+IR+
Sbjct: 1213 ELGHKQEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIRE 1255


>UniRef100_Q6BSV0 Similar to tr|Q8TFJ9 Debaryomyces hansenii Polyprotein
           [Debaryomyces hansenii]
          Length = 398

 Score = 72.0 bits (175), Expect = 4e-11
 Identities = 40/118 (33%), Positives = 67/118 (55%), Gaps = 17/118 (14%)

Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD-- 418
           D+  +KS +GY++K+ G  ++ KS+    +ALST EAE++ +TEA KE + + +LF+   
Sbjct: 249 DSSDRKSITGYIVKYGGAPISWKSKKQPTVALSTTEAEYLALTEAIKEAMWMAQLFKQLN 308

Query: 419 -------*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
                   V    N+C         +L + P FH  +KHID+R H+IR+ +I   ++L
Sbjct: 309 IPLKLPIPVYEDNNSC--------ILLAEHPVFHQRTKHIDIRYHFIREHIIQNEIKL 358


>UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]
          Length = 1356

 Score = 70.9 bits (172), Expect = 8e-11
 Identities = 38/105 (36%), Positives = 59/105 (56%)

Query: 358  YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
            Y  D D ++S SGY+    G  V+ K+ L   +A+ST EAE+I + EA KE + +K L Q
Sbjct: 1210 YAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQ 1269

Query: 418  D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
            D  + +     +   +    L K+  +H  +KHIDVR ++IRD +
Sbjct: 1270 DMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVV 1314



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 9/99 (9%)

Query: 12  NEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL---RYKAILMVEDFRHGKS 68
           +EM S   N ++ LV  PK +K +  +W+   KL+S    +   R+KA L+ + +   + 
Sbjct: 860 DEMDSLMKNGTWDLVDKPKDRKIIGCRWL--FKLKSGIPGVEPTRFKARLVAKGYTQREG 917

Query: 69  VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           VD  E+    VK   I I++SLV   DLE++Q+DVK  F
Sbjct: 918 VDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTF 956



 Score = 35.0 bits (79), Expect = 5.1
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 201  VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
            VK+QL   F MKD+G A  ILGI I RDR+
Sbjct: 1054 VKEQLSTEFEMKDMGGASRILGIDIYRDRK 1083


>UniRef100_Q7X5Z0 OSJNBb0071D01.3 protein [Oryza sativa]
          Length = 610

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/105 (37%), Positives = 61/105 (57%), Gaps = 4/105 (3%)

Query: 3   NKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVED 62
           + K ++ M++E+K    N  + LV++PKG K +  KW+   KL+S     R+KA L+ + 
Sbjct: 288 SSKWLEAMEDELKFMSHNGVWDLVEIPKGAKTVGYKWVYKTKLDSKGKIERFKARLVAKG 347

Query: 63  FRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           F   + +D NE    + K     IV++LVA  DLE+ Q+DVK AF
Sbjct: 348 FSQREGIDYNETSSPISKKDSFRIVMALVAHYDLELHQMDVKTAF 392


>UniRef100_Q7XLR4 OSJNBb0093G06.7 protein [Oryza sativa]
          Length = 923

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 40/106 (37%), Positives = 63/106 (58%), Gaps = 4/106 (3%)

Query: 2   DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVE 61
           D++K +  MK+E++S H N  ++LV  P G KA+E KW+   K++ +     YKA L+ +
Sbjct: 689 DSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAK 748

Query: 62  DFRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
            FR  + VD +E    +  +  I IVL++ A  D E+ Q+DVK AF
Sbjct: 749 GFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQMDVKIAF 794


>UniRef100_Q43491 DNA sequence with open reading frame [Hordeum vulgare]
          Length = 153

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 38/106 (35%), Positives = 63/106 (58%), Gaps = 4/106 (3%)

Query: 2   DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVE 61
           D+ + ++ MK+E+ S ++N  + LV L   ++A+ENKWI   K ++N     YKA L+ +
Sbjct: 22  DSNEWLEAMKSEIGSMYENKVWTLVDLLDDRRAIENKWIFKKKTDANDNVTVYKARLVAK 81

Query: 62  DFRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
            FR  + VD  E    +VK+  + I+L++    D E+ Q+DVK AF
Sbjct: 82  GFRQIQGVDYEETFSPVVKLKSVRIMLAIATFYDYEIWQMDVKTAF 127


>UniRef100_Q8TFJ9 Polyprotein [Debaryomyces hansenii var. hansenii]
          Length = 1490

 Score = 68.2 bits (165), Expect = 5e-10
 Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 17/118 (14%)

