BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.20
(162 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q6H7U1 Putative SNF2 domain-containing protein [Oryza ... 117 1e-25
UniRef100_Q9M378 TATA box binding protein (TBP) associated facto... 111 7e-24
UniRef100_UPI00003663A6 UPI00003663A6 UniRef100 entry 100 1e-20
UniRef100_UPI00003663A5 UPI00003663A5 UniRef100 entry 100 1e-20
UniRef100_UPI00002F0E18 UPI00002F0E18 UniRef100 entry 100 1e-20
UniRef100_UPI00001CEBDD UPI00001CEBDD UniRef100 entry 100 2e-20
UniRef100_UPI00001CE638 UPI00001CE638 UniRef100 entry 100 2e-20
UniRef100_UPI000036E84B UPI000036E84B UniRef100 entry 100 2e-20
UniRef100_UPI00003AE32A UPI00003AE32A UniRef100 entry 100 2e-20
UniRef100_Q8BTS9 Mus musculus 2 days neonate thymus thymic cells... 100 2e-20
UniRef100_Q8N6J1 Similar to BTAF1 RNA polymerase II, B-TFIID tra... 100 2e-20
UniRef100_O14981 TBP-associated factor 172 (TAF-172) (TAF(II)170... 100 2e-20
UniRef100_UPI00002B9FC7 UPI00002B9FC7 UniRef100 entry 99 3e-20
UniRef100_Q6BZT4 Yarrowia lipolytica chromosome F of strain CLIB... 98 6e-20
UniRef100_UPI000021A1CE UPI000021A1CE UniRef100 entry 97 1e-19
UniRef100_UPI000042EDAE UPI000042EDAE UniRef100 entry 97 2e-19
UniRef100_Q7S1Z7 Hypothetical protein [Neurospora crassa] 97 2e-19
UniRef100_UPI00003C2019 UPI00003C2019 UniRef100 entry 96 3e-19
UniRef100_UPI000042D0DE UPI000042D0DE UniRef100 entry 95 7e-19
UniRef100_UPI0000236462 UPI0000236462 UniRef100 entry 94 9e-19
>UniRef100_Q6H7U1 Putative SNF2 domain-containing protein [Oryza sativa]
Length = 2057
Score = 117 bits (292), Expect = 1e-25
Identities = 62/96 (64%), Positives = 75/96 (77%), Gaps = 2/96 (2%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLTSADTLVF+EHD N M+D QAMD+A RLGQ KVVNVHRLIMR TLEE+VMS
Sbjct: 1902 HVGGLGLNLTSADTLVFMEHDWNPMKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMS 1961
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGS 98
+RF+VSVANA N S+K+ ++D + +L S
Sbjct: 1962 LQRFKVSVANAVINAENASLKTM--NTDQLLDLFAS 1995
>UniRef100_Q9M378 TATA box binding protein (TBP) associated factor (TAF)-like protein
[Arabidopsis thaliana]
Length = 2049
Score = 111 bits (277), Expect = 7e-24
Identities = 61/109 (55%), Positives = 77/109 (69%), Gaps = 13/109 (11%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQ-----------AMDKARRLGQEKVVNVHRLI 51
HVGG G+NLTSADTLVF+EHD N MRDHQ AMD+A RLGQ++VVNVHRLI
Sbjct: 1886 HVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAHRLGQKRVVNVHRLI 1945
Query: 52 MRDTLEEQVMSKERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSGD 100
MR TLEE+VMS ++F+VSVAN N S+K+ ++D + +L S +
Sbjct: 1946 MRGTLEEKVMSLQKFKVSVANTVINAENASMKTM--NTDQLLDLFASAE 1992
>UniRef100_UPI00003663A6 UPI00003663A6 UniRef100 entry
Length = 1482
Score = 100 bits (249), Expect = 1e-20
Identities = 46/70 (65%), Positives = 60/70 (85%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1389 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1448
Query: 63 KERFEVSVAN 72
++F++S+AN
Sbjct: 1449 LQKFKMSIAN 1458
>UniRef100_UPI00003663A5 UPI00003663A5 UniRef100 entry
Length = 1918
Score = 100 bits (249), Expect = 1e-20
Identities = 46/70 (65%), Positives = 60/70 (85%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1774 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1833
Query: 63 KERFEVSVAN 72
++F++S+AN
Sbjct: 1834 LQKFKMSIAN 1843
>UniRef100_UPI00002F0E18 UPI00002F0E18 UniRef100 entry
Length = 1996
Score = 100 bits (249), Expect = 1e-20