Query: 361  DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD-- 418
            D   +KS +GY++++ G  ++ KS+    +A+ST EAE++ + EA KE L +  LF +  
Sbjct: 1341 DKSDRKSITGYIVRYGGAPISWKSKKQTTVAMSTTEAEYLALGEATKEALWIIMLFDEMR 1400

Query: 419  -------*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
                    +    N+C         +L + P FHS +KHID+R H+IR+ +I + ++L
Sbjct: 1401 VPLQLPISIHEDNNSC--------ILLAEHPVFHSRTKHIDIRHHFIREHIIKKQIKL 1450



 Score = 46.2 bits (108), Expect = 0.002
 Identities = 29/98 (29%), Positives = 52/98 (52%), Gaps = 9/98 (9%)

Query: 10   MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
            M +EM + + N ++ LV LPK +KA+ N+W+   K +      RYKA L+ + F      
Sbjct: 1005 MDSEMSAHYSNNTWDLVSLPKDRKAIGNRWVFTKKDDG-----RYKARLVAQGFSQVPGE 1059

Query: 70   D----SNEMVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
            D     + +++   ++++L+  A  +  V Q+DV  AF
Sbjct: 1060 DYLDTFSPVIRYESVKLLLAFSAVDNRVVHQMDVDTAF 1097


>UniRef100_Q9XEC2 Putative transposon protein [Arabidopsis thaliana]
          Length = 570

 Score = 67.8 bits (164), Expect = 7e-10
 Identities = 38/105 (36%), Positives = 57/105 (54%)

Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
           Y  D D ++S +GY+    G  V+ KS L   IA+ T EAE++ ITEA KE L ++ L +
Sbjct: 437 YAADLDKRRSTTGYVFTVGGNTVSWKSNLQNTIAIPTTEAEYVAITEAVKEALWMQGLLK 496

Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
           D  + +     +   +    L K   FH  +KHI V+ H+IRD +
Sbjct: 497 DMGVKQDKVLVWSDSQCVISLSKKNMFHERTKHIAVKYHFIRDVI 541



 Score = 47.8 bits (112), Expect = 8e-04
 Identities = 33/98 (33%), Positives = 50/98 (50%), Gaps = 23/98 (23%)

Query: 10  MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
           M +EM S   N ++ +V  PK +K                   RYKA L+   F   K +
Sbjct: 189 MNDEMNSLWKNFTWDIVDRPKDQK-------------------RYKARLVARGFTQRKGI 229

Query: 70  DSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           D +E+    VK + I +++S+VA  DLE++Q+DVK AF
Sbjct: 230 DYDEVFAPVVKHTSIRVLMSIVAQDDLELEQMDVKTAF 267


>UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score = 67.4 bits (163), Expect = 9e-10
 Identities = 37/109 (33%), Positives = 63/109 (56%)

Query: 363  DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
            D ++S +GY+    G  ++ KS+L + +A+S+ EAE++ +TEA KE L LK    +   S
Sbjct: 1195 DTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHS 1254

Query: 423  RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
            +         +    L K+   H  +KHID+R H+IRD + A L+++V+
Sbjct: 1255 QDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLIKVVK 1303


>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 37/114 (32%), Positives = 63/114 (54%)

Query: 358  YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
            Y  D D ++S +G +    G  ++ KS L R +A ST E+E++ +TEA KE + LK L +
Sbjct: 1211 YAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLK 1270

Query: 418  D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
            D    + +   F   +    L K+   H  +KHIDV+ H+IR+ +    +E+++
Sbjct: 1271 DFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLK 1324



 Score = 49.3 bits (116), Expect = 3e-04
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 5/99 (5%)

Query: 10  MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKS 68
           M  E+ S   N ++ +V  P+ ++ +  +WI   KL        R+KA L+ + +   + 
Sbjct: 856 MDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEG 915

Query: 69  VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           +D +E+    VK   I ++LS+VA  DLE++Q+DVK AF
Sbjct: 916 IDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAF 954


>UniRef100_Q7XTM9 OSJNBa0033G05.13 protein [Oryza sativa]
          Length = 1181

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 4/104 (3%)

Query: 361  DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
            D D ++S +GY+    G  V+ K+ L   +ALST EAE++ I+EACKE + L+ L+ +  
Sbjct: 1040 DLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTE-- 1097

Query: 421  LSRTNTC--CFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
            L    +C   F   +    L K   FH  +KHIDVR H+IR  +
Sbjct: 1098 LCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGVI 1141


>UniRef100_O81903 Putative transposable element [Arabidopsis thaliana]
          Length = 1308

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 37/107 (34%), Positives = 60/107 (55%)

Query: 358  YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
            +  D D ++S SGY+    G  V+ KS L   +ALS+ +AEFI +TEA KE + ++ L +
Sbjct: 1164 HAADLDKRRSISGYVFTVGGNTVSWKSSLQHVVALSSTQAEFIALTEAVKEAIWIRGLLE 1223

Query: 418  D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIA 464
            D  L       +   +    L K+  FH  +KH++V+ ++IRD + A
Sbjct: 1224 DMGLQPKPATVWCDSQSAICLSKNNAFHDRTKHVEVKFYFIRDIIEA 1270



 Score = 50.4 bits (119), Expect = 1e-04
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 10  MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKS 68
           MK E+ S   N ++ +V+ PK +K +  +W+  +K         RYKA L+   F   K 
Sbjct: 839 MKEEIDSLLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGVEAQRYKARLVARGFTQQKG 898

Query: 69  VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           +D  E+    VK   I I++S V   D+E++Q+DVK  F
Sbjct: 899 IDYEEVFAPVVKHISIRILMSAVVKDDMELEQMDVKTTF 937


>UniRef100_Q94GF9 Putative gag-pol polyprotein [Oryza sativa]
          Length = 1225

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 7   MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHG 66
           +  MK+EMKS   N  + LV++PKG K +  KW+   K +      R+KA L+ + F   
Sbjct: 743 LKAMKDEMKSMSTNKVWDLVEIPKGAKTVGCKWVYKTKRDPKGNIERFKAGLVAKGFTQR 802

Query: 67  KSVDSNE-----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           + +D NE       K SF  I+++LVA  DLE+ Q+DVK AF
Sbjct: 803 EGIDYNETFSPVSTKDSF-RIIMALVAHYDLELHQMDVKTAF 843



 Score = 38.9 bits (89), Expect = 0.36
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 363  DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ----- 417
            D KKS SGY+     G V+ KS   R  A ST +AE++   EA  + + LK         
Sbjct: 1077 DDKKSTSGYIFTLAKGAVSWKSSKQRVTASSTMQAEYVACYEATGQAIWLKNFIPGLRVV 1136

Query: 418  D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
            D +       C    K       S    +++K+ID++ H +++ +
Sbjct: 1137 DSISKPLKLYC--DNKPAVYYTSSNKSSASAKYIDIKYHVVKEMI 1179


>UniRef100_Q9AYJ5 Putative pol polyprotein [Oryza sativa]
          Length = 1005

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 4/108 (3%)

Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
           +  D D ++S +GY+       ++ K+ L   +A ST EAE++ I EACKE + LK LF 
Sbjct: 861 FAADLDKRRSLTGYVFTISSCAMSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFA 920

Query: 418 D*VLSRTNTC--CFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALI 463
           +  L   ++C   F   +    L K   FH  +KHID++ H++RD ++
Sbjct: 921 E--LCGVDSCIILFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDVVV 966



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 5/99 (5%)

Query: 10  MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLE-SNSTSLRYKAILMVEDFRHGKS 68
           M+ EM+S   N ++ LV LPK KK +  KWI   K   S S   R+KA L+ + F     
Sbjct: 509 MQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIAG 568

Query: 69  VDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
           VD N+    +VK S I    S+VA  DLE++Q+DVK AF
Sbjct: 569 VDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAF 607



 Score = 40.0 bits (92), Expect = 0.16
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQETL 233
           +KKQL   F MKD+GAA  ILG+ ITRDR   L
Sbjct: 703 LKKQLSSEFDMKDLGAAKKILGMEITRDRNSGL 735


>UniRef100_Q7X670 OSJNBa0093P23.9 protein [Oryza sativa]
          Length = 944

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 4/104 (3%)

Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
           D D ++S +GY+    G  V+ K+ L   +ALST EAE++ I+EACKE L L+ L+ +  
Sbjct: 803 DLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEALWLRGLYTE-- 860

Query: 421 LSRTNTC--CFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
           L    +C   F   +    L +   FH  +KHIDVR H+IR  +
Sbjct: 861 LCGVTSCINIFCDSQSAIYLTEDQMFHERTKHIDVRYHFIRGVI 904



 Score = 34.7 bits (78), Expect = 6.7
 Identities = 17/39 (43%), Positives = 24/39 (60%)

Query: 2   DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWI 40
           D  + +  M +EM+S   N ++ LVKLPK KK +  KWI
Sbjct: 620 DCNRWITTMHDEMESLEKNHTWELVKLPKEKKPIRCKWI 658


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.367    0.164    0.593 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,892,572
Number of Sequences: 2790947
Number of extensions: 19333089
Number of successful extensions: 101125
Number of sequences better than 10.0: 595
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 99442
Number of HSP's gapped (non-prelim): 1388
length of query: 511
length of database: 848,049,833
effective HSP length: 132
effective length of query: 379
effective length of database: 479,644,829
effective search space: 181785390191
effective search space used: 181785390191
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 77 (34.3 bits)