Identities = 46/70 (65%), Positives = 60/70 (85%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1827 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1886
Query: 63 KERFEVSVAN 72
++F++S+AN
Sbjct: 1887 LQKFKMSIAN 1896
>UniRef100_UPI00001CEBDD UPI00001CEBDD UniRef100 entry
Length = 1895
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1753 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1812
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1813 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1841
>UniRef100_UPI00001CE638 UPI00001CE638 UniRef100 entry
Length = 1787
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1645 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1704
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1705 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1733
>UniRef100_UPI000036E84B UPI000036E84B UniRef100 entry
Length = 321
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 179 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 238
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 239 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 267
>UniRef100_UPI00003AE32A UPI00003AE32A UniRef100 entry
Length = 539
Score = 100 bits (248), Expect = 2e-20
Identities = 47/82 (57%), Positives = 65/82 (78%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 396 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 455
Query: 63 KERFEVSVANAANNLRLLSVKS 84
++F++++AN + S++S
Sbjct: 456 LQKFKMNIANTVISQENASLQS 477
>UniRef100_Q8BTS9 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-
length enriched library, clone:E430027O22
product:TBP-ASSOCIATED FACTOR 172 (TAF-172) (TAF(II)170)
homolog [Mus musculus]
Length = 594
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 452 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 511
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 512 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 540
>UniRef100_Q8N6J1 Similar to BTAF1 RNA polymerase II, B-TFIID transcription factor-
associated, 170 kD [Homo sapiens]
Length = 680
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 538 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 597
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 598 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 626
>UniRef100_O14981 TBP-associated factor 172 (TAF-172) (TAF(II)170) [Homo sapiens]
Length = 1849
Score = 100 bits (248), Expect = 2e-20
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT+VFVEHD N MRD QAMD+A R+GQ++VVNV+RLI R TLEE++M
Sbjct: 1707 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMG 1766
Query: 63 KERFEVSVANAANNLRLLSVKSSVDHSDGVTELV 96
++F++++AN ++S ++S S G +L+
Sbjct: 1767 LQKFKMNIANT-----VISQENSSLQSMGTDQLL 1795
>UniRef100_UPI00002B9FC7 UPI00002B9FC7 UniRef100 entry
Length = 356
Score = 99.4 bits (246), Expect = 3e-20
Identities = 46/74 (62%), Positives = 60/74 (80%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLTSADT+VF+EHD N +D QAMD+A RLGQ + VNV+R++ R TLEE++MS
Sbjct: 203 HVGGLGLNLTSADTVVFLEHDWNPQKDLQAMDRAHRLGQRRTVNVYRILTRGTLEEKIMS 262
Query: 63 KERFEVSVANAANN 76
+RF++ VANA N
Sbjct: 263 LQRFKLDVANAVVN 276
>UniRef100_Q6BZT4 Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia
lipolytica [Yarrowia lipolytica]
Length = 1869
Score = 98.2 bits (243), Expect = 6e-20
Identities = 44/74 (59%), Positives = 61/74 (81%)
Query: 3 HVGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMS 62
HVGG G+NLT ADT++FVEHD N M D QAMD+A R+GQ+KVVNV+RLI R+TLEE++M
Sbjct: 1715 HVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRLITRNTLEEKIMG 1774
Query: 63 KERFEVSVANAANN 76
++F++++A+ N
Sbjct: 1775 LQKFKLNIASTVIN 1788
>UniRef100_UPI000021A1CE UPI000021A1CE UniRef100 entry
Length = 1963
Score = 97.4 bits (241), Expect = 1e-19
Identities = 49/97 (50%), Positives = 69/97 (70%), Gaps = 2/97 (2%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+NLT ADT++FVEHD N RD QAMD+A R+GQ+KVVNV+RLI R TLEE+++S
Sbjct: 1803 VGGLGLNLTGADTVIFVEHDWNPQRDLQAMDRAHRIGQKKVVNVYRLITRATLEEKILSL 1862
Query: 64 ERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSGD 100
+RF++ VA+ N + + + +D + +L GD
Sbjct: 1863 QRFKIDVASTVVNQQNAGLATM--DTDQILDLFSLGD 1897
>UniRef100_UPI000042EDAE UPI000042EDAE UniRef100 entry
Length = 1915
Score = 96.7 bits (239), Expect = 2e-19
Identities = 45/81 (55%), Positives = 64/81 (78%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+NLT ADT++FVEHD N M D QAMD+A RLGQ+KVVNV+RLI +DTLEE++M
Sbjct: 1750 VGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEKIMGL 1809
Query: 64 ERFEVSVANAANNLRLLSVKS 84
++F++++A+ N + ++S
Sbjct: 1810 QKFKMNIASTIVNQQNAGLQS 1830
>UniRef100_Q7S1Z7 Hypothetical protein [Neurospora crassa]
Length = 1893
Score = 96.7 bits (239), Expect = 2e-19
Identities = 48/97 (49%), Positives = 69/97 (70%), Gaps = 2/97 (2%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+NLT ADT++FVEHD N +D QAMD+A R+GQ+KVVNV+RLI R TLEE+++S
Sbjct: 1733 VGGLGLNLTGADTVIFVEHDWNPQKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKILSL 1792
Query: 64 ERFEVSVANAANNLRLLSVKSSVDHSDGVTELVGSGD 100
+RF++ VA+ N + + + +D + +L GD
Sbjct: 1793 QRFKIDVASTVVNQQNAGLATM--DTDQILDLFNLGD 1827
>UniRef100_UPI00003C2019 UPI00003C2019 UniRef100 entry
Length = 2115
Score = 95.9 bits (237), Expect = 3e-19
Identities = 45/73 (61%), Positives = 60/73 (81%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+ LT ADT++FVEHD N M+D QAMD+A RLGQ+KVVNV+RLI R+TLE ++M
Sbjct: 1969 VGGLGLTLTGADTVIFVEHDWNPMKDLQAMDRAHRLGQKKVVNVYRLITRNTLEAKIMGL 2028
Query: 64 ERFEVSVANAANN 76
+RF+++VAN+ N
Sbjct: 2029 QRFKLNVANSVVN 2041
>UniRef100_UPI000042D0DE UPI000042D0DE UniRef100 entry
Length = 1848
Score = 94.7 bits (234), Expect = 7e-19
Identities = 43/70 (61%), Positives = 59/70 (83%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+NLT ADT++FV+HD N M+D QAMD+A RLGQ KVVNV+RLI R TLEE++M
Sbjct: 1709 VGGLGLNLTGADTVIFVDHDWNPMKDLQAMDRAHRLGQRKVVNVYRLITRGTLEEKIMGL 1768
Query: 64 ERFEVSVANA 73
+RF++++A++
Sbjct: 1769 QRFKLNIASS 1778
>UniRef100_UPI0000236462 UPI0000236462 UniRef100 entry
Length = 1904
Score = 94.4 bits (233), Expect = 9e-19
Identities = 43/73 (58%), Positives = 59/73 (79%)
Query: 4 VGGFGMNLTSADTLVFVEHDRNSMRDHQAMDKARRLGQEKVVNVHRLIMRDTLEEQVMSK 63
VGG G+NLT ADT++FVEHD N +D QAMD+A R+GQ+KVVNV+RLI R TLEE++++
Sbjct: 1749 VGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNL 1808
Query: 64 ERFEVSVANAANN 76
+RF++ VA+ N
Sbjct: 1809 QRFKIDVASTVVN 1821
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.326 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,935,094
Number of Sequences: 2790947
Number of extensions: 8231057
Number of successful extensions: 29672
Number of sequences better than 10.0: 1407
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 28213
Number of HSP's gapped (non-prelim): 1483
length of query: 162
length of database: 848,049,833
effective HSP length: 117
effective length of query: 45
effective length of database: 521,509,034
effective search space: 23467906530
effective search space used: 23467906530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0211.20